LOC110488961 (LOC106605135)


Basic Information

Item Value
gene id LOC110488961
gene name LOC106605135
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37274322 ~ 37278025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561460.2
CAAACAAGCAGCCCACGGGAGAGGATAACAGAAACCTAGGTCATATTCAGATACCGTAAAGTTATCAATAgactaaaatataaatgtaatataAAGAATTAACATGTTTCTATATAGTATATGTGAAACAGAGACCTATTCGTTATGTGCGTAAAAGGCGCTCTGCAACGTAGGCTATGCCTCTTGTGGGCTTGAATCCATAAGGAGCCAATACAAGCGAAGAGGAGGCGTGTCTTAGCTCTTCTCCGAGACCTCCCAGAGCAGGTTGTTGCGTTTTTAGCTCTAAAGCGTCCAGACCTCCGAAGTACTCGTCAGTTTTCGAAGTAGGAGCCATGGCTACAACAGCTCAGTATATTCCGCGGAATAACTCCTTACCGTCCAACCCTCTCATGCATCCGGATTCGGACAGGATGCACCAGGGGACGACCTACAGAGAGGTGCAGAAAATGATGCACCACGAGTACTTGCAGGGGCTAGCGGCGACCAACACGGGACATCCGATGAGCCTGACGCACCACCAGTGGCTGCCCACCTCCAACACCGACTGGACCAGCGGTACCCATATCGGGCAACAGGAGCACAACAAAGCCAGTGTTCAGGCGAGTCGAGAGGACCTGAGTAGTGGCTTCCACCATAGATCTCACCTGGTGCACCAGCAGACGCAGAGTAGCCACCATGGGTCGTGGGCGCCGACAACGGCGCACCACTTGTCCCCGCTGTCGCCTGCCTCCAACGGGCACCAGTCGCTAGTTTACTCGCAGCCGGGATACACGAACCTCAACGCCATGCTAAGTCCCCAGCCCGCCTCTCTGCACCACAGCATGCGGGACCCGCTCCACGACGATACAGGTAGCCATGACAACCAGATGGAGTCCCCCCAGCAGGCGTTCAGCCACCACCAGGACCACTCAGACGAGGATGCGCCCAGCTCCGACGACCTGGAGCAGTTCGCCAAGCAGTTCAAACAGCGAAGGATCAAACTGGGCTTTACACAGGCGGACGTGGGCTTGGCCTTGGGCACCCTGTACGGAAACGTCTTTTCTCAGACCACTATCTGCAGGTTCGAGGCACTGCAGCTCAGCTTCAAGAACATGTGCAAACTTAAGCCACTGCTAAACAAGTGGCTGGAGGAGACAGACTCAAACACTGGCAGCCCCACCAATTTGGACAAGATTGCTGCGCAGGGCAGGAAACGAAAGAAGAGGACCTCGATTGAAGTTGGGGTGAAAGGGGCGCTGGAAAATCATTTCTTAAAATGTCCCAAGCCCTCCGCCCATGAAATCACCAGTTTAGCCGGCTCTCTTCAATTGGAAAAAGAGGTTGTCCGTGTTTGGTTTTGCAACAGAAGACAAAAAGAGAAAAGAATGACGCCGATAGGGGTCCCTCATCCGAATATGGAGGACGTATATTCTCAAGCGGAGACCCCCCCTCTTCACCACACATTACAGAGTCCTGTGCAGTGACTGTTTTCATGAACAATCCTACAATTTCGGGGGAAACAATAAAAAAAAGGGAAAGGACTATGGAGTTTACAGTATTTCATTTTGTTTTACTGagtgagaaagaacagagacatgGCAAAGTTGGATAGACAGATGAGTTTTGTCCCAGTACCCGGAACTTGTGTTACAACAACAAATAGGTAgaatggaaaatggttgaaaagaAAAACATACACTATTACTGAAATGATTTCGTTCACATTTTAAATGAGACAAATATCTATATTTACCAAAATTCTATGGAGGAGATGAAGTAAATTCGATGTTTCGTGGCTGTTCAAACGGGAACGATTAAATGTTCCAAGTGGTGTCTTGAACTGATGGCGCTCACCACAGTGCGAGGTGGTTGCCTGAAAATGATCAAcaaaggagacacacacacacaattaatatTTTGCCTTTCAGGCTTAAAACCGATTAACCACTATTTCTAATTATTAGCCTATTCTTTATATTTGTTATATTAATTGTGATGTTTGATTTGAACTTCAGTGTCACTTCTGTTCTGTATACTGTTTTATTGTTTCTCTCATTGTATTAGTGTAATGTAACTCATCAAAAACGCCTCCCTTACTCATACTGTTGACACAATGTCACCTGGCCAAAGGAGTTTGTGAAAAGATTATGGAAATTATGGCACCCGTTGATGACAAAAATCCCCACACTTAAATGTCAGATGCATTTCAAAATTGACGAATGCAACAGGACAGCTCACGTCTGGCAGCCTTCAAAAATGTATGCTTTGCAGATAGCAACAGACGCTAAAAAGGGCAATATGGAATAATACTTTATGAAACACGTGTTTTGTCGTTTTTTgtgtatttgtttttattattattttccttTTGTATGGAGCACTTATTATTTCGTTGAAATTATCATTGCAATTTCATATTAGTTTTGTTTTCAGAATTTGTTTTGAGGTAGGCCTTTACTCACTATTTTCATGTTTACAGGTTCCTAAAATCACTCCAGGGCGCCGTCAGCAACTTGCATTGCTAACTGCCAAGCTATTCCAACCACCTTTGGAAAGAGATTGGTCTAATACGAAATGAAAGTGATATTCTCAGGTAACTTCAGTGCCCCAGGTCGAAGTGTCACGCTGTTCTCATTCTTTATATCACAATAAAAAGTAGAACTCGAATTCTGTACCTTCTATATTGATCTGAAAGGTAGCTTATGCTACGCCCCATTCATTTATACCATTCCTATTATTGTATTATAACCACTATATACGGAGAAATTCTGAAAATTCTCTATTGAAAAGTGATAAAGAGACCGGTTTTAGATATTTTTCTGATATGGAGAAGAAAGGAAAACGGATTAATTAGCCTACTCGTGCGTTGCGTGTCATTTCTCAAGGGTCTGGTACATTCTGATGGACAGTAGCCCAATTGCGTACTGCAGACAGTGCTATTCGATACAGCGGGGAAAAAACAACTTTCTTCAAAAAAAGATTTGAAATAAAATGTTGCCAGGATTATTTCCAATGTGTAAATATGTCGAATATGTAAACATGTATTTGTTCTgagatatttttttgtttgttttgtttttcggGCAGTTTTGTACACTTACTAATTCCAAGAAGATATTTTAATATGATTTCATTTATGAATCTgaccatttatatatatatttatttcctAAATGTGTTTGGAGCTTTTTGTTTGGCTCTGTTAATGGTTATGTTGCAGTGGAATTCAATATGTTTTGTTTACTACATTGGTTGTATGTTGATTGCTAAATGTAGGCTGCAAAGTCACATTTCTCCTATTTATGTTATAGTAATATTTTATTACTTACATAAAGCGTATACACAAGAAAAGGTATTTTGTCTTCATTAAGAAACCAAACCGTTTTCCTTTGTTGCTAACCATTGTGAAACCACcagatgagaaaaaaatatatacaaatgtatgtggTAAACAAAAATCCAATGCACTAAGATAGTGTGTTGTGCTTAACCACTCTGATTTAAGCCGTCAGAAAGTGTTGACCTCAACATGTGTTCAGTTTAAACCAGTATTCCGTTATGTAATTGGGATTCATTTAAATCAGAGGCTGTGTACATGTGCTGTTTTAAAGGGAATAGACACAACAGTATGTTTACCTCAGGCATTCATATCCGCATCAAGTCCACAACATCCCTGACGTTGTTCACATCTTTGTGTAATCGCAGTATTAAATTGTGCAATATTA

Function

NR:

description
PREDICTED: POU domain, class 3, transcription factor 1-like

GO: NA

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561460.2 True 3704 mRNA 0.42 1 37274322 37278025

Neighbor

gene id symbol gene type direction distance location
LOC110488952 LOC106605136 coding upstream 328228 36927068 ~ 36946094 (+)
LOC110488936 LOC106605137 coding upstream 352064 36919644 ~ 36922258 (+)
LOC110488922 LOC106605138 coding upstream 358713 36907263 ~ 36915609 (+)
LOC100499584 LOC100379100 coding upstream 375570 36874482 ~ 36898752 (+)
cnr2 LOC106605139 coding upstream 404038 36859708 ~ 36870284 (+)
LOC110488976 LOC106605133 coding downstream 69631 37347656 ~ 37396662 (+)
gnl2 nog2 coding downstream 294379 37572404 ~ 37603294 (+)
LOC110488991 LOC106605131 coding downstream 329068 37607093 ~ 37621875 (+)
LOC110489000 LOC106605130 coding downstream 350127 37628152 ~ 37664293 (+)
LOC110501519 LOC106605129 coding downstream 421190 37699215 ~ 37763715 (+)
G138367 NA non-coding upstream 87924 37186148 ~ 37186398 (+)
G138350 NA non-coding upstream 109535 37164522 ~ 37164787 (+)
G138343 NA non-coding upstream 116017 37157915 ~ 37158305 (+)
G138340 NA non-coding upstream 119242 37154867 ~ 37155080 (+)
G138263 NA non-coding upstream 193510 37080585 ~ 37080812 (+)
G138503 NA non-coding downstream 27422 37305447 ~ 37305679 (+)
G138515 NA non-coding downstream 45659 37323684 ~ 37323896 (+)
G138501 LOC106605134 non-coding downstream 58054 37336079 ~ 37337074 (+)
G138522 NA non-coding downstream 62931 37340956 ~ 37341211 (+)
G138558 NA non-coding downstream 122782 37400807 ~ 37401048 (+)
LOC110488849 LOC106605147 other upstream 872351 36354883 ~ 36405310 (+)
G137058 LOC106605156 other upstream 1174045 36099611 ~ 36100277 (+)
G136994 NA other upstream 1236581 35982832 ~ 36037741 (+)
LOC100653444 LOC106584591 other upstream 1417922 35855149 ~ 35865269 (+)
LOC110488639 LOC106605005 other upstream 1486852 35785691 ~ 35788114 (+)
G139004 NA other downstream 499036 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 641710 37919735 ~ 37940714 (+)
G139101 NA other downstream 665717 37943742 ~ 37944012 (+)
G139179 NA other downstream 773334 38051359 ~ 38051744 (+)
LOC110489834 eny2 other downstream 4261270 41539240 ~ 41541654 (+)

Expression


Co-expression Network