LOC110488805 (LOC106605152)


Basic Information

Item Value
gene id LOC110488805
gene name LOC106605152
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36217020 ~ 36227769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561206.2
AGTCCAATTTGAAACCTATCCAGTAAATGTTTAAATATCCTATTTGACCCACAGAACATCAATTTACCCGAACAACTTTTCTGTCAATCCACATGCAGAGAAATCTGTATAAACAGTTCCAGGCGGAAATGGTCGGTCTTTTGATTACGTCACTCCGTCGAATAAGGAAGGGGACGTCATCTTAAACTGGGTGTCAGAGTTGAAATATGTCGTGGATAAGGGAAGGTGAATTGAACCTCATTGAGAAGCTCTCAGCCAACATACTGAAGGCTGGCCCGATGCCCAAACATGTGGCCTTTATCATGGATGGCAACCGGCGCTACGCCCGCAAGCGTCAGGTGGAGCGCCaggagggacacacacagggTTTTGACAAACTGGCAGAGACACTACGCTGGTGCCTGAACCTGAGCATCCATGAGGTCACAGTGTACGCCTTCAGCATCGAGAACTTCAAGCGGTCTAAAGACGAGGTGGACGGCCTCATGGAGCTGGCCAAGCAGAAGTTCATCAGACTGCTAGAAGAACAGGATAACCTGGAGAAGCATGGGGTGTGCATCCGGGTGTTGGGAGACCTGACACTACTGCCTCTGGACCTGCAGCAGCACATAGCCCGGGCTGTGGTGGCCACCAGGACTCATAACAAATGCTTTCTGAACGTGTGCTTTGCCTACACCTCAAGACATGAAATCGCTAATGCCGTCAGAGAGATGGCTTGGGGCGTGGAGCAGGGACTTATCAAATCCAGTGATGTATCGGAGGCCCTGCTGAGTCGGTGTCTGTACAGCAGTAACTCTCCCAATCCTGACCTGCTCATTCGCACGTCTGGAGAGGTGCGACTCAGTGACTTCCTGCTGTGGCAGACGTCCCACTCCTGCTTAGTGTTCCAGTCAGTCCTGTGGCCAGAGTACTCCTTCTGGAACCTGTGTGATGCCATTCTGCAGTATCAGCTCAATCACAGACCTCTTCAGAAAGCCAGAGATCAACACAGAGAGGGACAGGCCCTACAGCAGCAGGAGGCAGACCGGGCCTGTTTAGCAGACCTCCTACAGCACCACGGCAATGGAAAGCCCCTGGATGCCCAGAGGAGACAGGAAGCACTGCTCAACTACACTGCCAGCCGAGAGGAACGGGTTCAGGACTTCCTTGGTGCACTCCAGCACAAGAGAGACTCCTTCCTTACTGACTTAACCAGACAAGCTGCTCTGGCAtaaagaggggatgagaggaacaTAATGCTCCCCATCTTGAATTGGGGGAACAatcccatctctcttcctcttccctaaAGGGCTGAGTAGTTTTAAACTTCTTATTTTGTATGAGTGATTTTACCCCTATGGGGCTGTATGTGGGATATTTATGTGTATATTCTAAAAGAGAAGTCTGATCAAAGTCTAATAAAAAGAGAAGTCTGGTAAAGA
>XM_021561216.2
TACCCGAACAACTTTTCTGTCAATCCACATGCAGAGAAATCTGTATAAACAGTTCCAGGCGGAAATGGTCGGTCTTTTGATTACGTCACTCCGTCGAATAAGGAAGGGGACGTCATCTTAAACTGTGAGTTGGAAGGGGTGTCAGAGTTGAAATATGTCGTGGATAAGGGAAGGTGAATTGAACCTCATTGAGAAGCTCTCAGCCAACATACTGAAGGCTGGCCCGATGCCCAAACATGTGGCCTTTATCATGGATGGCAACCGGCGCTACGCCCGCAAGCGTCAGGTGGAGCGCCaggagggacacacacagggTTTTGACAAACTGGCAGAGACACTACGCTGGTGCCTGAACCTGAGCATCCATGAGGTCACAGTGTACGCCTTCAGCATCGAGAACTTCAAGCGGTCTAAAGACGAGGTGGACGGCCTCATGGAGCTGGCCAAGCAGAAGTTCATCAGACTGCTAGAAGAACAGGATAACCTGGAGAAGCATGGGGTGTGCATCCGGGTGTTGGGAGACCTGACACTACTGCCTCTGGACCTGCAGCAGCACATAGCCCGGGCTGTGGTGGCCACCAGGACTCATAACAAATGCTTTCTGAACGTGTGCTTTGCCTACACCTCAAGACATGAAATCGCTAATGCCGTCAGAGAGATGGCTTGGGGCGTGGAGCAGGGACTTATCAAATCCAGTGATGTATCGGAGGCCCTGCTGAGTCGGTGTCTGTACAGCAGTAACTCTCCCAATCCTGACCTGCTCATTCGCACGTCTGGAGAGGTGCGACTCAGTGACTTCCTGCTGTGGCAGACGTCCCACTCCTGCTTAGTGTTCCAGTCAGTCCTGTGGCCAGAGTACTCCTTCTGGAACCTGTGTGATGCCATTCTGCAGTATCAGCTCAATCACAGACCTCTTCAGAAAGCCAGAGATCAACACAGAGAGGGACAGGCCCTACAGCAGCAGGAGGCAGACCGGGCCTGTTTAGCAGACCTCCTACAGCACCACGGCAATGGAAAGCCCCTGGATGCCCAGAGGAGACAGGAAGCACTGCTCAACTACACTGCCAGCCGAGAGGAACGGGTTCAGGACTTCCTTGGTGCACTCCAGCACAAGAGAGACTCCTTCCTTACTGACTTAACCAGACAAGCTGCTCTGGCAtaaagaggggatgagaggaacaTAATGCTCCCCATCTTGAATTGGGGGAACAatcccatctctcttcctcttccctaaAGGGCTGAGTAGTTTTAAACTTCTTATTTTGTATGAGTGATTTTACCCCTATGGGGCTGTATGTGGGATATTTATGTGTATATTCTAAAAGAGAAGTCTGATCAAAGTCTAATAAAAAGAGAAGTCTGGTAAAGA
>XM_021561231.2
AATCTGTATAAACAGTTCCAGGCGGAAATGGTCGGTCTTTTGATTACGTCACTCCGTCGAATAAGGAAGGGGACGTCATCTTAAACTGCAAGGGTCAAAATTATTGACTCCCCTGTTTTGGTAGCCTGGCCGGTAGgcgcgtttggccagtaaccgaaaggttgctggattgaatcccggagctgacaaggtaaaaatcggttgttctgcccctgggcaaggcagttaacccccaacaaaaACTGCCCCCCTGGAGCCGATGATGTGGATGTCTACcaacatattttacaGGGTGTCAGAGTTGAAATATGTCGTGGATAAGGGAAGGTGAATTGAACCTCATTGAGAAGCTCTCAGCCAACATACTGAAGGCTGGCCCGATGCCCAAACATGTGGCCTTTATCATGGATGGCAACCGGCGCTACGCCCGCAAGCGTCAGGTGGAGCGCCaggagggacacacacagggTTTTGACAAACTGGCAGAGACACTACGCTGGTGCCTGAACCTGAGCATCCATGAGGTCACAGTGTACGCCTTCAGCATCGAGAACTTCAAGCGGTCTAAAGACGAGGTGGACGGCCTCATGGAGCTGGCCAAGCAGAAGTTCATCAGACTGCTAGAAGAACAGGATAACCTGGAGAAGCATGGGGTGTGCATCCGGGTGTTGGGAGACCTGACACTACTGCCTCTGGACCTGCAGCAGCACATAGCCCGGGCTGTGGTGGCCACCAGGACTCATAACAAATGCTTTCTGAACGTGTGCTTTGCCTACACCTCAAGACATGAAATCGCTAATGCCGTCAGAGAGATGGCTTGGGGCGTGGAGCAGGGACTTATCAAATCCAGTGATGTATCGGAGGCCCTGCTGAGTCGGTGTCTGTACAGCAGTAACTCTCCCAATCCTGACCTGCTCATTCGCACGTCTGGAGAGGTGCGACTCAGTGACTTCCTGCTGTGGCAGACGTCCCACTCCTGCTTAGTGTTCCAGTCAGTCCTGTGGCCAGAGTACTCCTTCTGGAACCTGTGTGATGCCATTCTGCAGTATCAGCTCAATCACAGACCTCTTCAGAAAGCCAGAGATCAACACAGAGAGGGACAGGCCCTACAGCAGCAGGAGGCAGACCGGGCCTGTTTAGCAGACCTCCTACAGCACCACGGCAATGGAAAGCCCCTGGATGCCCAGAGGAGACAGGAAGCACTGCTCAACTACACTGCCAGCCGAGAGGAACGGGTTCAGGACTTCCTTGGTGCACTCCAGCACAAGAGAGACTCCTTCCTTACTGACTTAACCAGACAAGCTGCTCTGGCAtaaagaggggatgagaggaacaTAATGCTCCCCATCTTGAATTGGGGGAACAatcccatctctcttcctcttccctaaAGGGCTGAGTAGTTTTAAACTTCTTATTTTGTATGAGTGATTTTACCCCTATGGGGCTGTATGTGGGATATTTATGTGTATATTCTAAAAGAGAAGTCTGATCAAAGTCTAATAAAAAGAGAAGTCTGGTAAAGA
>XM_036947352.1
AATCTGTATAAACAGTTCCAGGCGGAAATGGTCGGTCTTTTGATTACGTCACTCCGTCGAATAAGGAAGGGGACGTCATCTTAAACTGCAAGGGTCAAAATTATTGACTCCCCTGTTTTGGTAGCCTGGCCGGTAGgcgcgtttggccagtaaccgaaaggttgctggattgaatcccggagctgacaaggtaaaaatcggttgttctgcccctgggcaaggcagttaacccccaacaaaaACTGCCCCCCTGGAGCCGATGATGTGGATGTCTACcaacatattttacagtcgcagttgtaaatgagaacttgttctcaactagcctacctggttaaataaagGGGTGTCAGAGTTGAAATATGTCGTGGATAAGGGAAGGTGAATTGAACCTCATTGAGAAGCTCTCAGCCAACATACTGAAGGCTGGCCCGATGCCCAAACATGTGGCCTTTATCATGGATGGCAACCGGCGCTACGCCCGCAAGCGTCAGGTGGAGCGCCaggagggacacacacagggTTTTGACAAACTGGCAGAGACACTACGCTGGTGCCTGAACCTGAGCATCCATGAGGTCACAGTGTACGCCTTCAGCATCGAGAACTTCAAGCGGTCTAAAGACGAGGTGGACGGCCTCATGGAGCTGGCCAAGCAGAAGTTCATCAGACTGCTAGAAGAACAGGATAACCTGGAGAAGCATGGGGTGTGCATCCGGGTGTTGGGAGACCTGACACTACTGCCTCTGGACCTGCAGCAGCACATAGCCCGGGCTGTGGTGGCCACCAGGACTCATAACAAATGCTTTCTGAACGTGTGCTTTGCCTACACCTCAAGACATGAAATCGCTAATGCCGTCAGAGAGATGGCTTGGGGCGTGGAGCAGGGACTTATCAAATCCAGTGATGTATCGGAGGCCCTGCTGAGTCGGTGTCTGTACAGCAGTAACTCTCCCAATCCTGACCTGCTCATTCGCACGTCTGGAGAGGTGCGACTCAGTGACTTCCTGCTGTGGCAGACGTCCCACTCCTGCTTAGTGTTCCAGTCAGTCCTGTGGCCAGAGTACTCCTTCTGGAACCTGTGTGATGCCATTCTGCAGTATCAGCTCAATCACAGACCTCTTCAGAAAGCCAGAGATCAACACAGAGAGGGACAGGCCCTACAGCAGCAGGAGGCAGACCGGGCCTGTTTAGCAGACCTCCTACAGCACCACGGCAATGGAAAGCCCCTGGATGCCCAGAGGAGACAGGAAGCACTGCTCAACTACACTGCCAGCCGAGAGGAACGGGTTCAGGACTTCCTTGGTGCACTCCAGCACAAGAGAGACTCCTTCCTTACTGACTTAACCAGACAAGCTGCTCTGGCAtaaagaggggatgagaggaacaTAATGCTCCCCATCTTGAATTGGGGGAACAatcccatctctcttcctcttccctaaAGGGCTGAGTAGTTTTAAACTTCTTATTTTGTATGAGTGATTTTACCCCTATGGGGCTGTATGTGGGATATTTATGTGTATATTCTAAAAGAGAAGTCTGATCAAAGTCTAATAAAAAGAGAAGTCTGGTAAAGA
>XM_036947357.1
AATCTGTATAAACAGTTCCAGGCGGAAATGGTCGGTCTTTTGATTACGTCACTCCGTCGAATAAGGAAGGGGACGTCATCTTAAACTGCAAGGGTCAAAATTATTGACTCCCCTGTTTTGGTAGCCTGGCCGGTAGgcgcgtttggccagtaaccgaaaggttgctggattgaatcccggagctgacaaggtaaaaatcggttgttctgcccctgggcaaggcagttaacccccaacaaaaACTGCCCCCCTGGAGCCGATGATGTGGATGTCTACcaacatattttacagtagGGGTGTCAGAGTTGAAATATGTCGTGGATAAGGGAAGGTGAATTGAACCTCATTGAGAAGCTCTCAGCCAACATACTGAAGGCTGGCCCGATGCCCAAACATGTGGCCTTTATCATGGATGGCAACCGGCGCTACGCCCGCAAGCGTCAGGTGGAGCGCCaggagggacacacacagggTTTTGACAAACTGGCAGAGACACTACGCTGGTGCCTGAACCTGAGCATCCATGAGGTCACAGTGTACGCCTTCAGCATCGAGAACTTCAAGCGGTCTAAAGACGAGGTGGACGGCCTCATGGAGCTGGCCAAGCAGAAGTTCATCAGACTGCTAGAAGAACAGGATAACCTGGAGAAGCATGGGGTGTGCATCCGGGTGTTGGGAGACCTGACACTACTGCCTCTGGACCTGCAGCAGCACATAGCCCGGGCTGTGGTGGCCACCAGGACTCATAACAAATGCTTTCTGAACGTGTGCTTTGCCTACACCTCAAGACATGAAATCGCTAATGCCGTCAGAGAGATGGCTTGGGGCGTGGAGCAGGGACTTATCAAATCCAGTGATGTATCGGAGGCCCTGCTGAGTCGGTGTCTGTACAGCAGTAACTCTCCCAATCCTGACCTGCTCATTCGCACGTCTGGAGAGGTGCGACTCAGTGACTTCCTGCTGTGGCAGACGTCCCACTCCTGCTTAGTGTTCCAGTCAGTCCTGTGGCCAGAGTACTCCTTCTGGAACCTGTGTGATGCCATTCTGCAGTATCAGCTCAATCACAGACCTCTTCAGAAAGCCAGAGATCAACACAGAGAGGGACAGGCCCTACAGCAGCAGGAGGCAGACCGGGCCTGTTTAGCAGACCTCCTACAGCACCACGGCAATGGAAAGCCCCTGGATGCCCAGAGGAGACAGGAAGCACTGCTCAACTACACTGCCAGCCGAGAGGAACGGGTTCAGGACTTCCTTGGTGCACTCCAGCACAAGAGAGACTCCTTCCTTACTGACTTAACCAGACAAGCTGCTCTGGCAtaaagaggggatgagaggaacaTAATGCTCCCCATCTTGAATTGGGGGAACAatcccatctctcttcctcttccctaaAGGGCTGAGTAGTTTTAAACTTCTTATTTTGTATGAGTGATTTTACCCCTATGGGGCTGTATGTGGGATATTTATGTGTATATTCTAAAAGAGAAGTCTGATCAAAGTCTAATAAAAAGAGAAGTCTGGTAAAGA
>XM_021561222.2
ACTCCGTCGAATAAGGAAGGGGACGTCATCTTAAACTGTGAGTTGGAAGGCAAGGGTCAAAATTATTGACTCCCCTGTTTTGGTAGCCTGGCCGGTAGgcgcgtttggccagtaaccgaaaggttgctggattgaatcccggagctgacaaggtaaaaatcggttgttctgcccctgggcaaggcagttaacccccaacaaaaACTGCCCCCCTGGAGCCGATGATGTGGATGTCTACcaacatattttacaGGGTGTCAGAGTTGAAATATGTCGTGGATAAGGGAAGGTGAATTGAACCTCATTGAGAAGCTCTCAGCCAACATACTGAAGGCTGGCCCGATGCCCAAACATGTGGCCTTTATCATGGATGGCAACCGGCGCTACGCCCGCAAGCGTCAGGTGGAGCGCCaggagggacacacacagggTTTTGACAAACTGGCAGAGACACTACGCTGGTGCCTGAACCTGAGCATCCATGAGGTCACAGTGTACGCCTTCAGCATCGAGAACTTCAAGCGGTCTAAAGACGAGGTGGACGGCCTCATGGAGCTGGCCAAGCAGAAGTTCATCAGACTGCTAGAAGAACAGGATAACCTGGAGAAGCATGGGGTGTGCATCCGGGTGTTGGGAGACCTGACACTACTGCCTCTGGACCTGCAGCAGCACATAGCCCGGGCTGTGGTGGCCACCAGGACTCATAACAAATGCTTTCTGAACGTGTGCTTTGCCTACACCTCAAGACATGAAATCGCTAATGCCGTCAGAGAGATGGCTTGGGGCGTGGAGCAGGGACTTATCAAATCCAGTGATGTATCGGAGGCCCTGCTGAGTCGGTGTCTGTACAGCAGTAACTCTCCCAATCCTGACCTGCTCATTCGCACGTCTGGAGAGGTGCGACTCAGTGACTTCCTGCTGTGGCAGACGTCCCACTCCTGCTTAGTGTTCCAGTCAGTCCTGTGGCCAGAGTACTCCTTCTGGAACCTGTGTGATGCCATTCTGCAGTATCAGCTCAATCACAGACCTCTTCAGAAAGCCAGAGATCAACACAGAGAGGGACAGGCCCTACAGCAGCAGGAGGCAGACCGGGCCTGTTTAGCAGACCTCCTACAGCACCACGGCAATGGAAAGCCCCTGGATGCCCAGAGGAGACAGGAAGCACTGCTCAACTACACTGCCAGCCGAGAGGAACGGGTTCAGGACTTCCTTGGTGCACTCCAGCACAAGAGAGACTCCTTCCTTACTGACTTAACCAGACAAGCTGCTCTGGCAtaaagaggggatgagaggaacaTAATGCTCCCCATCTTGAATTGGGGGAACAatcccatctctcttcctcttccctaaAGGGCTGAGTAGTTTTAAACTTCTTATTTTGTATGAGTGATTTTACCCCTATGGGGCTGTATGTGGGATATTTATGTGTATATTCTAAAAGAGAAGTCTGATCAAAGTCTAATAAAAAGAGAAGTCTGGTAAAGA

Function

NR:

description
dehydrodolichyl diphosphate synthase complex subunit DHDDS-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups molecular_function

KEGG:

id description
K11778 DHDDS, RER2, SRT1; ditrans,polycis-polyprenyl diphosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561206.2 False 1424 mRNA 0.50 9 36217020 36227769
XM_021561216.2 False 1372 mRNA 0.51 9 36217084 36227769
XM_021561231.2 False 1526 mRNA 0.51 10 36217121 36227769
XM_036947352.1 False 1580 mRNA 0.51 11 36217121 36227769
XM_036947357.1 False 1530 mRNA 0.51 10 36217121 36227769
XM_021561222.2 True 1488 mRNA 0.52 10 36217171 36227769

Neighbor

gene id symbol gene type direction distance location
LOC110533753 LOC106605184 coding upstream 94770 36118066 ~ 36123229 (+)
LOC110488747 LOC106605155 coding upstream 103898 36109289 ~ 36113122 (+)
iglon5 iglon5 coding upstream 147608 35928900 ~ 36069412 (+)
LOC100653444 LOC106584591 coding upstream 351751 35855149 ~ 35865269 (+)
LOC110488684 LOC106605158 coding upstream 371134 35828977 ~ 35845886 (+)
LOC101268898 NA coding downstream 1746 36229498 ~ 36233187 (+)
LOC118936744 LOC106605183 coding downstream 47972 36275741 ~ 36278586 (+)
LOC110488849 LOC106605147 coding downstream 127114 36354883 ~ 36405310 (+)
LOC110488866 LOC106582899 coding downstream 192982 36420751 ~ 36656060 (+)
LOC110488878 LOC106561205 coding downstream 484315 36712084 ~ 36715233 (+)
G137250 NA non-coding upstream 2190 36214519 ~ 36214830 (+)
G137249 NA non-coding upstream 3204 36213478 ~ 36213816 (+)
G137223 LOC107707628 non-coding upstream 6712 36210012 ~ 36210308 (+)
G137245 LOC106605149 non-coding upstream 9289 36202488 ~ 36207731 (+)
G137240 NA non-coding upstream 19443 36197348 ~ 36197577 (+)
G137256 NA non-coding downstream 15835 36243604 ~ 36248682 (+)
G137257 NA non-coding downstream 23573 36251342 ~ 36252734 (+)
G137265 NA non-coding downstream 27491 36255260 ~ 36255446 (+)
G137266 NA non-coding downstream 29123 36256892 ~ 36257096 (+)
G137058 LOC106605156 other upstream 116743 36099611 ~ 36100277 (+)
G136994 NA other upstream 179279 35982832 ~ 36037741 (+)
LOC110488639 LOC106605005 other upstream 429550 35785691 ~ 35788114 (+)
LOC110488391 LOC106582385 other upstream 1033024 35180650 ~ 35184002 (+)
G139004 NA other downstream 1549292 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 1691966 37919735 ~ 37940714 (+)
G139101 NA other downstream 1715973 37943742 ~ 37944012 (+)
G139179 NA other downstream 1823590 38051359 ~ 38051744 (+)

Expression


Co-expression Network