LOC118939584 (c3-1)


Basic Information

Item Value
gene id LOC118939584
gene name c3-1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37805009 ~ 37806792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947707.1
GAAAACGTGCTCTGTACTGCTGTCAAGTGGCTGATCCTGAACACACAACAGCCAGGTGGCATCTTCAATGAGTTTGCTCCTGTCATTCAAGCAGAGATGACGGGTAACGTGAGGGGATCAGACAATGACGCCTCCATGACAGCTTTTGTTCTCATCGCCATGCAGGAAGCAAGCTCAATGTGTGAGCGGTCTGTCAACAGCCTACCAGGCAGTATGGCTAAGGCAGTAGCGTACCTCGAGAAGCGTCTGCCCCACCTGACTAACCCTTATGCTGTAGCTATGATCTCCTATGCTCTGGCCAATGCTGCAAAACTCAACAAGGAGACCCTTCTGAAGTTCGCCTCTCCACAACTGGACCACTGGCCGGTCCCTGGTGGTCACCAGTACACGCTGGAGGCCACGTCGTACGCCCTGCTTGCCCTGGTCAAGGTGAAGGCCTTCGAAGAGGCCGGCCCCATAGTCAGGTGGCTCAACAAGCAGAAGAAGGTGGGAGGGGGATACGGATCCACACAGTCCACCATCATGGTGTTCCAGGCTGTGGCTGAGTATTGGAGCCACGTGAAGGACCTGAAAGACTTTGACTTGAACATCAACCTAGAGGTGGCCGGCAGGGCATCAGTCACCAAGTGGTTCATCAACAACAAGAACCAGTTCCTCACTCGTACAGACAAGGTCAACTCCATAGACAAGGACTTGACTGTAAAAGCCTCAGGAAGTGGTGAGGCGACCTTGTCGGTGGTGACACTGTACTATGCCCTGCCAGAGGAAAAGGACAGTGACTGTGAAAGCTTTGACCTCTCTGTCACCCTCACAAAGATGGACAAAACAAGCCACGAGGACGCCAAGGAGTCATTTATGCTCACTATTGATATGTTGTATCGTAATTCAGAGAGAGATGCAACCATGTCTATTCTGGACATCGGCTTGCTGACCGGCTTCATTGTGGACACAGACGATCTGAAAATGTTGTCCATGGGGAGGGAGCGCTACATAGAGAAGTTTGAGATGAACAAAGTCCTGTCTGAAAAAGGATCTCTCATCCTTTATCTGGACAAGGTGTCTCATAAGTTACAAGACAGAATATCCTTTAAGATCCACAGAGTGCAGGAAGTGGGAGTTCTACAGCCAGCTGCCGTCTCTGTATATGAATACTACAACAAGAAGAACTGTGTGAAGTTCTACCACCCACAGAGGGAGGGTGGTACTCTGAGCAGACTGTCTCTTGGAGATGTGTGCACGTGTGCGGAAGAGAGCTGCAGTATGCAGAAGAAAGATGAGCCAGATGTCAACCGCAGCACTGCAGTGGTGTCCTAGGAGAACAGACATGGATAGAGTACTGGCCCTCACAAGAAGAGTGCACATCCAGAAACTACAGAGAAGTCTGTCTGGGCATTGATGAGTTCATCAACCAGATCACAACCTTCGGCTGCCCTGTTTAGTTTCTCTTCTTGCTTTgttaaatgtacatttttgtaACATTGCAATCCAGGTTGCATGCCCTGTCATAACTCATTGTAACCTATAGAGTGAATAGAGAGAGATGAGTTCGCCCACTTGGAATATATTCTGTTAGAAACTGCAGTAAATTATGTACACCGTGCATTTAAAAAAAGTTAACATATGATGATGACGACTGCAAATGGCACATTTTTACATTTAAGTTTACCATTTGCAGTTGTTATTGTCATTGATTACAATGACATAGTCACATTTCTATGGCTTTATTTTTGCACTAAAATGACCCTGCCTGCTGTAATATGcatgaaataaatgtattaaaaaaa

Function

NR:

description
LOW QUALITY PROTEIN: complement C3-like

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0006957 complement activation, alternative pathway biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947707.1 True 1784 mRNA 0.47 1 37805009 37806792

Neighbor

gene id symbol gene type direction distance location
LOC118939581 LOC106604987 coding downstream 8621 37791239 ~ 37796388 (-)
LOC110489008 LOC106604987 coding downstream 22827 37777404 ~ 37782182 (-)
LOC118939571 NA coding downstream 328247 37463985 ~ 37476762 (-)
LOC110501508 LOC106605132 coding downstream 341170 37442359 ~ 37463839 (-)
LOC110488968 LOC106605134 coding downstream 467402 37332647 ~ 37337607 (-)
LOC110489027 c3-1 coding upstream 11322 37818114 ~ 37823518 (-)
LOC110489074 LOC106605123 coding upstream 113897 37920689 ~ 38000324 (-)
LOC110489088 LOC106583156 coding upstream 196267 38003059 ~ 38029406 (-)
LOC110501529 NA coding upstream 229174 38035966 ~ 38046439 (-)
LOC110489105 LOC106605178 coding upstream 239908 38046700 ~ 38048666 (-)
G139256 NA non-coding downstream 30825 37773682 ~ 37774184 (-)
G139243 NA non-coding downstream 41296 37762548 ~ 37763713 (-)
G139000 LOC105030512 non-coding downstream 107656 37697059 ~ 37697353 (-)
G138979 NA non-coding downstream 122638 37682067 ~ 37682371 (-)
G138978 NA non-coding downstream 123327 37681368 ~ 37681682 (-)
G139310 NA non-coding upstream 95802 37902594 ~ 37906515 (-)
G139309 LOC106605124 non-coding upstream 100158 37906950 ~ 37911825 (-)
G139333 NA non-coding upstream 140967 37947759 ~ 37948117 (-)
G139231 NA other downstream 52051 37747441 ~ 37752958 (-)
pnrc2 LOC106605140 other downstream 955664 36844929 ~ 36849373 (-)
G138080 NA other downstream 976612 36825792 ~ 36828397 (-)
G137839 LOC106605146 other downstream 1166004 36634193 ~ 36639005 (-)
G140479 NA other upstream 1021117 38827909 ~ 38828195 (-)
G140879 NA other upstream 1257070 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 1957141 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 2417830 40224622 ~ 40298333 (-)

Expression


Co-expression Network