LOC110488849 (LOC106605147)


Basic Information

Item Value
gene id LOC110488849
gene name LOC106605147
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36354883 ~ 36405310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947374.1
CTCATTCTCCCCCCTCCGCGAAAGGGTGTGCGTTTTGAAAGGTTGTATTTATCTCACTAACGTCACTTTACAGGAGTACATTGGCGGAGTGATAACATCAGAAGTCACTGTCGGAGCCACGCATCCTCATACTGACTGAGTTCAAAGAAGGTCGTGTTCTGTCCGGGACAGGGTACGGCGGCATACACCCGATGCATGGAATGGAGTTCATATATCTCGGATCCCCCACAAATGCAACGTGACAGTTCTAAACGTTTAATTCAAGGTCAATATTGGACTTCGATCAGCTGTAACCGCGGACATTGTTGAGGATATTTATCTTCTTGTGGAACCGGAATTGTATGAGCAGCATCTTTTTCCCGGTCGGCGGTGAGCAATGACATATTTCACCGAAGAGGTTAACCTACGCTCCCAGTATCTAAAAAAACATTTCGGACCAAGTGTTCAATTAAAAAATGTGCTATTTAGGAGAGGATAtgtaactagctaactaacatagCACTGTAGCCGTGTCTTGAGCTCTCCAGGTCCGGTGTACCTTCGACGTTTCCTGATTTCACGAAAGGTGTTAGCCAGCTTGCCACAGTACCTGGAACTGCTGCATCCATCTCAAATAGCTCACTAAAGTttcctagctagccagccaattGTCGAACATGGATATTTTGTGGGTCATTTGGAAAACCACTTGCTAGTGAGGAAAGTGTGTTCATTACACAAATTATTTAAGTTTAAAAAAACGAATTTCAACATGTCTGTTCGCGTAGTTTTACACTCACCCAGTGGCTCCAGAAGTTTTCTGGAGCGGGGACTCCTACTTCTGGTGATGTTGATCTTTCTGGAGGGTACCGCACTGACGCTTGGAGCTGCCAGCTCACCGGACATCAGCGCGCAGGACAACACTGGAGGACACGAACACCTCGACGACCACCAAGGGATAGCAGGCAGCAACGACCGTACTAACTACACATACACAAAAAAGGCCTTCCCTGTCCTGTCTCTAGATTACCATCACATACAGGTGCCTTTCGAGATCTCTTTATGGGTGCTGCTGGCCTCTTTAATGAAATTAGggtTCCACCTGATCCCACGGCTGTCCAGCATCGTGCCCGAGTCCTGTCTGCTCATTGTGGTGGGCCTCCTGGTCGGTGGCCTCATCAAGCTGGCGGGCGAGGAGGTACCACCCGTGCTGGACTCCAACCTCTTcttcctgtgcctcctccccccGATCATCCTGGATGCGGGCTACTTCCTGCCCATCCGGCCCTTCATGGAGAACATCGGCACCATCCTGATGTTTGCCGTGGTCGGCACCCTGTGGAACGCGTTCTTTGTAGGGGGTCTCCTCTACGCCGTGTGCCAGATCGAGGGAACATACCTGAGCCAGGTGGAGCTGCTGCCCTGCCTGCTGTTCGGGAGCATCATCTCGGCCGTGGACCCGGTGGCCGTGCTGGCTGTGTTTGAGGAGATCCACATCAACGAGCTGCTGCACATTCTGGTATTCGGAGAGTCGCTGCTCAATGATGCCGTCACTGTGgtCTTATACCACCTGTTTGAGGAGTACTCTGGTGCAGGTGAGGTAACGCCGATGGACGTGGTCCTCGGGGTCATCTGCTTCCTGATTGTGTCGCTGGGCGGCATCGCCGTGGGTGCCATCTACGGTATCCTGGCGGCCTTCACCTCCCGGTTCACCTCGCACACCCGCGTCATCGAGCCCCTCTTCATGTTCGTTTACAGCTACATGGCTTACCTCTCGGCGGAGATGTTCCACCTGTCTGGAATTATGGCgctgatTGCGTGTGGCGCGGTGATGCGTCCCTACGTGGAGGCCAACATATCCCACAAGTCCCACACCACCGTCAAGTACTTCCTGAAGATGTGGAGCAGCGTGAGCGAGACCCTCATCTTCATCTTCCTGGGCGTGGCCACGGTGGCCGGGCCGCACGCCTGGAACTGGACCTTTGTCTCCGTCACCGTCATCCTTTGTCTGGTGTCACGTGTCATTGgcgtGGTGGGCCTTACCTTTATCATCAACAAGTTCCGCATCGTCAAGCTGACCACCAAGGACCAGTTCATTGTGGCCTACGGTGGCCTGCGAGGGGCCATCGCCTTCTCCCTGGGCTACCTGCTAGACAAGGACCTCTTCCCCATGAGGACCATGTTCCTCACCGCCATCATTACCGAAATCTTCTTCACCGTGTTTGTACAGGGCATGACTATCAAACCCCTGGTGGACCTGTTGGCTGTGAAGAAGAAGCAGGAGGCCAAGCGCTCCATCAATGAGGAGATCCACACCCAGTTCCTGGACCACCTGCTGACTGGCATTGAGGACATCTGTGGACACTACGGCCATCACCACTGGAAAGACAAGCTAAACCGCTTCAACAAGAAGTACATAAAGAAGTGCCTGATAGCGGGCGAGCGCTACAAGGAGCCGCAGCTCATCGCCTTCTACCACAAGATGGAGTTCAAGCAGGCCATCGAGCTGGTGGAGAGCGGCGGGGGCGTCAAGCTGCCCTCCGCCGTGCCCTCGCAGGTCTCCATGCAGAACATCCAGCCCAAGAAGCTGCCGCCCCCTGTAGCAGAGCGGGCCCTGCCTCAGTTCACCAAGGGCCGTGAGGAGGAGATCAGGAAGATCCTCAGGAGTAACCTGCAGAAGACCCGCCAGAGGCTGCGCTCCTACAACAGACACACTCTGGTGGCCGATCCCTTCGAGGACGGATGGAACGACTTCCTCCTGAAGAAGCAGAGGTTGATCGAGCTAGAGAAGAAGATGACAGAGATGAGTAACTACCTCACAGTCCCTGGCGCAATTCCCGACTCCCCCACCATGTGCAGAGCCAGACTGGCCTCAGACCCCAACGCCTTCTACAACATCAAGGCGTCTTCAGACGGCGTCCCCACCATCCAGGTGGACCTGGCCTCCCCCCAGTCCCCGGACTCTGTCAACATGCTGAACGAGTTCTCCAAGGAGGGTGCCACGGGCCAGAGCCTGGGTCAGAGGGAGGGTGCCACGGGCCTGGGTCAGAGGGAGGGGGCTGACCGGGATGAGGACCAAGGCCTGATGATGAAGCCGGCCGggaaaggggagaagggagaggggggcaacAAGAACCCAGGGCTGATGAGGTGTCTGAGTGACCCGGGACCCAGTAATGAGGACGAGGAGGATGAACCATTCCTTCCCTAAAAAAAACAACTAGCTCCTCCCATTGTGAGGAATAGGGAGGGGCCTGGTTGTAGCGGCTCCTCCCCATGAGTGGGGCACTACAGGGGAAAGGTCCACCTCCTCTcactccaccaccacctcattTGAGTTTGCTATCCCATTGGTTGAGGAACCAATAAAGCCAAAACTGTTAAGAAAGGACTTGGGACATAACTTGATTTATGAACCAAAAGAAAAAAGGAGATTAAATAGCCATCTTTTTTCAATAGTTGTCATTGCTCTTTTTTCGTTGTTTAAGTGATAGGAAGGCAGTCGCCACCTTGGGTGATCTTGGGCTTGGTGGGAATTATCCCGAGAGACAGGGGAACATAATTATGCGTTACCAAAGGGTTGGACTGGTTTAGTCACAGACAATGTTCCACATTTTGTCTTCATAACGTTTACGATCGTTCTTCTACTTTCAAGAAAAATTGgcctcattttttttttttgtcagacaGAGTAAACCCCTTTTCACTAGGTGCATTGTATCACACAATTAACCTCTTAAACGGCATTTTTTTAATTTCAGGGTTGATACGAGGCTGTTGTTTATGTGGTTGTCTTTTGTCATCGTTTGTCCTTCAGTTGGTCAGGGTTCTACGTGGTGTACTCGGTGCTGTACACTGGATGTACTTCACACTGGATGTTTTCACTGTGCTAAACTCGACAGACCTCTTCACCAACTCGCCTATGGAGACCCTAAGTCTAAGGAATGTGTCAATGCGCCACACTTGGAAATGTTGCATCGCCGTTTCAAGCGTCGCCTCTCTATTTTAAACGAACATACAAAATCGGCAGCATGGCTGAGATGTGTATGCTGTGCAGTAGAAGATCATTTACATAAAAGAAGGATTGTGATGCAACACCAAGAGATTTGTTGATCTTGAATGGAAATCCCCTATATAAGCCAATCCCTAAAATCACACCAAATACTGTAATACTCCTGACACCCAgccaaaaaaaactgttttgggTTCAAATAATTTACAAAGACAAATTTGTATGTGCACTGTAGtggacataaaaaaaaaagttgatagTAAATATGAAAAATGTATATTACAGTAAATGGGTACAGTAGGTAAACATATTTGCCACATTCTGATGTCTACTACAGAGGGCATTTATAAACGAGCTCTTATTTAGCTCGTATTGAATTTGGAAAAGAATGGTTACACTGCTCTGAAAACCATCCACATTCTTTAAGATATTTACTAGAAGGAATTTGAATTCAAACTCACAAAAATTACAATTACACAAATACATACACTTACCTTCTTACCACAGCATATGCGAATTGTGTTGGCAGCCATTTTGAAAATCCAGGAAGAGAACGTTATCTAGGCCACACCCCCACTCATGTGATATCATTGGATAAACCCAGAATGTCCTACAACAGGACTTAACGCAGTGGCATGTCAAAGAGTGACGAAAAATTAATTGTTGGGTCTCAGGAGGATATTTTACAAGTTTCCTTTAAGAAAAGGCTCTAGTATGGGCCATTTCAGAACCATTTTGTGGTGTTTTCTCCATATTCTCTTGTTGGTAGTCGCATCTTACAATTCATGTTGCATCTTATGGCTCTGATCTATTGTTCTTTTCTCACTTTGCACCTTATTCACATCAAGtattttagacatttttaaaaGACCCTGTTGCCGGTTTAACGTTCCTCATTTGGTTTTTAGCGCTCCCCTTTTGAAAATGTAGTGTTCCATAGCCATTTTGGAGTTTTAGGCATCACTGTGAAGGATATGAGGTGTGGGTGGACTGAACGGTTCTTTGTCGTCTAACCACCTCAATGACCCAGAATATATATTTACGCGTCCACCATCACAGGTATGTTGACTTTGTCAATCCACAACAGACACAATCATGACACGCGGGTTAACATTCACATGAAACACTTATAGACATTTAGCCAGCTAGCTTTTGCTAGCTAGTTTATCCTAGGAGATGGACAtcgggttgttattttacctgacaTGCATACGGTCCGATTATTAGCTGgttctttgtagaattttgacccGGAGTCATACAAAATCGTGCCTCTCTACTCCGATTAATCCACAGGTAAAAAGGGAAACCTAGTTCATTTTTTAGTTCGTTATCTCTAGTTAATCTCTCCTCGTTTAGTCTTTCAAGCGTTCGCGTGGGTTTGTATCTTCCTGATATCCAATAAGGAGGGGACTTGCAGTGCGACCAATGGAACCAAGTTCCATTTTAGCGCTTGGCTACGCAGACACTTGGTCACATACGCAAGCACCAAATGCCCGATGAGGTTTGCATGTTATTTAAAATGCTGGCCTGGAGATACAGGCATGTGCAGAAGTAGCAGTTCAATGCAGTATATTGGTGTAAAATGCGTATAGCGATATATTGATTATAACCATTTAATTGAAAAATGCCCTTTTAAAGCATATGCCATGATGTGATCTTGTCAATGCAAACGAAGAAGTCATCACGGGCTAGCTAGTTGTAAGTAAATTCACATCTGAACGCAAGAGCCATCACCTATTCTGCTCGCACAACAGCGTAAGGCTAATCTAGGGTTTGTATAAAACTATGAAAACCTtgtcatgtacagtatatggttGTATAGGTATtatgtatacagtgcattgctTCTCTTTTCTACACCAAGCCTTAGGATCAATAGGAACAATTGAATAATTGATTTGAAAAGGCTGTTAGCTATATTGTCAATGTGATTACTGTTGTTCATCGATCTGAACATCTCAACGGGACATTCAACCACTTTTAGGTGCAAAGTAAAATGCACCTAACATTGATTCAATAGCGTAGCAACCCCTCATCCCACCTACTGTACAACCAACTTTAGCTGGAGTCTGTAACTGTCTCAACTAGAGAAGCCTAAGATGTCCAAGACCGTGGCCTAGTTTGCTGGCTGTCACCTTGGTGTTAGAATGACCCTTGTCCCTCTCTGACCTCTGTGTGCTATCACTTTATGCCCAGATAGTGAGAGAGGGGTCTCCTTACAGCTTAGGAGAGAGAGGTCTCCTTACAGtttaggggaggagagagagagagagaggtctcctTACAgcttagaggaggagggaggagagagagaggtcacctTACAGCttaga
>TU158178
TCGCACACCCGCGTCATCGAGCCCCTCTTCATGTTCGTTTACAGCTACATGGCTTACCTCTCGGCGGAGATGTTCCACCTGTCTGGAATTATGGCgctgatTGCGTGTGGCGCGGTGATGCGTCCCTACGTGGAGGCCAACATATCCCACAAGTCCCACACCACCGTCAAGTACTTCCTGAAGATGTGGAGCAGCGTGAGCGAGACCCTCATCTTCATCTTCCTGGGCGTGGCCACGGTGGCCGGGCCGCACGCCTGGAACTGGACCTTTGTCTCCGTCACCGTCATCCTTTGTCTGGTGTCACGTGTCATTGTTCCGCATCGTCAAGCTGACCACCAAGGACCAGTTCATTGTGGCCTACGGTGGCCTGCGAGGGGCCATCGCCTTCTCCCTGGGCTACCTGCTAGACAAGGACCTCTTCCCCATGAGGACCATGTTCCTCACCGCCATCATTAC
>TU158176
AGAAGAAGCAGGAGGCCAAGCGCTCCATCAATGAGGAGATCCACACCCAGTTCCTGGACCACCTGCTGACTGGCATTGAGGACATCTGTGGACACTACGGCCATCACCACTGGAAAGACAAGCTAAACCGCTTCAACAAGAAGTACATAAAGAAGTGCCTGATAGCGGGCGAGCGCTACAAGGAGCCGCAGCTCATCGCCTTCTACCACAAGATGGAGTTCAAGCAGGCCATCGAGCTGGTGGAGAGCGGCGGGGGCGTCAAGCTGCCCTCCGCCGTGCCCTCGCAGGTCTCCATGCAGAACATCCAGCCCAAGAAGCTGCCGCCCCCTGTAGCAGAGCGGGCCCTGCCTCAGTTCACCAAGGGCCGTGAGGAGGAGATCAGGAAGATCCTCAGGAGTAACCTGCAGAAGACCCGCCAGAGGCTGCGCTCCTACAACAGACACACTCTGGTGGCCGATCCCTTCGAGGACGGATGGAACGACTTCCTCCTGAAGAAGCAGAGGTTGATCGAGCTAGAGAAGAAGATGACAGAGATGAGTAACTACCTCACAGTCCCTGGCGCAATTCCCGACTCCCCCACCATGTGCAGAGCCAGACTGGCCTCAGACCCCAACGCCTTCTACAACATCAAGGCGTCTTCAGACGGCGTCCCCACCATCCAGGTGGACCTGGCCTCCCCCCAGTCCCCGGACTCTGTCAACATGCTGAACGAGTTCTCCAAGGAGGGTGCCACGGGCCA

Function

NR:

description
sodium/hydrogen exchanger 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947374.1 False 6327 mRNA 0.48 12 36354883 36405310
TU158178 False 456 TUCP 0.58 3 36381892 36385856
TU158176 True 739 TUCP 0.41 7 36395286 36401971

Neighbor

gene id symbol gene type direction distance location
LOC118936744 LOC106605183 coding upstream 76297 36275741 ~ 36278586 (+)
LOC101268898 NA coding upstream 121721 36229498 ~ 36233187 (+)
LOC110488805 LOC106605152 coding upstream 127114 36217020 ~ 36227769 (+)
LOC110533753 LOC106605184 coding upstream 232633 36118066 ~ 36123229 (+)
LOC110488747 LOC106605155 coding upstream 241761 36109289 ~ 36113122 (+)
LOC110488866 LOC106582899 coding downstream 15441 36420751 ~ 36656060 (+)
LOC110488878 LOC106561205 coding downstream 306774 36712084 ~ 36715233 (+)
LOC110488885 LOC106605145 coding downstream 315838 36721148 ~ 36732138 (+)
LOC110533757 NA coding downstream 339771 36745080 ~ 36747247 (+)
LOC118939566 NA coding downstream 372708 36778018 ~ 36780665 (+)
G137298 LOC106605148 non-coding upstream 54812 36298120 ~ 36300071 (+)
G137280 NA non-coding upstream 83701 36270937 ~ 36271182 (+)
G137275 NA non-coding upstream 88055 36266568 ~ 36266828 (+)
G137274 NA non-coding upstream 89009 36265628 ~ 36265874 (+)
G137266 NA non-coding upstream 97787 36256892 ~ 36257096 (+)
G137415 NA non-coding downstream 9428 36414738 ~ 36415241 (+)
G137550 NA non-coding downstream 88430 36493740 ~ 36503970 (+)
G137551 NA non-coding downstream 90387 36495697 ~ 36498945 (+)
G137657 NA non-coding downstream 282472 36687782 ~ 36688029 (+)
G137058 LOC106605156 other upstream 254606 36099611 ~ 36100277 (+)
G136994 NA other upstream 317142 35982832 ~ 36037741 (+)
LOC100653444 LOC106584591 other upstream 498483 35855149 ~ 35865269 (+)
LOC110488639 LOC106605005 other upstream 567413 35785691 ~ 35788114 (+)
LOC110488391 LOC106582385 other upstream 1170887 35180650 ~ 35184002 (+)
G139004 NA other downstream 1371751 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 1514425 37919735 ~ 37940714 (+)
G139101 NA other downstream 1538432 37943742 ~ 37944012 (+)
G139179 NA other downstream 1646049 38051359 ~ 38051744 (+)
LOC110489834 eny2 other downstream 5133985 41539240 ~ 41541654 (+)
G137433 NA non-coding upstream 17605 36364072 ~ 36364287 (+)

Expression


Co-expression Network