LOC110488878 (LOC106561205)


Basic Information

Item Value
gene id LOC110488878
gene name LOC106561205
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36712084 ~ 36715233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468497.2
TTGTgtctataaaatgagctgctcGTAATGCCTAGATAATCCTTTCTACTGTAGTTTATAACATTTAAATACATAATGTTAGCCATGGATAATTGCAaatatgttgctactgctctcaataatATTGCCTCTCTGAATTTATCAGGCGCTCTCGACTAAGGTCAGTGggaaaagttgtgatggactactttctggacgATGAATGCtgactctctctcattctgaaaataacactttttgaaatcagtggaacacAACAGACCAAACAAGCTGTGCAAACTAAACGGAAACAACACAGGATGTCTTAATAAAGGGGTATCAGTCTGCCGTGAAGgattcatccatgtatacagTAGAACACGCCTGACTCTGATCCACCAGTCATAGTCATCAAAAAGAGAGGAAGCGCAAGCAATGGcagcagcgcagtcatcaactgcacgcaccatttcttcaccaactaCAGAGTTGGAAAAACACGTGTGGACCTGAATTGTGATaactgcagtggccaaaacaagaacaagtttgtgctctggtattgtgCCTGGTGGACCATGCATAAGCTCCAGCATAAtctggaccttcacttcctgatcacaggccacaccaagtttGCCCCCAGACTGGCGCTTCGGCCTCATCAAGCAGCTcttcagaaagaccagagtgaacactttgtctgaggttgctggtgttgtgaaggacagcactgtgacaggggtcaacatcccacagctggttggactggaggatgtTACGGTGCTGttggaaagctatggctggcaacaacacctgactccaTACTTCAGGCTGCTGCCACAAatcaagcagtaccagcacttcagCTAAGAGGCTTTGGAGCCTGATGTTGTCGCCAAGGAGCATTCGGACTGTCATGATCAGGTTTCAGCTGCTGTGCTacgctgacatccttcctcccatagatggtctgcctgtaaAAGCatcacctggactggacacagctagacaaactATCTTTTTGACaagatcagggagttttgcgACGAAGAGGCTATGGACAATCCaagccctgcaccaaagtcaagggcaggacagaaacaggctctccgaatatagattcccttgttcatgcgtGGTTTGGACGGACCAGTCATCtgcactatctgcagtgcctctattcacatgactctctcctaacacacacgCCATACGTTGTTGCTACTATTTTTTTGATTATCCcgctgctcagccactttacccctgatcGTATGCATATAACTTCCTCGTCTATCACTGATATCGTTATTGATATTGCTctagtacatactgtatattttatttatattgacactatctatttctgatattgctactatgtaCAAACAATTttgctgtaccgtttacaccttctgtagagaccaaTGACTTAGCAAGACTGATTAATATTGATGTGGGGTTGTAACATGATTTTGTGACATACCACAACAACATCATGTGACCGCATCAAGTGTCCACCACATAAATATAAGTGACGCATGcatctgtttatgtactgtacatgtgcaaAAAAACTAAAACTCCCTCAGGTTGCATGGCCTTAAAACGTATGTATATAATACTATGTGATAagtgcatgtgtaacagtatataaAGTATGCTAATGTACTGGTGTGAAGGCAtttgggcagtggtgtaaagtacttaagtaaaaatactttaaagtactacttaagtagttttttttgtggcatctgtacattactatttatatttttgtcaactttaacttcacta
>XR_005036565.1
TTGTgtctataaaatgagctgctcGTAATGCCTAGATAATCCTTTCTACTGTAGTTTATAACATTTAAATACATAATGTTAGCCATGGATAATTGCAaatatgttgctactgctctcaataatATTGCCTCTCTGAATTTATCAGGCGCTCTCGACTAAGGTCAGTGggaaaagttgtgatggactactttctggacgATGAATGCtgactctctctcattctgaaaataacactttttgaaatcagtggaacacAACAGACCAAACAAGCTGTGCAAACTAAACGGAAACAACACAGGATGTCTTAATAAAGGGGTATCAGTCTGCCGTGAAGgattcatccatgtatacagataacaggagccaggtgcgaaATAACGGTATCGAGCATGAGCGCATAGATATTCTTCAcagcaacagttacatctatcaactgaaGCGCTTAGGGGGCTGGGACCAGctctgcgccaacaatcaacgttaggctggTAGAACACGCCTGACTCTGATCCACCAGTCATAGTCATCAAAAAGAGAGGAAGCGCAAGCAATGGcagcagcgcagtcatcaactgcacgcaccatttcttcaccaactaCAGAGTTGGAAAAACACGTGTGGACCTGAATTGTGATaactgcagtggccaaaacaagaacaagtttgtgctctggtattgtgCCTGGTGGACCATGCATAAGCTCCAGCATAAtctggaccttcacttcctgatcacaggccacaccaagtttGCCCCCAGACTGGCGCTTCGGCCTCATCAAGCAGCTcttcagaaagaccagagtgaacactttgtctgaggttgctggtgttgtgaaggacagcactgtgacaggggtcaacatcccacagctggttggactggaggatgtTACGGTGCTGttggaaagctatggctggcaacaacacctgactccaTACTTCAGGCTGCTGCCACAAatcaagcagtaccagcacttcagCTAAGAGGCTTTGGAGCCTGATGTTGTCGCCAAGGAGCATTCGGACTGTCATGATCAGGTTTCAGCTGCTGTGCTacgctgacatccttcctcccatagatggtctgcctgtaaAAGCatcacctggactggacacagctagacaaactATCTTTTTGACaagatcagggagttttgcgACGAAGAGGCTATGGACAATCCaagccctgcaccaaagtcaagggcaggacagaaacaggctctccgaatatagattcccttgttcatgcgtGGTTTGGACGGACCAGTCATCtgcactatctgcagtgcctctattcacatgactctctcctaacacacacgCCATACGTTGTTGCTACTATTTTTTTGATTATCCcgctgctcagccactttacccctgatcGTATGCATATAACTTCCTCGTCTATCACTGATATCGTTATTGATATTGCTctagtacatactgtatattttatttatattgacactatctatttctgatattgctactatgtaCAAACAATTttgctgtaccgtttacaccttctgtagagaccaaTGACTTAGCAAGACTGATTAATATTGATGTGGGGTTGTAACATGATTTTGTGACATACCACAACAACATCATGTGACCGCATCAAGTGTCCACCACATAAATATAAGTGACGCATGcatctgtttatgtactgtacatgtgcaaAAAAACTAAAACTCCCTCAGGTTGCATGGCCTTAAAACGTATGTATATAATACTATGTGATAagtgcatgtgtaacagtatataaAGTATGCTAATGTACTGGTGTGAAGGCAtttgggcagtggtgtaaagtacttaagtaaaaatactttaaagtactacttaagtagttttttttgtggcatctgtacattactatttatatttttgtcaactttaacttcacta
>TU158442
TATAACATTTAAATACATAATGTTAGCCATGGATAATTGCAaatatgttgctactgctctcaataatATTGCCTCTCTGAATTTATCAGGCGCTCTCGACTAAGGTCAGTGggaaaagttgtgatggactactttctggacgATGAATGCtgactctctctcattctgaaaataacactttttgaaatcagtggaacacAACAGACCAAACAAGCTGTGCAAACTAAACGGAAACAACACAGGATGTCTTAATAAAGGGGTATCAGTCTGCCGTGAAGgattcatccatgtatacagAACACGCCTGACTCTGATCCACCAGTCATAGTCATCAAAAAGAGAGGAAGCGCAAGCAATGGcagcagcgcagtcatcaactgcacgcaccatttcttcaccaactaCAGAGTTGGAAAAACACGTGTGGACCTGAATTGTGATaactgcagtggccaaaacaagaacaagtttgtgctctggtattgtgCCTGGTGGACCATGCATAAGCTCCAGCATAAtctggaccttcacttcctgatcacaggccacaccaagtttGCCCCCAGACTGGCGCTTCGGCCTCATCAAGCAGCTcttcagaaagaccagagtgaacactttgtctgaggttgctggtgttgtgaaggacagcactgtgacaggggtcaacatcccacagctggttggactggaggatgtTACGGTGCTGttggaaagctatggctggcaacaacacctgactccaTACTTCAGGCTGCTGCCACAAatcaagcagtaccagcacttcagCTAAGAGGCTTTGGAGCCTGATGTTGTCGCCAAGGAGCATTCGGACTGTCATGATCAGGTTTCAGCTGCTGTGCTacgctgacatccttcctcccatagatggtctgcctgtaaAAGCatcacctggactggacacagctagacaaactATCTTTTTGACaagatcagggagttttgcgACGAAGAGGCTATGGACAATCCaagccctgcaccaaagtcaagggcaggacagaaacaggctctccgaatatagattcccttgttcatgcgtGGTTTGGACGGACCAGTCATCtgcactatctgcagtgcctctattcacatgactctctcctaacacacacgCCATACGTTGTTGCTACTATTTTTTTGATTATCCcgctgctcagccactttacccctgatcGTATGCATATAACTTCCTCGTCTATCACTGATATCGTTATTGATATTGCTctagtacatactgtatattttatttatattgacactatctatttctgatattgctactatgtaCAAACAATTttgctgtaccgtttacaccttctgtagagaccaaTGACTTAGCAAGACTGATTAATATTGATGTGGGGTTGTAACATGATTTTGTGACATACCACAACAACATCATGTGACCGCATCAAGTGTCCACCACATAAATATAAGTGACGCATGcatctgtttatgtactgtacatgtgcaaAAAAACTAAAACTCCCTCAGGTTGCATGGCCTTAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106561205

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468497.2 False 1779 mRNA 0.42 3 36712084 36715233
XR_005036565.1 False 1915 mRNA 0.43 4 36712084 36715233
TU158442 True 1528 lncRNA 0.44 3 36712140 36715041

Neighbor

gene id symbol gene type direction distance location
LOC110488866 LOC106582899 coding upstream 56024 36420751 ~ 36656060 (+)
LOC110488849 LOC106605147 coding upstream 306774 36354883 ~ 36405310 (+)
LOC118936744 LOC106605183 coding upstream 433498 36275741 ~ 36278586 (+)
LOC101268898 NA coding upstream 478922 36229498 ~ 36233187 (+)
LOC110488805 LOC106605152 coding upstream 484315 36217020 ~ 36227769 (+)
LOC110488885 LOC106605145 coding downstream 5915 36721148 ~ 36732138 (+)
LOC110533757 NA coding downstream 29848 36745080 ~ 36747247 (+)
LOC118939566 NA coding downstream 62785 36778018 ~ 36780665 (+)
LOC110534928 LOC106582914 coding downstream 98537 36813770 ~ 36825082 (+)
LOC110488894 LOC106605182 coding downstream 110502 36825735 ~ 36827081 (+)
G137657 NA non-coding upstream 24055 36687782 ~ 36688029 (+)
G137550 NA non-coding upstream 208114 36493740 ~ 36503970 (+)
G137551 NA non-coding upstream 213139 36495697 ~ 36498945 (+)
G137415 NA non-coding upstream 296843 36414738 ~ 36415241 (+)
G137447 NA non-coding upstream 320196 36391123 ~ 36391888 (+)
G137702 NA non-coding downstream 57917 36773150 ~ 36773510 (+)
G137711 NA non-coding downstream 71124 36786357 ~ 36786558 (+)
G137712 NA non-coding downstream 71493 36786726 ~ 36787107 (+)
G137770 NA non-coding downstream 188682 36903915 ~ 36904132 (+)
G137058 LOC106605156 other upstream 611807 36099611 ~ 36100277 (+)
G136994 NA other upstream 674343 35982832 ~ 36037741 (+)
LOC100653444 LOC106584591 other upstream 855684 35855149 ~ 35865269 (+)
LOC110488639 LOC106605005 other upstream 924614 35785691 ~ 35788114 (+)
G139004 NA other downstream 1061828 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 1204502 37919735 ~ 37940714 (+)
G139101 NA other downstream 1228509 37943742 ~ 37944012 (+)
G139179 NA other downstream 1336126 38051359 ~ 38051744 (+)
LOC110489834 eny2 other downstream 4824062 41539240 ~ 41541654 (+)

Expression


Co-expression Network