LOC110488899 (LOC106582930)


Basic Information

Item Value
gene id LOC110488899
gene name LOC106582930
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36835181 ~ 36839924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947491.1
ATGCTTCTGGATGACGTGATAGCATTGTTGATGCTCGCGCTTGCTCCAGTGTGCACTGAGAAGGTGTTACTGACTCTGTAAAGCAGATTGCAGCGACCCCGAAACGGAGTATGCGAATGCCAGAGGAACTACGCCGCGAATTTGGTCGTTATGGGCCTATTGTAGATGTCTACATTCCACTTGACTTCTCTACACGGCGACCAAGAGGATTTGCTTACATTCAATTCGAGGACGTGCGAGATGCAGAGGATGCCCTCCACAACCTGGACCACAAGTGGGTGTGTGGTCGACAGATCGAGATCCAGTTTGCACAGGGGGACCGAAAAACCCCCAACCAGATGAAGACTAAGGAGAGCTCTCCTCGCAGAGGGTCCCGCAGCAGCTCCTTCTCCCGCTACGACGACTACGAACGCGGCGATGGCCGTCGCAGACGCTCTCGCAGTCGCAGCTACGAAAGGCGCCGGTCGCGTAGCCCTTCCTGCGACCGCCGTCCTCGGAGGTCAGAGAGCCCTAGAGACTCTCGATCATATGGCAGGCACAGGCGAAGCAGAAGCCATGAAAATGACAgGTACAGGGGCCCTCCACGTGAACACCACAGGATGCACCACGCACCCCCGTCTCGTAACCGCTCTGcatcccgctccccctctcctcccagatCTAGGCCCAAAGACACAAAGTCTCAGTCCAAATCCCCCAGCCCCGTCAAGGACTTCCACCCCTCTTCTGGCTCCCAGAAACAGGCCTGTCGACGCTCCTACTCCAGATCTGTGTCCCGATCTCGCTCCAGATCCTAGGACCCCACCACCCTCAAACCCTGTTATTCTGTAGCTAAAGATATTTTTGTTCAACACTACAACATATGAATATGGTATCTAGGGAGTGGTTATTCCACACCCCACCTCGGTTCATTAGTTGAGTTATTATGATATCTCTGGGCTGATGCCATACAACAGGAGAGCTGGTTGTCCCTACAGATGGATAGTACTTTTTTTTATGTTAGTTCAGTTTCATTCACCTCTGGAAAAACATTGTCTGTTTTTGATTTACATTCATATCAGTTTAATTCTATTAATTGAGAACCCAATGGATTTAAGTTCAGCACATAAGAATTGGTCAACTATGAAATGCAAAGGTACAGTTTTGGGCTAATGGGTATTAACCTCTAGCTACAGAAGAGTCCAAAAACCCATTTATAAGAAAAAACAAGTTAAATCTGGAGTTTGCAGTGATATCTAGCCATCAAGTTAACTGCTTTTATTTTTGTACATTTGATGTTGCTGAAGTCTCccgcattttttttatttgatatcaattgttattttgtgttcaaATCGAGCAGCGGTGTTTTCTTTTTGTGGATTAAAAATGTTACGTTTTAACTTTTGTTAATCA
>XM_021561355.2
GGCCAGGCCACCCCTGGTGGGCAGGGCTAAAATAATGTTATCTGAGCCTGCGCGCTGGCCTCTGTTCGCGGATAGATGAGACCACCTCGCTGCTTTTTGCTACAGCTAGAACAAGTCGTATAATTTACTGATATTATATCAGAAATTTCAACCGTAACAACAAATTTTACAATGGCTAGGTACATGAGGCCACCTAACCCATCACTCTTCATTAGAAACATCTCAGACGAATCCAGGCCAGAGGAACTACGCCGCGAATTTGGTCGTTATGGGCCTATTGTAGATGTCTACATTCCACTTGACTTCTCTACACGGCGACCAAGAGGATTTGCTTACATTCAATTCGAGGACGTGCGAGATGCAGAGGATGCCCTCCACAACCTGGACCACAAGTGGGTGTGTGGTCGACAGATCGAGATCCAGTTTGCACAGGGGGACCGAAAAACCCCCAACCAGATGAAGACTAAGGAGAGCTCTCCTCGCAGAGGGTCCCGCAGCAGCTCCTTCTCCCGCTACGACGACTACGAACGCGGCGATGGCCGTCGCAGACGCTCTCGCAGTCGCAGCTACGAAAGGCGCCGGTCGCGTAGCCCTTCCTGCGACCGCCGTCCTCGGAGGTCAGAGAGCCCTAGAGACTCTCGATCATATGGCAGGCACAGGCGAAGCAGAAGCCATGAAAATGACAgGTACAGGGGCCCTCCACGTGAACACCACAGGATGCACCACGCACCCCCGTCTCGTAACCGCTCTGcatcccgctccccctctcctcccagatCTAGGCCCAAAGACACAAAGTCTCAGTCCAAATCCCCCAGCCCCGTCAAGGACTTCCACCCCTCTTCTGGCTCCCAGAAACAGGCCTGTCGACGCTCCTACTCCAGATCTGTGTCCCGATCTCGCTCCAGATCCTAGGACCCCACCACCCTCAAACCCTGTTATTCTGTAGCTAAAGATATTTTTGTTCAACACTACAACATATGAATATGGTATCTAGGGAGTGGTTATTCCACACCCCACCTCGGTTCATTAGTTGAGTTATTATGATATCTCTGGGCTGATGCCATACAACAGGAGAGCTGGTTGTCCCTACAGATGGATAGTACTTTTTTTTATGTTAGTTCAGTTTCATTCACCTCTGGAAAAACATTGTCTGTTTTTGATTTACATTCATATCAGTTTAATTCTATTAATTGAGAACCCAATGGATTTAAGTTCAGCACATAAGAATTGGTCAACTATGAAATGCAAAGGTACAGTTTTGGGCTAATGGGTATTAACCTCTAGCTACAGAAGAGTCCAAAAACCCATTTATAAGAAAAAACAAGTTAAATCTGGAGTTTGCAGTGATATCTAGCCATCAAGTTAACTGCTTTTATTTTTGTACATTTGATGTTGCTGAAGTCTCccgcattttttttatttgatatcaattgttattttgtgttcaaATCGAGCAGCGGTGTTTTCTTTTTGTGGATTAAAAATGTTACGTTTTAACTTTTGTTAATCA

Function

NR:

description
serine/arginine-rich splicing factor 10-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12900 SRSF10, FUSIP1; serine/arginine-rich splicing factor 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947491.1 False 1395 mRNA 0.48 6 36835181 36839924
XM_021561355.2 True 1513 mRNA 0.47 6 36835541 36839924

Neighbor

gene id symbol gene type direction distance location
LOC110488894 LOC106605182 coding upstream 8100 36825735 ~ 36827081 (+)
LOC110534928 LOC106582914 coding upstream 10099 36813770 ~ 36825082 (+)
LOC118939566 NA coding upstream 54516 36778018 ~ 36780665 (+)
LOC110533757 NA coding upstream 87934 36745080 ~ 36747247 (+)
LOC110488885 LOC106605145 coding upstream 103043 36721148 ~ 36732138 (+)
cnr2 LOC106605139 coding downstream 19784 36859708 ~ 36870284 (+)
LOC100499584 LOC100379100 coding downstream 34558 36874482 ~ 36898752 (+)
LOC110488922 LOC106605138 coding downstream 67339 36907263 ~ 36915609 (+)
LOC110488936 LOC106605137 coding downstream 79720 36919644 ~ 36922258 (+)
LOC110488952 LOC106605136 coding downstream 87144 36927068 ~ 36946094 (+)
G137712 NA non-coding upstream 48074 36786726 ~ 36787107 (+)
G137711 NA non-coding upstream 48623 36786357 ~ 36786558 (+)
G137702 NA non-coding upstream 61671 36773150 ~ 36773510 (+)
LOC110488878 LOC106561205 non-coding upstream 120140 36712084 ~ 36715233 (+)
G137770 NA non-coding downstream 63991 36903915 ~ 36904132 (+)
G137772 NA non-coding downstream 65541 36905465 ~ 36905799 (+)
G137775 NA non-coding downstream 109052 36948976 ~ 36949256 (+)
G137778 NA non-coding downstream 112978 36952902 ~ 36953127 (+)
G137787 NA non-coding downstream 128255 36968179 ~ 36968620 (+)
LOC110488849 LOC106605147 other upstream 433210 36354883 ~ 36405310 (+)
G137058 LOC106605156 other upstream 734904 36099611 ~ 36100277 (+)
G136994 NA other upstream 797440 35982832 ~ 36037741 (+)
LOC100653444 LOC106584591 other upstream 978781 35855149 ~ 35865269 (+)
LOC110488639 LOC106605005 other upstream 1047711 35785691 ~ 35788114 (+)
G139004 NA other downstream 937137 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 1079811 37919735 ~ 37940714 (+)
G139101 NA other downstream 1103818 37943742 ~ 37944012 (+)
G139179 NA other downstream 1211435 38051359 ~ 38051744 (+)
LOC110489834 eny2 other downstream 4699371 41539240 ~ 41541654 (+)

Expression


Co-expression Network