LOC110489000 (LOC106605130)


Basic Information

Item Value
gene id LOC110489000
gene name LOC106605130
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37628152 ~ 37664293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561532.2
GGGTTAAAGACGTGTAGAGATTATGGAACAGTTCGCGGAATGTCACTGGAAACGGGGGCGAGACGAAACGCACCTGGGGAATTTGCAAGAACAGAGCTGCACTGTCTATGAAGGGTATTCAACACTGGAATATGCGTTCTTGAATATTTGGAGAAATGTATACCACCGAACGCAGGCGTATGAGTCTGCACGAGGTTAAGAGAAAGGATCCTGTTTGGGTATCAGCTGGAAGTTTATGGCAGGACCCTTTGGCTATTGAACTCAGCACCTCGAATAAACACATTATTTCCCCCCGGAGCCGGACTAGGGCTGTTGCTGTTGCATACATTGTCACTGAGGATGCATCCCTGCCACAGACAGAAGAGAACTTGTCACTGAAGTCCGTGAAAGAAGCCTGCGCGGAAACGCACGCGGTGTTCAAAACCATTCCTTTCGAGCGAATATCGCTTGGGACGACTGACATTCTTGATATATTCTACAATGCAGATGTGGCAGTGGTGGAAATGAGTGATACTTACTGCCAGCAGTCCCTCTTCTATCACCTGGGTGTAAGAGAGAGCTTCAGCATGACCAATAACATCATCCTGTATTGTCACAAGCAGGACAGTGACCTGGAAGCACTCAAGGAGCAGTGTGGGAGCTACACGTTCATCCCGTATGTAGTGTTGCCACAGGGCAAGGTGTTTGCCTGCGACGCGACCCTCTTAAACGGCATCAAAGAACTGATGCAGCCAAGCTTCCGACTGGAACCCCTCCTCACCCCACTGGTAGAGAGGCTCATTCAACTGCTGGATAATGTGCACGTTCATGCCAGTGAGTACTTCCGGGAGTCCATCCGGCATGAGATCCGCACGGCCCGGGAGCGCTTCAGTGGCCAGGACTTGAGTCAGGAGCTGGGTCGCATCCAGAAGCGACTTGACACGGTGGAGCTGCTCAGCCCAGACATCATCATGAACCTACTGCTGTCCTACCGGGATGTCCAGGACTACGATGCCATTATCAAACTGGTAGAGACTCTGAACAACTTGCCCATGTGCTTGGTGGCTGCCCAGCAGAATATCAAATTTCACTACATATTTGCTTTAAACAGGAGGAATCGTCCAGGTGACCGTGCCAAGGCCCTGGAGGTGATTCTGCCCATTGTGGAGTCAGGTGACCGGGTGGTGTCGGACGTGCACTGCCTCTGCGGCCGTATCTACAAAGACATGTTCATGAGCTCTGGCTTTAAAGACCATCGCAGTCGAGACCAGGCCTGCTACTGGTACGGCAAAGCCTTCGAGACAGAGCCAACCCTTCATTCCGGCATCAACAACGTTGTCCTCTTGATGGCTGCCGGCCACGAATTTGACACCTCCATCGAGCTGCGGAAAATAGgcGTGACCCTGAGCAGCCTCCTGGGGAGGAAGGGCAGCTTGGAGAAGATGCAGGACTACTGGGACGTAGGCTTCTACCTGGGAGCCAGCATCCTGGCTAACGAACACAGGAAGGTCATCGAGGCTTCAGAAAAACTCTACCGGCTCAATGCACCCATGTGGTATGTGGGCTCGATCATGGAGACGTTCATCTTGTATCGTCAGTTCACCAAGCCCCCAGAGGTGAAAATGTCTAAACAGGAGACTGTGGACTTCTGGATGGAGCTGATGCTGCAAGCCTGCAAGCCTACTGTTTCCACTGACCGCTGCCCAGTTCTGATCCTGGAGCCGACCAAAGTGCTCCAACCCAccatagtgtgtgtgagtgaggaggACGACAGCTGCACAGTTCAGCTCAACCACATCACACCCCTGAAGAAAGGCCAGAAAGCCCAGTGGACTTTCCCTGCCTCGCAAATCCGGGGAGTGAGTGTTTCCAAGTTTGACGAGCGTAGCTGCTTCCTGTATGTCCTGGAGAACTCGGATGACTTCCAACTCTGCTTTCCCAGCGAACTGCACTGTAAAGGGTTCTGTGAGCTGGTCAACTCTCTCCTAAGCCAGGCAGAAGCCCCAGTGGAGTACCCCAGCGAGCTCACTGGAGGATTACTGGAGTTTATCTATGAGACCAGCGAAAACGGAGACAAGGTGGTTCTGGGTAAAGGAACCTATGGCGTGGTGTATGCTGGGAGGGACCTGAGCAACCAAGTCCGCATCGCCATCAAGGAGATCCCAGAGAAAGACAGAACTTACTCCCAGCCTCTGCATGAGGAGATAGCTCTGCACAAGAGGCTGAAGCACAGGAACATCGTTCAGTACCTGGGCTCTATGAGTCAGGACGGCTTCATCAAGATCTTTATGGAGGAGGTTCCTGGAGGAAGCTTGTCCTCTCTCCTGCGTTCCAAATGGGGACCCCTGAAAGACAACGAGGCCACCGTCATTTTCTACACCAAACAGATCCTTGAAGGGCTTAAGTACCTCCATGACCACCAGATAGTCCACAGAGACATCAAGGGTGACAACGTGTTGATTAACACCTACAGTGGTGTTCTCAAGATCTCTGACTTTGGCACCTCAAAACGACTGGCGGGAATCAACCCCTGCACAGAGACctttacagGGACCCTGCAGTACATGGCTCCAGAGATCATCGACCAGGGCCCGCGGGGTTATGGGAAGCCTGCAGACATCTGGTCCTTGGGCTGTACCATCATAGAGATGGCCACGGGGAAACCACCCTTCCACGAGCTGGGCAGCCCACAGGCAGCCATGTTCAAGGTTGGTATGTTCAAGATCCATCCGGAGGTGCCGGAGTGTATGTCAGCTGAGGCCAAAGGCTGCATCATGAGCTGCTTCACACCGGACCCAGACAACAGGGCCACGGCCTCTGAGCTGCTCAAGGATTCCTTCCTCAAATCCACATCCCGGAGGAAGGCCAAGCCAGAGCCTGAAACACTGCCTACAGATGCTGGTGACATCTACCAGCGGAGTATGTCTGTCCCAGTGTCTATACGTGTGACAGATGCAGACAGGGACACTGACAGGATGGACCTGTCGTGCTCATGGGACCTCCGGAGGACCATCTCCCCCCTCAGAGGAAAGGACATTACAAAGAGCCCACCCAGCACCAGAGGCTTCCTGCTGGTGTCAGAGGAGCCCAGTACTGTGGACATGATGGCTAGTCCAGCCACGTCAGGGGAGAACCTGGGCCTGTTCCTACTGAGGAAGGACAGCGAGAGGAGGGCCACACTGCACAGGATCCTCACTGAGTACATCACCGATGTGGTGCACAACATCCAGAACACACTACCtcagCAAACAGACGTTGGGTCCGTGACCTCAGAGCACATCTCTGAGCTGATTGGCTGCCTGCGGGAGAACATCCGCTCTCCAGACAGAAGGCAGCTGACCAACAGCCTGCTGAAGTTGCGCTCCACACTGCTTGCTACTGCAGTACCCCTCAAAAACCTGCGAGCTGTGCTCTTCAGCCTCCAGGATGCGgtgAAAAAGGTATTGAGGCAGCAGCGGGTGAAACCTCACTGGATGTTTGCTCTGGATAACCTTCTGAGGCAGGCCGTACAGGACGCCATCACTGTGCTGTTACCAGAGCTCAAGCTTCAGCTGCAGTCTTCCTTTGAGACGGAGGAGAGTAGCCCAGAAAGAGAGCAGCAGCCCAGTGAGCTAGCAGAGCTTTTGCCTGCAGTCCTCTCAGATGACCAGGTGGCGGCGCCAGCCGACACAGAGCCCATAGAGGAGGTTTCAGAAAGCCCCTGCTTACCCAATGGCCTCCAGTACAACACTAACTGTCCCCTCAGTCAGGAACTGAGAGATCTACGGCTAGAGACGCGCAGACTGCTGACCCAgctgagtgagaaagagagagaataccaGGAGCTACTGAGGAACTCTGTCCAGAGTAGACAGGGTCAGATCGACACTACCAGGAACACATCAGAACCCACAGATACAGAGTTGTCCCTGCAGATTAGTTCGAACTCAGAAGTCAAGTCCTTGGTTTGCTGGCTGAAGGCTATCCCAGTAGATCAGGACACCATAGACAAGTTACTCTCTCACGAGTTCACCTTGGACTGTCTCCTCACTATGGCCTGCAGGGATGACTTGATGTACTGTGCCATAAGAGGAGGGATGCTCTGTCGTATCTGGGCGGCCATCACAACATGGAGGAAGTCACAGCTCAAATCTCAGCTCAGCACACACTCTGAAGAGAGCGAGGACACATTCTCGGATGGGTAGTCACATGTTCCACGAATAGGCTGGTCCTATAAGCACAACATGGTACAGATTTACTGAGTGAATTTATCTCAtaattaaggtgtgtgtgtgtgtgtgtgtgtgtgtacgcatgtgCAGTTTTCTGAGAACAAGATAATCATGTCATAAAAAGTGGACCTACCTTAGTATTTCCCCAAAGATGTTATATTGAAACTGAAATGGTTACAGAAAGATGGATGAACAGTAAAGGATATGTGTTTCTGTCATTTCTTATTGTGAATACCTATACTTATAAAAACGGGTTTGAGAAATCTGCAATCTGATTGGTTGAAATGGCGTTCTAAACCATTGACAATTCTCTGATATTTGAAATGCATATGCAGGGGAAAGGGGAATATTTGGGGCCAACAGCTGTCATATTTTTACCTCAACAGACACTCCATGCCTGCATGGATACTTTATATTCCTTTGTTAGTTTGGTGTGTAGTATAAAACAAAATAACTTATTTCTATTGTACCTCTTTAATGTACACCCTTTCTGAGATCTTAGAAGGGCCTAAAGCTTGAAGAAAAGGTATGTTATTGATGGTAAATATACACTTTTGCGAGTCTGCACTGGTGACTTGACTGGTCATTAAAATAAGTGGGAATAGTG

Function

NR:

description
mitogen-activated protein kinase kinase kinase 5-like

GO: NA

KEGG:

id description
K04426 MAP3K5, ASK1; mitogen-activated protein kinase kinase kinase 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561532.2 True 4797 mRNA 0.51 28 37628152 37664293

Neighbor

gene id symbol gene type direction distance location
LOC110488991 LOC106605131 coding upstream 6277 37607093 ~ 37621875 (+)
gnl2 nog2 coding upstream 24858 37572404 ~ 37603294 (+)
LOC110488976 LOC106605133 coding upstream 231490 37347656 ~ 37396662 (+)
LOC110488961 LOC106605135 coding upstream 350127 37274322 ~ 37278025 (+)
LOC110488952 LOC106605136 coding upstream 682058 36927068 ~ 36946094 (+)
LOC110501519 LOC106605129 coding downstream 34922 37699215 ~ 37763715 (+)
LOC110489035 LOC106605126 coding downstream 198908 37863201 ~ 37890510 (+)
sh3d21 LOC106605124 coding downstream 227658 37891951 ~ 37911330 (+)
LOC110489135 LOC106605117 coding downstream 1053999 38718292 ~ 38734398 (+)
LOC110489149 LOC106605176 coding downstream 1092940 38757233 ~ 38786447 (+)
G138805 NA non-coding upstream 37595 37535056 ~ 37590557 (+)
G138640 NA non-coding upstream 96039 37531419 ~ 37532113 (+)
G138631 NA non-coding upstream 109298 37518494 ~ 37518854 (+)
G138630 NA non-coding upstream 115407 37512539 ~ 37512745 (+)
G138622 NA non-coding upstream 129193 37498618 ~ 37498959 (+)
G138991 NA non-coding downstream 28689 37692982 ~ 37693181 (+)
G139038 LOC106586992 non-coding downstream 108697 37772990 ~ 37773504 (+)
G139040 NA non-coding downstream 112298 37776591 ~ 37776949 (+)
G139102 NA non-coding downstream 280609 37944902 ~ 37945164 (+)
G139103 NA non-coding downstream 281051 37945344 ~ 37945605 (+)
LOC110488849 LOC106605147 other upstream 1226181 36354883 ~ 36405310 (+)
G137058 LOC106605156 other upstream 1527875 36099611 ~ 36100277 (+)
G136994 NA other upstream 1590411 35982832 ~ 36037741 (+)
LOC100653444 LOC106584591 other upstream 1771752 35855149 ~ 35865269 (+)
LOC110488639 LOC106605005 other upstream 1840682 35785691 ~ 35788114 (+)
G139004 NA other downstream 112768 37777061 ~ 37824010 (+)
G139089 LOC106605123 other downstream 255442 37919735 ~ 37940714 (+)
G139101 NA other downstream 279449 37943742 ~ 37944012 (+)
G139179 NA other downstream 387066 38051359 ~ 38051744 (+)
LOC110489834 eny2 other downstream 3875002 41539240 ~ 41541654 (+)

Expression


Co-expression Network