LOC110488936 (LOC106605137)


Basic Information

Item Value
gene id LOC110488936
gene name LOC106605137
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36919644 ~ 36922258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561423.2
CCTGGTAAAGATGGGGGATTGGAATTTCCTAGGGGGGATATTGGAGGAGGTGCATATCCACTCCACTATGGTGGGAAAAATCTGGCTCACCATTCTATTCATCTTCCGCATGCTGGTGTTGGGTGTGGCGGCCGAGGACGTGTGGAACGATGAGCAGGCCGACTTCATCTGCAACACGGAGCAGCCCGGGTGCCGGAACGTCTGCTACGACCTGGCTTTCCCCATCTCCCTCATCCGCTTCTGGGTCCTTCAGGTCATATTTGTCTCATCGCCCTCACTGGTGTACATGGGCCATGCTCTCTACCGCCTCCGAGCCCTGGAGAAGGAGCGGCAGAAAAAGAAGGTCCTGCTACGTCGCGAGCTAGAGCTGGTGGACGTGGACATGGTGGCTGCTCGGAAAACGATTGAGCGAGAGGTGAGGCAGCTGGAGCAAGGCAAGCTCAACAAGGCTCCGCTGTCGGGGTCCCTGCTGCGCACCTACGTGGCCCACATCATTACCCGCTCCGCCGTGGAGGTAGGCTTTATAACGGGCCAGTACATCCTCTATGGCTTCcagctctcccctctcttcaAGTGCGAGCGTGAGCCTTGTCCCAACGCGGTGGACTGCTTCGTTTCCCGGCCCACAGAGAAGAGTGTCTTCATGGTCTTTATGCAATGCATTGCTGTAGTCTCCCTCTTCCTAAACATCTTGGAGATCATGCACCTGGGCTACAAGAAGGTCAAGAAGGGCATCCTGGATTACTATCCACACCTGCAAGACGAGCTTGACGACTTCTACTCAAGCAAAACCAAGAAAGACTCCGTGGTGCATCAGACAGGCATTGCTTCCTCCGGCTGCAATCCCACCATGGCCTCCGCGCCCAGTGGCTACAACCTCCTACTGGAGCGGGCCCAGGAGGGTCACACCTACCCCCCCCTTATCAACCCCTCTGCCTTCCTCCCTGTTCAGGGTGAACTGGCTGGTAAACGGAGCGTGGAAGAACTCAAAGATGCTGCACATAGCCCGACGGAGCACAACTCCAACTCCAATAACACCAGCAGTGACAGCCGCTCACCGCCCTGCGACTCAGTGACCCCGCCAAAGCAGGAGGAGCCAGAGGAGTCTGCACACCTTCCCCCTCACAgcgaggaagagaagagggggagccCAGACTCTCCCAGGCGCCCAAGGGATGCATCTCATGCCTCCTCCTGCCCGACATTGCTAGTAGGCGCCGGAAGGAAAACATGGAGGGTCAACGCTCCCTCAAATTGTTCCACAGTGGTGGAGGGCAAAAGCTCAGACACAGATTCTTATGGGGGTGCTAAGGCCAGTGGTGGGTACCAAGCCCGGACTGCGTCGAAATCGGAACCCAAAATGCGTCCCTCCACCCCAGACTCACTGGGGGACTCAAGTTCAGGGTCACAGCACAGTCCGAGAACACCCTCTTCCAATCGCCGACCATCATCCACAAGCAACGCAAGTAGTAGGCGAGCTCCTACAGACTTACAAGTCTGAATGCTAAGAGTAAAACCTTATCCCTTGTCCCTCAGAcaaaaaaaatactttatttCAAACACAGGGATCAGAAGAACATGACATGAGTTGTGACATTGTGCGAACTGCTTCGGAGGGAAATCTGTTGCAGTAGTCCAGCAAAATGGATAGATGTGTTTTATAAGATGTCACCTCTGTTTCTGTTGATCTCTATGTGGTGGTTTATTTTTGTATTCACCAGCTTCAAAGCCTCCGTCATGCTTTGTGATGACGTAAGACACAGTAGATCAAACATTGGGTGTGGGGACTAGCTATTGGGAATATTGACCTGCTTTTAAATGTGTTGTGGCTAAGAGAGAAAAACACTGGAACAGTACAGATCACACAGCAGTGACACCGTTAATGCTTTCTGTAGGTTTCAGTTCATTTTAAACACCATTGTTTAGAGAGAAACCATGAAAATATGTCCTCATGGCAGCCAAATTCAGAATTTTGTTTctctaattggtcttttgaccaatcagatcagctctgaaaaatatctgatatGAAAAGATCTGATtgatcaaaagaccaattagtggaaaaagatcagaattgggctgcctgtctaaacgcagccaaaGTAGCTTTTGACCACTGAAAATAGAGTATGTAGACTAAATGATGTATATGTACATTGCATGAAAGAATGACCTAATTTCATATTTATAAAAGCATATATCTTGGTTTTTATTTTGCATTAACTACTGTATGTCCATACTATCATCGTAAAACCATGTATGACGGTTACAATGGCCCTCCACGTTCTTTTAGGCACAGCTTTTCTTTTAAGGGTTGTGGGGTATTTCAGTTTCTTATGCATTTCAAGTAACGCCAGCAGAGCCTCTGTGTGCACACAGTACAAAAGTGATATCATGAGGTAAGATTTCTATATTGTAACAAATATGTGAACGTGATTAAAAAGGAAAACACCCATTACGTTAATGTTTGTTTACTAGATACAAAACATTGGTGTACAGTAGGTTAAGTACACAAAGCAGAAAAGGGGGGTTTGCTTTTATGAGGGGAGACAGTCAAAGGACAAAAGCTATTATATTTCAATATATcaaatatacaaaaaaaaaagaaaaaa

Function

NR:

description
gap junction alpha-9 protein-like

GO: NA

KEGG:

id description
K07618 GJA9; gap junction alpha-9 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561423.2 True 2615 mRNA 0.48 1 36919644 36922258

Neighbor

gene id symbol gene type direction distance location
LOC110488922 LOC106605138 coding upstream 4035 36907263 ~ 36915609 (+)
LOC100499584 LOC100379100 coding upstream 20892 36874482 ~ 36898752 (+)
cnr2 LOC106605139 coding upstream 49360 36859708 ~ 36870284 (+)
LOC110488899 LOC106582930 coding upstream 79720 36835181 ~ 36839924 (+)
LOC110488894 LOC106605182 coding upstream 92563 36825735 ~ 36827081 (+)
LOC110488952 LOC106605136 coding downstream 4810 36927068 ~ 36946094 (+)
LOC110488961 LOC106605135 coding downstream 352064 37274322 ~ 37278025 (+)
LOC110488976 LOC106605133 coding downstream 425398 37347656 ~ 37396662 (+)
gnl2 nog2 coding downstream 650146 37572404 ~ 37603294 (+)
LOC110488991 LOC106605131 coding downstream 684835 37607093 ~ 37621875 (+)
G137772 NA non-coding upstream 13845 36905465 ~ 36905799 (+)
G137770 NA non-coding upstream 15512 36903915 ~ 36904132 (+)
G137712 NA non-coding upstream 132537 36786726 ~ 36787107 (+)
G137711 NA non-coding upstream 133086 36786357 ~ 36786558 (+)
G137702 NA non-coding upstream 146134 36773150 ~ 36773510 (+)
G137775 NA non-coding downstream 26718 36948976 ~ 36949256 (+)
G137778 NA non-coding downstream 30644 36952902 ~ 36953127 (+)
G137787 NA non-coding downstream 45921 36968179 ~ 36968620 (+)
G137791 NA non-coding downstream 53135 36975393 ~ 36975598 (+)
G138244 NA non-coding downstream 146680 37068938 ~ 37069207 (+)
LOC110488849 LOC106605147 other upstream 517673 36354883 ~ 36405310 (+)
G137058 LOC106605156 other upstream 819367 36099611 ~ 36100277 (+)
G136994 NA other upstream 881903 35982832 ~ 36037741 (+)
LOC100653444 LOC106584591 other upstream 1063244 35855149 ~ 35865269 (+)
LOC110488639 LOC106605005 other upstream 1132174 35785691 ~ 35788114 (+)
G139004 NA other downstream 854803 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 997477 37919735 ~ 37940714 (+)
G139101 NA other downstream 1021484 37943742 ~ 37944012 (+)
G139179 NA other downstream 1129101 38051359 ~ 38051744 (+)
LOC110489834 eny2 other downstream 4617037 41539240 ~ 41541654 (+)

Expression


Co-expression Network