LOC110489018 (LOC106597357)


Basic Information

Item Value
gene id LOC110489018
gene name LOC106597357
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37806759 ~ 37810055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933861.1
ATGTGGGTCGGCAACTTGCTGTGTCTGGCCGCTCTGGCTGTAGCCCTCTCCTTACCTACCTTATCTGATGGAGCAGCACTACTAGTGTTGTCagctcctaacctgctgcgtgtGGGCAGTAATGAGAACATCTTTGTGGAGTCTCAGGACCATCAGAAGCAGTATGTGGTCCTGCAGGCCCAGTTTCCTGACTGCCTCCTGGAGAAGGTTGTCCTGCTCTCCTTCCAGTCTGGATACATCTTCATCCAGACTGACAAGACCATTTACACTCCGGCCAGCAACGTCTACTACAGAGTGTTCTCTATGACTCCAGGCCTGGAGCCTCTGACCAGGGAGAACAAGAACAAAGACATCACAATCTCTGTGGAGATCATGACTCCTGAGAACATCACCATCTTCAGGGAGATCATCACCCCAGACAAGGGAGTCACATCTGGACGGTTCATTCTCCCTGCAATTGTCAGGTTCGGGACATGGCATGTAGTCACAAGGTTCCAGAGCACTCCTCAAAAGACCTTCTCATCTGACTTTGAGGTCAAGGAGTATGTTCTGCCCAGCTTCGAGGTTAGTCTGACCCCAGCTAAAGCCTTCTTCTATGTTGATGACAAAGACCTGACTGTTGACATCACTGCCAGGTATATATACGGTAAGGAAGTGACAGGGACAGGCTATGTGGTGTTTGGTGTCATCACAACAGATAACGAGAAAAATAGTTTCCCTGCCTCTCTGCAGAGAGTAGAGATCAAAGACGGTAAAGGAGTGGCTTGTCTGAAAAAGGAACACATCACACAGACTTTCCACAACATCCATGATCTGGTCAAACAGCCCATCTTCGTATCAGTCAGCGTGTTAACAGAGGGTGGGGGTGAAATGGTAgaggcagagaagagagggatccaGATTGTCACTTCGCCATACACCATCCTCTTCAAGAGAACACCCAAATACTTCAAACCTGGCATGCCCTTTGACGTCTCTGTTTACATTACAAATCCCGACAACTCTCCAGCCATTGGAGTGGAGGTTGAGGTGACTCCAGATAATGCTAAAGGGGTGACCAGGGCCAATGGTTTTGCCAAAGTTACAATTAACACTGTGGCATCTGCCAGAGAGCTGGCAATCACTGTGAAGACCAAGGACCCGGCGATCCTCCACAACAGACAGGCGGAGGCCACCATGAAGGCTCTCCCCTACAGAACTTCCACCAGCAACTTTCTCCATGTCGGGGTTGACTCTAATGAGCTGAAGATAGGAGAACCCATTAAGATCGAACTGAACCTGGGATCCACCCCCATACAAATCCATGACATTACATACATGTTCCTGAGTAGAGGTCAGCTGGTGAAAGTGGGCCGATTTAAAAGACAGGGCAACGCgctggtaacactgtcagtgCCTGTCTCCAAGGAGCTGCTTCCGTCGTTCCGCATCGTAGCGTACTACCATGTGGGAGCAGCTGACCTGGTGGCAGACTCTGTCTGGGTTGACATCAAGGTATCCTGCATGGGATCACTGAAAGTGACATCCACCAGGCCCAAGGCATCCTATGAGCCTCGTAGGGCTTTCAGTTTGACCATCACTGGAGACCCGGGAGCGAAAGTAGGACTGGTGGCTGTAGAGAAGGGAGTCAACGTTCTCAACAGCAAACATCGTCTCACACTGACCAAGATCTGGGACACCATAGAGAAGAAGCATGATACAGGCTGTACAGCTGGAGGGGGAGCAGACAATATGGGGGTGTTCTACGATGCTGGTCTGGTATTTGAGACCAACACTGCTAACGGGACTGGGATCAGAACAGACCCCAGCTGTCCTGTTAGTTCTAGGCGGAGACGAGCAGTGACCATCAGTGACGTCATCACTAGTATGGCCAGTAAGTACAATGGTCTGGCCAAGGAGTGTTGTGTGGACGGGATGAGGGACAACACCATGGGATATACCTGTGACAGACGGACCCAGTACATCTCAGATGGGGACGTCTGCGTCCAAGCCTTCCTTGTCTGCTGCACTGAGATGGCCTCCAAGAAGATAGAATCCAAACACGATGCACTGCTGCTCTCACACAGTGAGGAGGATTATGATGATGCGTACATGGAGTCTGAAGACATTGTGTCTCGTAGTCAGTTCCCTGAAAGCTGGATGTGGGAGGACACCAATCTTCCTGAATGCCCTGCCGAAAACAAGCACTGTGAGTCCACATCGGTAATAAGGAACATCTACCTAAAGGATTCCATCACCTTCTGGGAAATAAGAGCCATCAGCCTGTCTAAAATTCATGGTATCTGTGTGGCAGATCCGTTTGAGATGATAGTTCTAAAGGAGTTTTTCATCGACCTCAAGCTGCCCTACTCAGCCGTCCGCAATGAACAGCTGGAGGTCAAAGCAATCCTCCACAACAACAGCGAAGACcccatcactgtgtgtgtggagCTAATGGAGAATGACGAGGTGTGCAGCTCGGCAAGCAAGAAGGGTAAGTACAGGCAGGAAGTGAACATGGACGCCATGTCCACCCGGGTTGTCCCCTATGTCATCATCCCTATGAAACTGGGCATGTACTCCATTGAGGTCAAGGCATCTGTGAAAAACTATGGCAGCAATGACGGGGTGAAAAGGGATCTGCGCGTTGTGGCTGAGGGAGTACTGGTCAAGAAGGAAACCAACGTACTCCTGAACCCGGCTAAACATGGTGGTGAGCAGACGTCACACATACCCAGTGAAGTTCCCCGGAACCAGGTGCCAAACTCTGATGCTTACACACTGATCAGTCTGACAGGTGGAGAGCAGACCAGTGTGCTGGTGGAGCAGGCCATCAGTGGAGACTCTCTGGGCAGTCTGATAGTTCAGCCAGTCGGATCTGAGGAACAGAACATGAACTACATGACCCTGCCTGTCATTGCTGCACACTACCTAGACAACACAAAAAAGTGGGAGGATATTGGCTTTGACAGACGGAACACAGCCATCAAGTACATCAACATTGGTTACCAACGTGAGCTGGCCTACCGTAAAGAAGATGGCTCCTATGCTGCCTGGGTCAGCAGACAGAGCAGCACCTGGCTGACAGCATACGTGGTGAAGGTGTTTGCCATGTCCATGTTCAGGAAAACGTGCTCTGTACTGCTGTCAAGTGGCTGA

Function

NR:

description
LOW QUALITY PROTEIN: complement C3-like

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0006957 complement activation, alternative pathway biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933861.1 True 3138 mRNA 0.51 2 37806759 37810055

Neighbor

gene id symbol gene type direction distance location
LOC118939581 LOC106604987 coding downstream 10371 37791239 ~ 37796388 (-)
LOC110489008 LOC106604987 coding downstream 24577 37777404 ~ 37782182 (-)
LOC118939571 NA coding downstream 329997 37463985 ~ 37476762 (-)
LOC110501508 LOC106605132 coding downstream 342920 37442359 ~ 37463839 (-)
LOC110488968 LOC106605134 coding downstream 469152 37332647 ~ 37337607 (-)
LOC110489027 c3-1 coding upstream 8059 37818114 ~ 37823518 (-)
LOC110489074 LOC106605123 coding upstream 110634 37920689 ~ 38000324 (-)
LOC110489088 LOC106583156 coding upstream 193004 38003059 ~ 38029406 (-)
LOC110501529 NA coding upstream 225911 38035966 ~ 38046439 (-)
LOC110489105 LOC106605178 coding upstream 236645 38046700 ~ 38048666 (-)
G139256 NA non-coding downstream 32575 37773682 ~ 37774184 (-)
G139243 NA non-coding downstream 43046 37762548 ~ 37763713 (-)
G139000 LOC105030512 non-coding downstream 109406 37697059 ~ 37697353 (-)
G138979 NA non-coding downstream 124388 37682067 ~ 37682371 (-)
G138978 NA non-coding downstream 125077 37681368 ~ 37681682 (-)
G139310 NA non-coding upstream 92539 37902594 ~ 37906515 (-)
G139309 LOC106605124 non-coding upstream 96895 37906950 ~ 37911825 (-)
G139333 NA non-coding upstream 137704 37947759 ~ 37948117 (-)
G139231 NA other downstream 53801 37747441 ~ 37752958 (-)
pnrc2 LOC106605140 other downstream 957414 36844929 ~ 36849373 (-)
G138080 NA other downstream 978362 36825792 ~ 36828397 (-)
G137839 LOC106605146 other downstream 1167754 36634193 ~ 36639005 (-)
G140479 NA other upstream 1017854 38827909 ~ 38828195 (-)
G140879 NA other upstream 1253807 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 1953878 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 2414567 40224622 ~ 40298333 (-)

Expression


Co-expression Network