LOC110488991 (LOC106605131)


Basic Information

Item Value
gene id LOC110488991
gene name LOC106605131
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37607093 ~ 37621875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561519.2
CGGAAGTGGAAACGCGTTTCCTTGCTCACAATAGGAAAACTTTCTCAGCGTTTGCAGTGGAGTTTGTTGTTCACGTTTTATACATATGTATTCGTTGTGCCCTTTATTTAGTCGATTAACAACGATTGGTTGAGTTTCATAATGGATAAAGAGAGACGACATAAAAGAGTGAAATCCCCTGTGCGGAACTCAAAACCGAAAATCAAACAAGAGAAACTGAGCCCTGCTAGGCCCCAGAGATCACGCCACTCGAGTTCGGGGTCCAACGGCAGCCCAAGCCCACCGCTACAGAGGAGACGAACGAGCAGATCGCCACCCAGGACAAAAGGTCATTCGCCAGGTAGAAGGGCGTTGGGAAGACGAGACAGATCGCCCAAAAACACCGGCAGGAGCCGAAGCCCTCCCCGCAGTGCCGATGTCAAAATAAAGCGGGAGCAGGATGACCACCGCGGTGCCGATGACCGTAGAAGGCGTGACCGCAATGACAAACCAGAGCCCTCGGAGCCACCAGTGCGGCGAAGTAGGTGGAAGCAGGCTGACGGACCCAGAGAATCTGACAGACCCAGGGAGAGAAAACGAGTTGAGAGAGAGCGGGGTGGAGGTGGGGACAGGCCCAGAGAGCGCGAATCCCGCTCCTtccaggagcagcaggctgagaGACAGCAGCATGACAATCAACGACGGGACAACCGGCACCGGTTTGAGGAGAACAACGGCGAGGGGCAAGCTTTCGGACAAGGTACCCAAGAGGGGGGCGAGGGCAAAGACAGCCCCCCAGTTGATAAAGAGAAGCCCAACTTTGAACTGTCTGGTGCGCTCACGGAAGATACCAACACGTTCAGGGGGGAAGTGATCAAGTACAACGAGCCCCCCGAGGCTCGCATCCCTAAGCGCAGATGGCGACTGTACCCCTTCAAGAACGATGAGCAGCTCCCGGTCATGTACGTCCACAGGCAGAGTGCCTACCTGATGGGGCGGCAGAGGAAGATTGCTGATATCCCCATCGACCACCCCTCCTGCTCCAAACAGCACGCAGTGTTCCAGTACAGGCTGGTGGAGTTCACGCGTTCGGATGGAACTGGCGGGCGGCGGGTGAAGCCCTACATCATTGACCTAGGTTCGGGCAATGGCACCTACCTGAACAACCAGCGCATCGAGGCGCAGCGCTACTACGAGCTCAAGGAGAAGGACGTGCTCAAGTTTGGCTTCAGTAGCCGCGAGTACGTCCTGCTGCATGAGTTCTCCGACACGGCCGAGGTGGACGCCAGGGCGGAGGAAGACGACGAGGGCCTGGACGAGGGCCTGGATGAGGAAATGCAAGACCTCTGAGTCTTTTCGAATAGTTGACTTGCGTTTTTCCGTCCTACTTTCCTTTGAAGTAATCACAGATCTTAATTGGTTGGATTGTTGAAAGTAATAGGATTTTGCTTAGTTAAACCTATTCAGTCACTTATAAATATGTGCTTACCTCAGGGAAACAAGGAAGGGGAAATGCACATTATTTCAAGTATTCTGACAGTGGCACAGATTATCCCATCAAGTGTATTGTGGGAAAATAATGTTCTCACCGATGCCTGCCACCTGTTGACCATCATCTCTTTAAAAACATGAATGGAACAATGACCTGACATGATGGCGTGTTGGGTTAAGCATCTTTCCGGGTTAACAGAACAAATAAAAAAAGGGGTAGGAGAAGTCGGTGTGGTCTCTATTTGGCGGTCATAGAAACCTGCTTTAACCTGCAGTAACCGGGTCTCAGTACTCTCTATTCTCAGGACATTAGTATAAGATCAGTAGTGTggttgatcccccccccccccccccccatatctgACTGCATACGTTCAACACAAGTGCTCAAATGCCAGAAAGAAGTTCCTtgacaaaataaatattttgttatTATATTTTTGGAATACAACATTGAATACAAAGTAAGGCTAGCCTTCAGCAATAGACCATATCCAGACCTTAAATGTAAATACACTGGATGTATTGAATGTGAATGCTGGATTCATCATATGGTGTACTGTATTTGGGTTTGAGCATTGCAAGTTGCAAAGAAAGCATAGGCGTATATGTATCTGCTTTAAATGTGTGTTTCTTGTGATGTAGGAAAAACGTGTGTATCGCAGTGTATTCTCGTTTGTCCGGTCTTTACCACCGAATTGACTAGGCTATGGAGGTTTCTGGAGAAAAATCATACCACACTGTAAAGCATGACTATTCCTACTACAAAGacaattttgtttttttactttttCAGACACCATCTACATTGTAGTTCCATTTTAGATGTTTTGTATTGTACATAAAGGTTGTGAAAGacttagttttgttgatgtttgTTCGTAGTTCAGGTTTAAATCTGCCATTCCTTTGGTTTAC

Function

NR:

description
smad nuclear-interacting protein 1-like

GO: NA

KEGG:

id description
K13108 SNIP1; smad nuclear-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561519.2 True 2388 mRNA 0.49 4 37607093 37621875

Neighbor

gene id symbol gene type direction distance location
gnl2 nog2 coding upstream 3799 37572404 ~ 37603294 (+)
LOC110488976 LOC106605133 coding upstream 210431 37347656 ~ 37396662 (+)
LOC110488961 LOC106605135 coding upstream 329068 37274322 ~ 37278025 (+)
LOC110488952 LOC106605136 coding upstream 660999 36927068 ~ 36946094 (+)
LOC110488936 LOC106605137 coding upstream 684835 36919644 ~ 36922258 (+)
LOC110489000 LOC106605130 coding downstream 6277 37628152 ~ 37664293 (+)
LOC110501519 LOC106605129 coding downstream 77340 37699215 ~ 37763715 (+)
LOC110489035 LOC106605126 coding downstream 241326 37863201 ~ 37890510 (+)
sh3d21 LOC106605124 coding downstream 270076 37891951 ~ 37911330 (+)
LOC110489135 LOC106605117 coding downstream 1096417 38718292 ~ 38734398 (+)
G138805 NA non-coding upstream 16536 37535056 ~ 37590557 (+)
G138640 NA non-coding upstream 74980 37531419 ~ 37532113 (+)
G138631 NA non-coding upstream 88239 37518494 ~ 37518854 (+)
G138630 NA non-coding upstream 94348 37512539 ~ 37512745 (+)
G138622 NA non-coding upstream 108134 37498618 ~ 37498959 (+)
G138991 NA non-coding downstream 71107 37692982 ~ 37693181 (+)
G139038 LOC106586992 non-coding downstream 151115 37772990 ~ 37773504 (+)
G139040 NA non-coding downstream 154716 37776591 ~ 37776949 (+)
G139102 NA non-coding downstream 323027 37944902 ~ 37945164 (+)
G139103 NA non-coding downstream 323469 37945344 ~ 37945605 (+)
LOC110488849 LOC106605147 other upstream 1205122 36354883 ~ 36405310 (+)
G137058 LOC106605156 other upstream 1506816 36099611 ~ 36100277 (+)
G136994 NA other upstream 1569352 35982832 ~ 36037741 (+)
LOC100653444 LOC106584591 other upstream 1750693 35855149 ~ 35865269 (+)
LOC110488639 LOC106605005 other upstream 1819623 35785691 ~ 35788114 (+)
G139004 NA other downstream 155186 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 297860 37919735 ~ 37940714 (+)
G139101 NA other downstream 321867 37943742 ~ 37944012 (+)
G139179 NA other downstream 429484 38051359 ~ 38051744 (+)
LOC110489834 eny2 other downstream 3917420 41539240 ~ 41541654 (+)

Expression


Co-expression Network