LOC118939571


Basic Information

Item Value
gene id LOC118939571
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37463985 ~ 37476762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036591.1
GGCCAACTCAACATCATGCTTGCGGAGACTCCTGCACTAGATGGGGTTGGATGCAAAAAACCCAGGATTGTGAATGACTTGTCTGAGTTGGAAGGTTTCCGACGCTTAAAATTGGATTTATGTGGAAATTGCATCAAGGGTCATGTAGGAGGAGTTATTTTGAAACCAAACAAGTTACGAATTTTCCCTTATAAAAAGGAAATTGAGACCCGACAACTCACTGGATCTCACCATAAGAGGTTTGCAATGCACAGgTCCTGGCACAGACAGATGTGTTGTCACGCGTAGGAGTCCAGAACCTTTCTCCAGCTTCTATAAGcagccccactcctctccctccccccacacctcCTCAGAGCATCTTTAATAAGACACATGCTCCGGGGCTCAGGCTCTCATTCACACCAAACGCTCCTTGGCGATCCCCCAACAGGCTGCCTGCTCCACTTCTAGCCCCGCCGAGTCTTCATGGGTTGAACTGACAGGAGTgccacactctcctctcctcccttttccacctctcctctcttctcctctcctctcatactcCACGCATCGCTCCTCCATTACATCATcaaccaacccccccccctcccacacacacacacacgcacaccaccgTTATGGCTTGTGCCCCGGGAATGTTTGGATTTGCAGCCGCAGCAGCATAATCCTCTACTGAAGGGAGTTGCGGACGCAGCAGCccgtagagagagacagtgagagacagagagcgagtgagagagagagagagagagagagagagagagagagagagagagagagag
>XR_005036592.1
GGCCAACTCAACATCATGCTTGCGGAGACTCCTGCACTAGATGGGGTTGGATGCAAAAAACCCAGGATTGTGAATGACTTGTCTGAGTTGGAAGGTTTCCGACGCTTAAAATTGGATTTATGTGGAAATTGCATCAAGGGTCATGTAGGAGGAGTTATTTTGAAACCAAACAAGTTACGAATTTTCCCTTATAAAAAGGAAATTGAGACCCGACAACTCACTGGATCTCACCATAAGAGGTTTGCAATGCACAGcaggTCCTGGCACAGACAGATGTGTTGTCACGCGTAGGAGTCCAGAACCTTTCTCCAGCTTCTATAAGcagccccactcctctccctccccccacacctcCTCAGAGCATCTTTAATAAGACACATGCTCCGGGGCTCAGGCTCTCATTCACACCAAACGCTCCTTGGCGATCCCCCAACAGGCTGCCTGCTCCACTTCTAGCCCCGCCGAGTCTTCATGGGTTGAACTGACAGGAGTgccacactctcctctcctcccttttccacctctcctctcttctcctctcctctcatactcCACGCATCGCTCCTCCATTACATCATcaaccaacccccccccctcccacacacacacacacgcacaccaccgTTATGGCTTGTGCCCCGGGAATGTTTGGATTTGCAGCCGCAGCAGCATAATCCTCTACTGAAGGGAGTTGCGGACGCAGCAGCccgtagagagagacagtgagagacagagagcgagtgagagagagagagagagagagagagagagagagagagagagagagagag
>TU159560
TGTCTGAGTTGGAAGGTTTCCGACGCTTAAAATTGGATTTATGTGGAAATTGCATCAAGGGTCATGTAGGAGGAGTTATTTTGAAACCAAACAAGTTACGAATTTTCCCTTATAAAAAGGAAATTGAGACCCGACAACTCACTGGATCTCACCATAAGAGGTTTGCAATGCACAGgTCCTGGCACAGACAGATGTGTTGTCACGCGTAGGAGTCCAGAACCTTTCTCCAGCTTCTATAAGcagccccactcctctccctccccccacacctcCTCAGAGCATCTTTAATAAGACACATGCTCCGGGGCTCAGGCTCTCATTCACACCAAACGCTCCTTGGCGATCCCCCAACAGGCTGCCTGCTCCACTTCTAGCCCCGCCGAGTCTTCATGGGTTGAACTGACAGGAGTgccacactctcctctcctcccttttccacctctcctctcttctcctctcctctcatactcCACGCATCGCTCCTCCATTACATCATcaaccaacccccccccctcccacacacacacacacgcacaccaccgTTATGGCTTGTGCCCCGGGAATGTTTGGATTTGCAGCCGCAGCAGCATAATCCTCTACTGAAGGGAGTTGCGGACGCAGCAGCccgtagagagagacagtgagagacagagagcgagtgagagagagagagagagagagagagagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036591.1 False 788 mRNA 0.52 3 37463985 37476762
XR_005036592.1 False 791 mRNA 0.52 3 37463985 37476762
TU159560 True 708 lncRNA 0.56 3 37463986 37476683

Neighbor

gene id symbol gene type direction distance location
LOC110501508 LOC106605132 coding downstream 146 37442359 ~ 37463839 (-)
LOC110488968 LOC106605134 coding downstream 126378 37332647 ~ 37337607 (-)
LOC110533765 NA coding downstream 191010 37264176 ~ 37272975 (-)
LOC110488943 LOC106582967 coding downstream 538103 36922102 ~ 36925882 (-)
pnrc2 LOC106605140 coding downstream 614612 36844929 ~ 36849373 (-)
LOC110489008 LOC106604987 coding upstream 300642 37777404 ~ 37782182 (-)
LOC118939581 LOC106604987 coding upstream 314477 37791239 ~ 37796388 (-)
LOC118939584 c3-1 coding upstream 328247 37805009 ~ 37806792 (-)
LOC110489018 LOC106597357 coding upstream 329997 37806759 ~ 37810055 (-)
LOC110489027 c3-1 coding upstream 341352 37818114 ~ 37823518 (-)
G138713 NA non-coding downstream 51900 37411227 ~ 37412085 (-)
G138661 NA non-coding downstream 131687 37332047 ~ 37332298 (-)
G138659 NA non-coding downstream 132417 37331037 ~ 37331568 (-)
G138651 NA non-coding downstream 148666 37315067 ~ 37315319 (-)
G138646 NA non-coding downstream 157197 37306567 ~ 37306788 (-)
G138780 NA non-coding upstream 20650 37497412 ~ 37497701 (-)
G138783 NA non-coding upstream 24155 37500917 ~ 37501223 (-)
G138940 LOC106583027 non-coding upstream 157615 37634377 ~ 37635070 (-)
G138964 NA non-coding upstream 188308 37665070 ~ 37665337 (-)
G138968 NA non-coding upstream 190876 37667638 ~ 37667898 (-)
G138080 NA other downstream 635588 36825792 ~ 36828397 (-)
G137839 LOC106605146 other downstream 824980 36634193 ~ 36639005 (-)
G137479 NA other downstream 1093657 36370004 ~ 36370328 (-)
G139231 NA other upstream 270679 37747441 ~ 37752958 (-)
LOC110489105 LOC106605178 other upstream 569940 38046700 ~ 38048666 (-)
G140479 NA other upstream 1351147 38827909 ~ 38828195 (-)
G140879 NA other upstream 1587100 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 2287171 39763933 ~ 39765473 (-)

Expression


Co-expression Network