LOC101268898


Basic Information

Item Value
gene id LOC101268898
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36229498 ~ 36233187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468485.2
TTTTACATTCGGTCATTATTTTACATTCACCATTGTTGCATTGCTAACGTGGCTAGAAGAGCTTAGTGAGATAGCCAAcaactcacaaaaaaaaaaaaattgtgttgcAATTCCCGAACAATCATCAACATGCCTAAAAGAAAGAGTGCTACCAAGGGAGATGAGCCTGCAAGACGTTCAGCACGTTTGTCATCTagACCTGCGCCAAAGCCGGCGGCCAAACCCAAAAAAGCGGCAGCACCCAAAaaGCCAGTCAAAGGAAAGAAGGCAGCGGAGAACGGTGATGCCAAGGCTGAGGTCTGAAATAAGTCCATTTCCCTCCCATTTCTAGGCGAAGGTTGAAGCCGCCGGAGACGCCAAATGAAGAACTGTTTGAAGTTGTGATCATTCTGTGTACTTGGTGACTGTACAGtttaaaataagtattttttaCCAAGTTTTTTTTATATTAAAAGATATCATTTATAGTTCATTGTGGGCTTACATTTGACGTAATGAAGCTGTTCCAAGGGGTTGTCACGTTCATATCCATTTTTTATGCCTTGTTGAATACCGTCCATATGAATACCGTCCATATCCTGTCCAAGTTTTAAAAAACCACACAAAAAAACTTCTAACCCTGTTTTTTTTACTGCTGAATGTTATTTTCCAACATAAATCTAAACATTAAAGGCAGCTAAAGTGTGTTTCTAAAATGTTTAAGAGGAATAGGGTTTTTGCCACTCCTTTTAGTTTTTTATTGTACAAGTAATATGAATTAATTACATACCAAATGTTTTGAATCAACATCAGATCTTCTCATTCAGGAGACAAAAGACACCGTTTGAAAGTAATCACTAACTTGTATTAGGTCAACACACAAAATTAATAATGTGAACGTAATCATTTGttctattgtttattttattaaattgTTCTGTAAAAACAGTGGAAAGAGCTATTGTGACGCCTATGAAATTTTAAATGTTCTTGAATAAAATGATAAAAAGGC
>TU157999
CCGGTTTCTATCTTATATTTTACATTCGGTCATTATTTTACATTCACCATTGTTGCATTGCTAACGTGGCTAGAAGAGCTTAGTGAGATAGCCAAcaactcacaaaaaaaaaaaaattgtgttgcAATTCCCGAACAATCATCAACATGCCTAAAAGAAAGAGTGCTACCAAGGGAGATGAGCCTGCAAGACGTTCAGCACGTTTGTCATCTagACCTGCGCCAAAGCCGGCGGCCAAACCCAAAAAAGCGGCAGCACCCAAAaaGCCAGTCAAAGGAAAGAAGGCAGCGGAGAACGGTGATGCCAAGGCTGAGGCGAAGGTTGAAGCCGCCGGAGACGCCAAATGAAGAACTGTTTGAAGTTGTGATCATTCTGTGTACTTGGTGACTGTACAGtttaaaataagtattttttaCCAAGTTTTTTTTATATTAAAAGATATCATTTATAGTTCATTGTGGGCTTACATTTGACGTAATGAAGCTGTTCCAAGGGGTTGTCACGTTCATATCCATTTTTTATGCCTTGTTGAATACCGTCCATATGAATACCGTCCATATCCTGTCCAAGTTTTAAAAAACCACACAAAAAAACTTCTAACCCTGTTTTTTTTACTGCTGAATGTTATTTTCCAACATAAATCTAAACATTAAAGGCAGCTAAAGTGTGTTTCTAAAATGTTTAAGAGGAATAGGGTTTTTGCCACTCCTTTTAGTTTTTTATTGTACAAGTAATATGAATTAATTACATACCAAATGTTTTGAATCAACATCAGATCTTCTCATTCAGGAGACAAAAGACACCGTTTGAAAGTAATCACTAACTTGTATTAGGTCAACACACAAAATTAATAATGTGAACGTAATCATTTGttctattgtttattttattaaattgTTCTGTAAAAACAGTGGAAAGAGCTATTGTGACGCCTATGAAATTTTAAATGTTCTTGAATAAAATGATAAAAAGGCTATTTTTGCTTAATTTAGACATCAA
>TU158000
CCGGTTTCTATCTTATATTTTACATTCGGTCATTATTTTACATTCACCATTGTTGCATTGCTAACGTGGCTAGAAGAGCTTAGTGAGATAGCCAAcaactcacaaaaaaaaaaaaattgtgttgcAATTCCCGAACAATCATCAACATGCCTAAAAGAAAGAGTGCTACCAAGGGAGATGAGCCTGCAAGACGTTCAGCACGTTTGTCATCTagACCTGCGCCAAAGCCGGCGGCCAAACCCAAAAAAGCGGCAGCACCCAAAaaGCCAGTCAAAGGAAAGAAGGCAGCGGAGAACGGTGATGCCAAGGCTGAGGTCTGAAATAAGTCCATTTCCCTCCCATTTCTAGGCGAAGGTTGAAGCCGCCGGAGACGCCAAATGAAGAACTGTTTGAAGTTGTGATCATTCTGTGTACTTGGTGACTGTACAGtttaaaataagtattttttaCCAAGTTTTTTTTATATTAAAAGATATCATTTATAGTTCATTGTGGGCTTACATTTGACGTAATGAAGCTGTTCCAAGGGGTTGTCACGTTCATATCCATTTTTTATGCCTTGTTGAATACCGTCCATATGAATACCGTCCATATCCTGTCCAAGTTTTAAAAAACCACACAAAAAAACTTCTAACCCTGTTTTTTTTACTGCTGAATGTTATTTTCCAACATAAATCTAAACATTAAAGGCAGCTAAAGTGTGTTTCTAAAATGTTTAAGAGGAATAGGGTTTTTGCCACTCCTTTTAGTTTTTTATTGTACAAGTAATATGAATTAATTACATACCAAATGTTTTGAATCAACATCAGATCTTCTCATTCAGGAGACAAAAGACACCGTTTGAAAGTAATCACTAACTTGTATTAGGTCAACACACAAAATTAATAATGTGAACGTAATCATTTGttctattgtttattttattaaattgTTCTGTAAAAACAGTGGAAAGAGCTATTGTGACGCCTATGAAATTTTAAATGTTCTTGAATAAAATGATAAAAAGGCTATTTTTGCTTAATTTAGACATCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468485.2 False 991 mRNA 0.36 6 36229515 36233162
TU157999 False 999 lncRNA 0.35 6 36229498 36233187
TU158000 True 1033 lncRNA 0.36 6 36229498 36233187

Neighbor

gene id symbol gene type direction distance location
LOC110488805 LOC106605152 coding upstream 1746 36217020 ~ 36227769 (+)
LOC110533753 LOC106605184 coding upstream 107265 36118066 ~ 36123229 (+)
LOC110488747 LOC106605155 coding upstream 116393 36109289 ~ 36113122 (+)
iglon5 iglon5 coding upstream 160103 35928900 ~ 36069412 (+)
LOC100653444 LOC106584591 coding upstream 364246 35855149 ~ 35865269 (+)
LOC118936744 LOC106605183 coding downstream 42579 36275741 ~ 36278586 (+)
LOC110488849 LOC106605147 coding downstream 121721 36354883 ~ 36405310 (+)
LOC110488866 LOC106582899 coding downstream 187589 36420751 ~ 36656060 (+)
LOC110488878 LOC106561205 coding downstream 478922 36712084 ~ 36715233 (+)
LOC110488885 LOC106605145 coding downstream 487986 36721148 ~ 36732138 (+)
G137250 NA non-coding upstream 14685 36214519 ~ 36214830 (+)
G137249 NA non-coding upstream 15699 36213478 ~ 36213816 (+)
G137223 LOC107707628 non-coding upstream 19207 36210012 ~ 36210308 (+)
G137245 LOC106605149 non-coding upstream 21784 36202488 ~ 36207731 (+)
G137240 NA non-coding upstream 31938 36197348 ~ 36197577 (+)
G137256 NA non-coding downstream 10442 36243604 ~ 36248682 (+)
G137257 NA non-coding downstream 18180 36251342 ~ 36252734 (+)
G137265 NA non-coding downstream 22098 36255260 ~ 36255446 (+)
G137266 NA non-coding downstream 23730 36256892 ~ 36257096 (+)
G137274 NA non-coding downstream 32466 36265628 ~ 36265874 (+)
G137058 LOC106605156 other upstream 129238 36099611 ~ 36100277 (+)
G136994 NA other upstream 191774 35982832 ~ 36037741 (+)
LOC110488639 LOC106605005 other upstream 442045 35785691 ~ 35788114 (+)
LOC110488391 LOC106582385 other upstream 1045519 35180650 ~ 35184002 (+)
G139004 NA other downstream 1543899 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 1686573 37919735 ~ 37940714 (+)
G139101 NA other downstream 1710580 37943742 ~ 37944012 (+)
G139179 NA other downstream 1818197 38051359 ~ 38051744 (+)

Expression


Co-expression Network