LOC110488952 (LOC106605136)


Basic Information

Item Value
gene id LOC110488952
gene name LOC106605136
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 36927068 ~ 36946094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561449.2
CGGAGGTGGTTCAAGAGCAGGGTTTTCGGCGAAAGGGAAACATAGGGGACCCGAAGATCTAAAGGATAAGGGAGAATATTACAACACACTCTGGATTTGCAAGTAACATTGGCATAATTGATGCATTTAAACTGTATTTTAGGTTTTATCGGCGGTGTGGAAGGATCTGTCGGTAAAAGCAGGACTGCGTAAAACTAATAGGGTGAGGGGGGGATTGGGGAAGCGAGAGTTGTTGGGTCAAAATGTCGATTCAGTACGAAGTGGAACCGTTGGCAGACAGCTACGGGGTTGCGGACTCGTTTCCCAAAGATTTTGGATATGGAGAAGAGGAGGCCGACATCGAGGATAGCCCAACTCCATCTGACAGCAAACCTAGAATTCTGTTAATGGGTTTGCGAAGAAGTGGCAAGTCGTCAATACAGAAGGTGGTATTCCACAAAATGTCTCCTAACGAGACGTTGTTCCTGGAGAGCACCAACAAGATCTACAAGGACGACATCTCCAGTAGCTCGTTTGTCAACTTCCAGATCTGGGACTTCCCGGGTCAAGTGGACTTCTTCGACCCCACCTTTGACTACGAGATGATCTTCAGAGGCACGGGTGCTTTGATATTTGTCATTGACGCACAGGATGACTATGTGGAGGCGTTGGGCAGACTCCACCTCACCGTGTCGCGGGCCTACAGGGTCAACCCTGAGATTAACTTTGAGGTGTTCATCCACAAAGTGGACGGCCTCTCCGACGACCACAAGATCGAGACCCAGAGGGACATCCACCAGAGAGCCAACGACGACCTGGCAGACGCCAGCTTAGAGAAGCTTCACCTCAGTTTCTATTTGACAAGTATCTATGACCACTCAATATTCGAGGCCTTCAGTAAAGTGGTTCAGAAGCTTATCCCACAGCTGCCAACACTGGAAAACCTTCTAAACATCTTTATATCCAACTCGGGCATAGAGAAGGCCTTTCTGTTCGACGTGGTCAGTAAGATCTACATCGCCACAGACAGCAGTCCGGTGGACATGCAGTCTTATGAGCTGTGCTGTGACATGATCGACGTGGTTATAGATGTCTCCTGCATCTATGGTCTGAAGGAGGATGGCAGTGGTAGTGCCTACGACAAAGAGTCCATGGCCATCATCAAGCTGAACAACACCACAGTCCTCTACCTGAAAGAGGTCACCAAGTTCCTGGCGTTGGTCTGCATCCTCCGAGAGGAGAGCTTTGAGCGCAAAGGCTTGATAGACTACAACTTCCACTGTTTCCGGAAGGCCATCCACGAGGTGTTTGAGGTGGGTGTTTCCACACCGTGGACGGGCTCCCAGGCGGCCGGCACGCCCTGCACCAAGGCTGTGACACTCAACGGCACGCCCCGGAGCACTGTCTAAACACAAatagacagacggagagagaggataggaaaggacagaaagataGAAAAGAAAGATGGGGAGGGATCGTGCGGAAAAGACTAATGGATTGGGGTTTTCAGTAAACCAATCATAACTCTCGCACCCAGATCCTAAAAATCACAGGAAGAGGACTAGAGCTAAAAATTCAAATGAAGAGTCAGGGCTGAACCCGAAGCTCAGAGGGTAAGGAGGACTGCGAGCTTACAAAGCTAGGATGAAAGGGAAACTGAATGCAGAGAAACTAGGAACATTCGTACATTTCGTGTGAATGCAAGGCATTGTTTTCCGCTGTTTGGCACTCTTTGCCACGAGTAAAAACAGCTAAATGAAAGTCCAACAGGACTGGTATACGTAAGCAAAATCGTATTTGGCATTTGGGAACTTTCAGTGAGAGAGGCTTGACGTGCTTCAAGTCCCAAGAGACCTGAGGAAGCTTGGTAATATCGTTGTCTGTTTTAGCTGCTGGTTCATCCATGTGAAGAagtacttttaaaaaaaaaatgtaaacgttGATGTAACCCTCGATAAGGAGAAGAAACTGCATAGGCTGTAACGGGGATCAGTATAGTTGTGTAACCCTGTGCATACTTATGGGTCGAAGTCTCTAAGAAATGCTTGGTGTTTATCCAAAACGCACATGGTAACACTTTCTCAAGGCCTTATTTAGATAGAAAGCTTGCAGCAGGCAAGCTCAATCACTACTCACCCGCCTGTATGCTGCCCAAGACTTTGCTTCTGGTTTCATTCATTCTGAAGAAAACAGGGTTCCTCAGAGTGCAAAAGGGATTGTAGTGTCCACTTTTTCTGCttttgttcgtgtgtgtgtgtgtgtgtgtctggaaaaGAGGATAGTTGGGGATTATGGATTCATGACTGCCCCATGTTGATTTGCCAGTGCAGGCCCTATGCTCAAAGTTGCTGTAGTGTCATACTGTATAATGCTATGCCATGTTGGAAAATTGCGCTAAAGAATAAACCTGTTACCAGCGGTTTGATCAGTGATGCTTATAGATTCTGAAACAACATTATAGATTCTAACTAGGATTTGTTGCAGTTGGATATCTGATTCATTAGAATCTTGCACAGACAAAACATTCTATATTTTGTCTTCTGAAAATAGTCCATTGCATTGGCTTATTCTCTTGGTTTGGCTATCAAATGATGTATGCAGTACAAGCACATTCTAGATATATATATCTCCCTTGTGCATAAAGTAGTCAGTTTAGCCATATCTTCTGACACTCAATCGTAATACTGCCCCGCATGGATGCTTGCCATAGACCAAATGCTACTAACAGCCAACCAACTATACCAATCTTCAACTAATGTGTGCAACTCATACATTTATGACATCACAAGTTCTTTGAGCATGACCCTTCTCTTTACTGAAGCAGGTGGAGTCCGATGCCATTAGGAATGAGCtaatctggtcccagatctgtttgtgcggtCTTGCCAAGGCGTGACAATGAATAAAAGAGTTGGCAAGACGGCACAAACAGATCACGGACCAGCCTAACTAGGAAAGGTCTCTGATGGGACCTATACATTCCGGTTGTGTGGCACCAATTGACATTATATCATTTAATGATGGTTATGATCATGATAAACAGAATGGTGGCAATGAAATGCCAGTCACCACTTCAAACCCTGCCTTACGTGACTAGTTGTTTAATTCACTCATCCCCCATCgcacaggggcggcaggtagcctagtggttagagcgttgggctagtaacaaaggttgcaagatcgaatccccgagctgacatggtaaaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaattgacatgCAAAGTTAAATAATGGTACAattaaaaacatttgtttttaaatcGCGCCGTCTGACGCATATAGGACAGCAACAACGGCTTTCCACTTCTGGCACTTTGGAAATCTTCTCCATTGTGCTTTAGCTTTGCTGATGTTGATCAGCATTTCAGTGTCTATTAGGTTTGTCTCAGAGCCTCAAGGAGTTGGGCCATTGCTTGTTTGTCTGAGGAGGTTGGCGTTTAATGCATTAGGCCAACAGATGTGGAGTATTCTTCGCAGACAAGTTGCGTGTAAGGTGAATTGTTTATTCTGGTCAGTCACTTTCCAACACTCTgtaccatacaacacaacactggtGGATTTAGAATTTGATCTTTGTGCTGTTATCTATCATCTTGACTTACAAATTTGTTGGAACTTTATGAAGGTTTCACTTTAGCTGAGGGTTCTGCTCAAGGACTTTGTCAGTTTTATCACAGCAATCCAcacgaaaaaaaaaaagaaacgcagCATGAAGCCGATATGAAAACCCATTCCAAGCATGTATGCAACAACGTGTCGTCAAGCTAAATGATTCTCAACATAACATTGCTCATTGTATTTCACTGTGGGTAAGAGAGACCAGGTCTAACCATGAAAATGAATCCTGGGAAAAAATGACCAAATTGCATTATTCTGCCCTGAATGCAAGAAAGGTTGTTTTTTTTGcctgtgtttgttttgttcatttgaTTTTTGCAAATAGTAGACATTTGGGACTATAGTAAATCCACTGTTGTCAGTTCTGCCAAAAGTTTTATCATTCACATGAAATAAATACTTGCACATCAAAA

Function

NR:

description
ras-related GTP-binding protein C

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16186 RRAGC_D; Ras-related GTP-binding protein C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561449.2 True 4091 mRNA 0.44 7 36927068 36946094

Neighbor

gene id symbol gene type direction distance location
LOC110488936 LOC106605137 coding upstream 4810 36919644 ~ 36922258 (+)
LOC110488922 LOC106605138 coding upstream 11459 36907263 ~ 36915609 (+)
LOC100499584 LOC100379100 coding upstream 28316 36874482 ~ 36898752 (+)
cnr2 LOC106605139 coding upstream 56784 36859708 ~ 36870284 (+)
LOC110488899 LOC106582930 coding upstream 87144 36835181 ~ 36839924 (+)
LOC110488961 LOC106605135 coding downstream 328228 37274322 ~ 37278025 (+)
LOC110488976 LOC106605133 coding downstream 401562 37347656 ~ 37396662 (+)
gnl2 nog2 coding downstream 626310 37572404 ~ 37603294 (+)
LOC110488991 LOC106605131 coding downstream 660999 37607093 ~ 37621875 (+)
LOC110489000 LOC106605130 coding downstream 682058 37628152 ~ 37664293 (+)
G137772 NA non-coding upstream 21269 36905465 ~ 36905799 (+)
G137770 NA non-coding upstream 22936 36903915 ~ 36904132 (+)
G137712 NA non-coding upstream 139961 36786726 ~ 36787107 (+)
G137711 NA non-coding upstream 140510 36786357 ~ 36786558 (+)
G137702 NA non-coding upstream 153558 36773150 ~ 36773510 (+)
G137775 NA non-coding downstream 2882 36948976 ~ 36949256 (+)
G137778 NA non-coding downstream 6808 36952902 ~ 36953127 (+)
G137787 NA non-coding downstream 22085 36968179 ~ 36968620 (+)
G137791 NA non-coding downstream 29299 36975393 ~ 36975598 (+)
G138244 NA non-coding downstream 122844 37068938 ~ 37069207 (+)
LOC110488849 LOC106605147 other upstream 525097 36354883 ~ 36405310 (+)
G137058 LOC106605156 other upstream 826791 36099611 ~ 36100277 (+)
G136994 NA other upstream 889327 35982832 ~ 36037741 (+)
LOC100653444 LOC106584591 other upstream 1070668 35855149 ~ 35865269 (+)
LOC110488639 LOC106605005 other upstream 1139598 35785691 ~ 35788114 (+)
G139004 NA other downstream 830967 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 973641 37919735 ~ 37940714 (+)
G139101 NA other downstream 997648 37943742 ~ 37944012 (+)
G139179 NA other downstream 1105265 38051359 ~ 38051744 (+)
LOC110489834 eny2 other downstream 4593201 41539240 ~ 41541654 (+)

Expression


Co-expression Network