LOC110489008 (LOC106604987)


Basic Information

Item Value
gene id LOC110489008
gene name LOC106604987
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37777404 ~ 37782182 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561545.2
GTTGGAGAGGGAAGGCACCATTACAGACCCAGAATCAGCAGGGGAGATGTGGGTCGGCAACTTGCTGTATCTGGCCGCTCTGGCTGTAGCCCTCTCCTTACCTACCTTATCTGATGGAGCTGCACTACTAGTGTTGTCagctcctaacctgctgcgtgtGGGCAGTAATGAGAACATCTTTGTGGAGTCTCAGGACCATGCAGGAGGTCCCCTGAATGTTAAGATCATGGTGAAGAACCACCCTACGCAGAGCAAAGAGCTAGCCTCTAAATCAGTGGTTCTGGATCAAGCAAACAACTTCCAGGCTATGACACAACTGGTCATTCCAGAGGGGGACCACTTTGTGGATGACCCCAAGCAGAAGCAGTATGTGGTCCTGCAGGCCCAGTTCCCTGACCGCCTCCTGGAGAAGGTTGTTCTGGTCTCCTTCCAGTCTGGATACATCTTCGTCCAGACTGACAAGTCCATTTACACTCCGGCAAGCACCGTCTACTATAGAGTGTTCTCTATGACTCCTGGCCTGGAGCCTCTGACCAGGGAGATATTTGAGGACCAGGAGGTCGCCAAGAACAAAGAGATCGCAGTCTCTGTGGAGATCATGACTCCTGAGAACATCACCATCTTCAGGGATATCGTCAACCCAGACAAGGGAGTCAAATCTGGACGGTTCAAACTCCCTGACATCGTCAGTTTCGGGACATGGCATGTAGTCACAAGGTTCCAGAGCACTCCTCAAAATACCTTCTCATCTGACTTTGAGGTCAAGGATTATGTTCTGCCCAGCTTCGAGGTTAGTCTGACCCCAGCTAAAGCCTTCTTCTACGTCGATGACAATGACCTGACTGTTGACATCACTGCCAGGTATCTACACGGTAAGGAAGTGACAGGGACAGGCTATGTGGTGTTTGGTTTCATCACAACAGAGAGCGAGAAAAATATCTTCCCTGCCTCTCTGCAGAGAGTAGGGATCAAAGAAGGTAAAGGAGTGGCTTGTCTGAAGAAGGAACACATCACACAGACTTTCCCCAACATCCATGATCTGGTCAAACAGTCCATCTTTGTATCAGTCAGCGTGTTAACAGAGGGTGGGGGTGAAATGGTAgaggcagagaagagagggatccaTATTGTCACTTCGTCATACACCATCCTCTTCAAGAGGACGCCCAAATACTTCAAACCTGGCATGCCCTTTGACGTCTCTGTTTACATTACGAATCCTGACAACTCTCCAGCAAGTGGAGTGGCGATTGAGGTGACTCCAGATAATGCTAAAGGGGTGACCAGGGCCAACGGTTTTGCAAAAATATCACTTAACCCTGTGGCATCAGCCAGAGAGCTGGCAATCACTGTGAAGACCAAGGACCCGGCGATCCAACACAACAGACAGGCGGAGGCCACCATGAAGGCTCTCCCCTACAGAACTTCCACTGGGAACTTTCTCCATGTTGGGGTTTGTTCTAATGAGTTGAAGATTGGAGACCCCATTAAGATCAATCTGAACCTGGGATCCACCCCCATACAAATCCATGACATTACATACATGTTCCTGAGCAGAGGTCAGCTGGTGAAAGTGGGCCGATTTAAAAGACAGGGCAACgcgctggtgacactgtcagtgccTGTCTCCAAGGAGCTGCTTCCGTCGTTCCGCATCGTAGCGTACTACCATGTGGGAGCAGCTGACCTGGTGGCAGACTCTGTCTGGGTTGACATCAAGGTCTCCTGCATCGGCTCACTGAAAGTCACATCGACCAGGCCCAAGGCATCCTATGAGCCTCATAAGGCTTTCAGTCTAACCATCACTGGAGACCCGGGAGCTAAAGTAGGACTGGTGGCTGTAGACAAGGGAGTCTACGTTCTCAACAGCAAACACCGTCTCACACAGACCAAGATCTGGGACACCATAGAGAAGCATGATACAGGCTGTACAGCTGGAGGGGGAGCAGACAATATGGGGGTGTTCTACGATGCTGGTCTGGTATTTGAGACCAACACTGCTAAAGGGACTGGGATCAGAACAGACCCCAGCTGTCCTGTTAGTTCTAGGCGGAGACGAGCAGTGACCATCAGTGACATCATCACTAGTATGGCCAGTAAGTACAATGGTCTGGCCAAGGAGTGTTGTGTGGACGGGATGAGGGACAACACCATGGGATATACCTGTGACAGacgggcccagtacatcacagatAAAGACGTCTGCGTCCAAGCCTTCCTTGTCTGTTGCACTGAGATGGCCTCCAAGAAGATAGAATCCAAACAGGATGCACTGCTGCTCTCACGCagtgaggaggatgatgatgatgcgTACATGCGGTCTGAAGACATTGTGTCTCGTTGTCAGATCCCTCAGAGCTGGATGTGGGAGGAGATCAATCTTCCTGAATGCCCTGCCCAAGACAAGAACTGCGAGTCCACATCTGTAATAAGGAACATCTTCCGAAAGGATTCCATCACCACCTGGCAAATAACAGCCATTAGCCTGTCTAAAACTCATGGTATCTGTGTGGCAGATTCGTTTGAGATGATAGTTCTAAAGAAGTTCTTCATCGACCTCAAGCTACCCTACTCAGCCGTCCGCAATGAACAGCTGGAGGTCAAAGCAATCCTCCACAACAACAGCGAAGACcccatcactgtgtgtgtggagCTGATGGAGAATGACGAGGTGTGCAGCTCGGCAAGCAAGAAGGGTAAGTACAGGCAGGAAGTGAACATGGACGCCATGTCCACCCGGGTTGTCCCCTATGTCATCATCCCTATGAAACTGGGCATGTACTCCATTGAGGTCAAGGCATCTGTGAAAAACTCTGACAGCAATGACGAGGTGAAGAGGGATCTGCGTGTTGTGGCTGAGGGAGTACTGGTCAAGAAGGAAACCAACGTACTCCTGAACCCGGCTAAACATGGTGGTGAGCAGACGTCACACATACCCAGTGAAGTTCCCCGGAACCAGGTGCCAAACTCTGATGCTTACACACTGATCAGTCTGACTGGTGGAGAGCAGACCAGTGTGCTGGTGGAGCAGGCCATCAGTGGAGACTCTCTGGGCAGTCTGATAGTTCAGCCAGTCGGATCTGGGGAACAGAACATGATCTACATGACCCTGCCTGTCATTGCTACACACTACCTAGACAACACCAAAAAGTGGGAGGATATTGGCCTGGACAGACGGAACACAGCCATCAAGTATATCAACATTGGTTACCAACGTGAGCTGGCCTACCGTAAAGAAGATGGCTCCTACGCTGCCTGGGTCAGCAGACAGAGCAGCACCTGGCTGACAGCATACGTGGTGAAGGTGTTTGCCATGTCCAGTACATTAATCAGTGTTCAGGAAAATGTGCTCTGTACTGCTGTCAAGTGGCTGATCCTGAGCACACAACAGCCAGATGGCATCTTCAATGAGTTTGCTCCTGTCGTTCACGCAGAGATAATGAGTAACATGATGGGATCGGACAATGACGCCTCCATGACAGCTTTTGTTCTCATCGCCATGCAGGAAGCACACTCACTGTGTGAGCAGTATGTCAACAGCCTACAAGACAGTATGGCTAAAGCAGTAGCGTACCTCGAGAAGCGTCTGCCCCACCTGACGAACCCATATGCTGTAGCTATGACCTCCTATGCTCTGGCCAATGCAGGGAAACTAAACAAGGAGACCCTATTGAAGTTCGCCTCTCCACAGCTGGACCACTGGCCAGTCCCTGGTGTTCACCAGTACACGCTGGAGGCCACGTCGTACGCCCTGCTTGCCCTGGTCAAGGTGAAGGCCTTCGAAGAGGCCGGCCCCATAGTCAGGTGGCTCAACAAGCAGAAGAAGGTGGGAGGGGGATACGGATCCACACAGTCCACCATCATGGTGTTCCAGGCTGTGGCTGAGTATTGGAGCCACGTGAAGGACCTGAAAGACTTTCACTTGAACATCAACCTAGAGGTGGCCGGCAGGGCATCAGTCACCAAGTGGTCCATCAACAACAAGAACCAGTTCCACACTCGTACAGACAAGGTCAACTCCATAGACAAGGACTTGACTGTAAAAGCCTCAGGAAATGGTGAGGCGACCTTGTCGGTGGTGACACTGTACTATGCCCTGCCAGAGGAAAAGGACAGTGACTGTGAAAGCTTTGACCTCTCTGTCACCCTCACTAAGATGGACAAAACAAGTCACGAGGACGCCAAGGAGTCATTTATGCTCAATATTGAGGTGTTGTACCGTAACTCAGAGAGAGATGCGACCATGTCTATTCTGGACATCAGCTTGCTGACCGGCTTCATTGTGGACACAGACGATCTGAATCAGTTGTCCAAGGGGAGGGAGCGCTACATAGAGAAGTTTGAGATGTCCAAAGTTCTGTCTGAAAGAGGATCTCTCATCCTATATCTGAACAAGGTGTCTCATAAGTTAGAAGAGAAAATATCCTTTAAGATCCACAGAGTACAGGAAGTGGGAGTTCTTCAGCCAGCTGCCGTCTCTGTATATGAATACTACAACCAGAAGAACTGTGTGAAGTTCTACCACCCACAGAGGGAAGGCGGTACTCTGAGCAGACTGTCTCTTGGAGATGTGTGCACGTGTGCGGAAGAAAGCTGCAGTATGCAGAAGAAAGATGAGCCAGATGTCAACCGCAGCACTACGGTGGTGTCCTAGGAGAACAGACATGGAAAGAGTACTGGCCCTCACAACAAGAGTGCACATCCAGAAACTACAGAGAAGTCTGTCTGGGCATTGATGAGTTCATCAACCAGATCACAACCTTCGGCTGCCCAGTTTAG

Function

NR:

description
complement C3-like

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0006957 complement activation, alternative pathway biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561545.2 True 4779 mRNA 0.51 1 37777404 37782182

Neighbor

gene id symbol gene type direction distance location
LOC118939571 NA coding downstream 300642 37463985 ~ 37476762 (-)
LOC110501508 LOC106605132 coding downstream 313565 37442359 ~ 37463839 (-)
LOC110488968 LOC106605134 coding downstream 439797 37332647 ~ 37337607 (-)
LOC110533765 NA coding downstream 504429 37264176 ~ 37272975 (-)
LOC110488943 LOC106582967 coding downstream 851522 36922102 ~ 36925882 (-)
LOC118939581 LOC106604987 coding upstream 9057 37791239 ~ 37796388 (-)
LOC118939584 c3-1 coding upstream 22827 37805009 ~ 37806792 (-)
LOC110489018 LOC106597357 coding upstream 24577 37806759 ~ 37810055 (-)
LOC110489027 c3-1 coding upstream 35932 37818114 ~ 37823518 (-)
LOC110489074 LOC106605123 coding upstream 138507 37920689 ~ 38000324 (-)
G139256 NA non-coding downstream 3220 37773682 ~ 37774184 (-)
G139243 NA non-coding downstream 13691 37762548 ~ 37763713 (-)
G139000 LOC105030512 non-coding downstream 80051 37697059 ~ 37697353 (-)
G138979 NA non-coding downstream 95033 37682067 ~ 37682371 (-)
G138978 NA non-coding downstream 95722 37681368 ~ 37681682 (-)
G139310 NA non-coding upstream 120412 37902594 ~ 37906515 (-)
G139309 LOC106605124 non-coding upstream 124768 37906950 ~ 37911825 (-)
G139333 NA non-coding upstream 165577 37947759 ~ 37948117 (-)
LOC110489088 LOC106583156 non-coding upstream 220879 38003059 ~ 38029406 (-)
G139231 NA other downstream 24446 37747441 ~ 37752958 (-)
pnrc2 LOC106605140 other downstream 928059 36844929 ~ 36849373 (-)
G138080 NA other downstream 949007 36825792 ~ 36828397 (-)
G137839 LOC106605146 other downstream 1138399 36634193 ~ 36639005 (-)
LOC110489105 LOC106605178 other upstream 264520 38046700 ~ 38048666 (-)
G140479 NA other upstream 1045727 38827909 ~ 38828195 (-)
G140879 NA other upstream 1281680 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 1981751 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 2442440 40224622 ~ 40298333 (-)

Expression


Co-expression Network