LOC110488976 (LOC106605133)


Basic Information

Item Value
gene id LOC110488976
gene name LOC106605133
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37347656 ~ 37396662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561486.2
acagtacagtccGAAGGTTCGAAGTCAGAGGGAGGAGATTTTTCTCCAATATCGGGGCGGGGTCTTGTGACTCACCATCAACTTCCTCATAGACAGTAGGGCCGGTGAACTGTGTTACACTTCAACATTGTACAGTTAGAGGTCTGAGTAGACTGCAGGGAAAAGGAACGGGAAAAATTGTACAGTATAATAATCTGCCACTGGAGTAGCGACCGGCAGAAATTCACATCGTTTGAATGTCTGGTGACACAGCGCGAGAGGTGGGCTTCGATTGTCAAGTCGCAAAGGTGCATTCAACAGCAGATATAACGTCGGGGATGGAACAAGTCACAATGAGCGACCGGTTCGACTGCGACAACTGCAAGGAGTCCCTATACGGACGCAAGTACATCCAGgcagatgggggagagggggacaacCCCTACTGCATCCCCTGTTACGACAGCCTGTTCGCCAACACCTGCGACGAGTGCAAGGAGCTAATAGGCCATGACGCCAGGGAGCTGTTCTACGAGGACCGGCACTACCACGAGCACTGTTTCCGTTGTTTCCGCTGTGACCGCTCGCTGGCGGACGAGCCCTTCACCAGCCAGGACGAGGCGCTGCTGTGTAACGACTGCTACTGCAATGAGTTCTCATCCAAGTGTGTGGCCTGCGACAAGACCGTCATGCCAGGCACAAGGAAGTTGGAGTATGGTGGCTCCACATGGCACGAGGGATGTTTCATCTGCCACAGCTGTGAGCAGCCCATCGGCTCCAAGTCCTTCATCCCAGACAAGGATGAACACTACTGTGTGTCCTGCTATGAGGACAAGTTCGCCCCGCGCTGCACCCGCTGCAAAAAGgcCCTGGCTAAAGGGGGCGTGACGTATCGGGATGAGCCGTGGCACAAGGAGTGTTTTGTGTGTTCGGGCTGCAAGGTGCAGCTGGCAGGGCAGCACTTCACCTCGCGCGAAGACAACCCCTACTGCCTCAAGTGCTTCGGCAGCCTATACTCCAAGAAGTGTGAGGCATGCAGCAAGCCTATCACAGGTTTTGGCGGAGGGAAGTACATCTCGTTTGAGGAGCGCCAGTGGCACCAGCCCTGCTTCACCTGCACAGAGTGCTCGGTCTCTCTGGTGGGGGCGGGCTTCTTCCCCAATGGAGACCAGATCCTGTGTCGCGACTGCAACACCAATAGCAATCTATagaccacacacagacaccgtaTCGCccctctcctcacacacacacctaggtcAACCCCAGGGCCCCCCATCACTGCCAAGGTTGTTAACACAGACTGCCTCTCAGGTCATGCCAACACACACAACTTGCTCACTAGACCACAGCTCGATCCCTCATCCTCCCCCAGAGCTTTCTGTTGCTTGCTGTCAAATACCAGAGCTAAGCATCAGGCTACTGaggcacagacagacaaaaaTCAGCCAGACTAAGGTTGATCTAACTTGGCAGAGGCACGTTTTCATTGTCTTCTTTGCCAAATAGACCTACTTTTCCTTCACCTGTATGTATGAGTGACTTTTAGGTCAGATTATGTTTGGTTTAACAGAGGAAAAAGTCTTATCTTTGAACAGAACTGAACCGTTATGAACGATTAACTGATTAGTGGTGTCATTTGATGGATTGCCAATGATCTACCAAAGAAATGTACTATCTGCCATCAAAGAATTTAACTGGTATGGGGGAAAACCATGGTTCTGAATTCACTGAAGAATTTAATTCCAGTATCACTACTCCAATATGCTGTATTAGAGGCTATAGCATTTTAATGTGAGGATAACATTGACCAATGTGCAAATTGTCCTTCGAACATTGGCTGAAATCATACTATTTTTGATGTAGTTGCTAtctagactggagaggggagatcCACTCCAAGGCTTTCATTCTCCACAATAAGTTGTGACTGTGGGAAAGTtatgtgcctttaaaaaaatgcCATACTTTATATAGTATGTATTATCAAACCAAAGAAAAGAGAAATGCTTACAGCTATGCATACTTTTTGCTAGATTTTTTTTGTATGAACGCATCACCACTAATCTATGAATGCAACACTTTGCAAAGCAGCCACAGAACACTGATATTTACTACATTGTAAATATGTTATGCAAGTAAAATACGTTTGAGTGATTTCAATGCTGATAATTGCAGTTTTGTGACATACGACTGTTCTCCTGTGTCAATTAGGTTTCAGAGCAGTATTTGCTGTCATGCTTTAGTTGTTACTTAACCTGTAGTCGTATCATGATTTATTTGAAGAGAATAATATGTTGCAGTGGTTTGTTTATGCAGTTGTCAAACACTTTATAGTATCCCGAAGAATAGGTCCAAGAGATGAAGAAAAAAATAGAAATTGAGAGAACGTGAAAAGAAAGAAAGCTTGGTGTACTGGAGAAAACCAATGAAGTCAGTTAAGACATAAGGAAAGCGTTGTCATGTATTTGCACTATGGCTAAAATATTCCCCGTGCTCCCAGAATTTGTGAACATACAAACGCAACTCGAGCATTTTATATATGGGGCAACACCTAAACCACTCTTTGCCTTTTTTAAATAACTATTGTTTACTTTTTTTCCATATTGACACTTATCTATGATGTTTTTTTGTCAAGCATATTTCATTTTTTCGCCTTTGTATTTAATCTTTCTGTTACTATCGCTGTCGTTTGATAATAAATGGGCTAGTCCCAAAGAAGCTGA
>XM_021561494.2
ACCGGATGTTCTGGCTGAGAATGAGAGACTTCAACCCCAATCAACGGCCTTGAAAGAGTAGAGAAAGTCAGAGGAAAAGGCACTGGGATGGAACAAGTCACAATGAGCGACCGGTTCGACTGCGACAACTGCAAGGAGTCCCTATACGGACGCAAGTACATCCAGgcagatgggggagagggggacaacCCCTACTGCATCCCCTGTTACGACAGCCTGTTCGCCAACACCTGCGACGAGTGCAAGGAGCTAATAGGCCATGACGCCAGGGAGCTGTTCTACGAGGACCGGCACTACCACGAGCACTGTTTCCGTTGTTTCCGCTGTGACCGCTCGCTGGCGGACGAGCCCTTCACCAGCCAGGACGAGGCGCTGCTGTGTAACGACTGCTACTGCAATGAGTTCTCATCCAAGTGTGTGGCCTGCGACAAGACCGTCATGCCAGGCACAAGGAAGTTGGAGTATGGTGGCTCCACATGGCACGAGGGATGTTTCATCTGCCACAGCTGTGAGCAGCCCATCGGCTCCAAGTCCTTCATCCCAGACAAGGATGAACACTACTGTGTGTCCTGCTATGAGGACAAGTTCGCCCCGCGCTGCACCCGCTGCAAAAAGgcCCTGGCTAAAGGGGGCGTGACGTATCGGGATGAGCCGTGGCACAAGGAGTGTTTTGTGTGTTCGGGCTGCAAGGTGCAGCTGGCAGGGCAGCACTTCACCTCGCGCGAAGACAACCCCTACTGCCTCAAGTGCTTCGGCAGCCTATACTCCAAGAAGTGTGAGGCATGCAGCAAGCCTATCACAGGTTTTGGCGGAGGGAAGTACATCTCGTTTGAGGAGCGCCAGTGGCACCAGCCCTGCTTCACCTGCACAGAGTGCTCGGTCTCTCTGGTGGGGGCGGGCTTCTTCCCCAATGGAGACCAGATCCTGTGTCGCGACTGCAACACCAATAGCAATCTATagaccacacacagacaccgtaTCGCccctctcctcacacacacacctaggtcAACCCCAGGGCCCCCCATCACTGCCAAGGTTGTTAACACAGACTGCCTCTCAGGTCATGCCAACACACACAACTTGCTCACTAGACCACAGCTCGATCCCTCATCCTCCCCCAGAGCTTTCTGTTGCTTGCTGTCAAATACCAGAGCTAAGCATCAGGCTACTGaggcacagacagacaaaaaTCAGCCAGACTAAGGTTGATCTAACTTGGCAGAGGCACGTTTTCATTGTCTTCTTTGCCAAATAGACCTACTTTTCCTTCACCTGTATGTATGAGTGACTTTTAGGTCAGATTATGTTTGGTTTAACAGAGGAAAAAGTCTTATCTTTGAACAGAACTGAACCGTTATGAACGATTAACTGATTAGTGGTGTCATTTGATGGATTGCCAATGATCTACCAAAGAAATGTACTATCTGCCATCAAAGAATTTAACTGGTATGGGGGAAAACCATGGTTCTGAATTCACTGAAGAATTTAATTCCAGTATCACTACTCCAATATGCTGTATTAGAGGCTATAGCATTTTAATGTGAGGATAACATTGACCAATGTGCAAATTGTCCTTCGAACATTGGCTGAAATCATACTATTTTTGATGTAGTTGCTAtctagactggagaggggagatcCACTCCAAGGCTTTCATTCTCCACAATAAGTTGTGACTGTGGGAAAGTtatgtgcctttaaaaaaatgcCATACTTTATATAGTATGTATTATCAAACCAAAGAAAAGAGAAATGCTTACAGCTATGCATACTTTTTGCTAGATTTTTTTTGTATGAACGCATCACCACTAATCTATGAATGCAACACTTTGCAAAGCAGCCACAGAACACTGATATTTACTACATTGTAAATATGTTATGCAAGTAAAATACGTTTGAGTGATTTCAATGCTGATAATTGCAGTTTTGTGACATACGACTGTTCTCCTGTGTCAATTAGGTTTCAGAGCAGTATTTGCTGTCATGCTTTAGTTGTTACTTAACCTGTAGTCGTATCATGATTTATTTGAAGAGAATAATATGTTGCAGTGGTTTGTTTATGCAGTTGTCAAACACTTTATAGTATCCCGAAGAATAGGTCCAAGAGATGAAGAAAAAAATAGAAATTGAGAGAACGTGAAAAGAAAGAAAGCTTGGTGTACTGGAGAAAACCAATGAAGTCAGTTAAGACATAAGGAAAGCGTTGTCATGTATTTGCACTATGGCTAAAATATTCCCCGTGCTCCCAGAATTTGTGAACATACAAACGCAACTCGAGCATTTTATATATGGGGCAACACCTAAACCACTCTTTGCCTTTTTTAAATAACTATTGTTTACTTTTTTTCCATATTGACACTTATCTATGATGTTTTTTTGTCAAGCATATTTCATTTTTTCGCCTTTGTATTTAATCTTTCTGTTACTATCGCTGTCGTTTGATAATAAATGGGCTAGTCCCAAAGAAGCTGA

Function

NR:

description
four and a half LIM domains protein 3 isoform X1

GO: NA

KEGG:

id description
K24414 FHL3; four and a half LIM domains protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561486.2 False 2705 mRNA 0.46 6 37347656 37396662
XM_021561494.2 True 2475 mRNA 0.45 6 37379538 37396662

Neighbor

gene id symbol gene type direction distance location
LOC110488961 LOC106605135 coding upstream 69631 37274322 ~ 37278025 (+)
LOC110488952 LOC106605136 coding upstream 401562 36927068 ~ 36946094 (+)
LOC110488936 LOC106605137 coding upstream 425398 36919644 ~ 36922258 (+)
LOC110488922 LOC106605138 coding upstream 432047 36907263 ~ 36915609 (+)
LOC100499584 LOC100379100 coding upstream 448904 36874482 ~ 36898752 (+)
gnl2 nog2 coding downstream 175742 37572404 ~ 37603294 (+)
LOC110488991 LOC106605131 coding downstream 210431 37607093 ~ 37621875 (+)
LOC110489000 LOC106605130 coding downstream 231490 37628152 ~ 37664293 (+)
LOC110501519 LOC106605129 coding downstream 302553 37699215 ~ 37763715 (+)
LOC110489035 LOC106605126 coding downstream 466539 37863201 ~ 37890510 (+)
G138522 NA non-coding upstream 6445 37340956 ~ 37341211 (+)
G138501 LOC106605134 non-coding upstream 10582 37336079 ~ 37337074 (+)
G138515 NA non-coding upstream 23760 37323684 ~ 37323896 (+)
G138503 NA non-coding upstream 41977 37305447 ~ 37305679 (+)
G138367 NA non-coding upstream 161258 37186148 ~ 37186398 (+)
G138558 NA non-coding downstream 4145 37400807 ~ 37401048 (+)
G138566 NA non-coding downstream 11307 37407969 ~ 37408189 (+)
G138569 NA non-coding downstream 14243 37410905 ~ 37466211 (+)
G138621 NA non-coding downstream 100746 37497408 ~ 37497640 (+)
G138622 NA non-coding downstream 101956 37498618 ~ 37498959 (+)
LOC110488849 LOC106605147 other upstream 945685 36354883 ~ 36405310 (+)
G137058 LOC106605156 other upstream 1247379 36099611 ~ 36100277 (+)
G136994 NA other upstream 1309915 35982832 ~ 36037741 (+)
LOC100653444 LOC106584591 other upstream 1491256 35855149 ~ 35865269 (+)
LOC110488639 LOC106605005 other upstream 1560186 35785691 ~ 35788114 (+)
G139004 NA other downstream 380399 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 523073 37919735 ~ 37940714 (+)
G139101 NA other downstream 547080 37943742 ~ 37944012 (+)
G139179 NA other downstream 654697 38051359 ~ 38051744 (+)
LOC110489834 eny2 other downstream 4142633 41539240 ~ 41541654 (+)

Expression


Co-expression Network