sh3d21 (LOC106605124)


Basic Information

Item Value
gene id sh3d21
gene name LOC106605124
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37891951 ~ 37911330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561628.2
TAGAGGGAAGGAGGGCCCTGGCTAGCCATATATAGCTTTGCTTCTTGGGCAATACTTTCTTTCAGTTCTCCTTCTGTAGCATgaggtgtctgtctgtcctctgaaGAGGATTTATTTACATAAACGTCTAGAAGAGAGAGTAAAGCTTTCTAAGAAGTCATGGAGGTGCTGGTGCTGATAGCCTTTGAGGGCACAATGGGTGATGAGATGACGGTGCAGGTGGGAGACGTAGTGACGAGTGTCTCCAATGCCAGCGAGGAGGGCTGGCTGGAGGGGGAACTGAGGGGCAAGAGGGGCATCTTCCCCTCTAACTTCGTCAAGGAGGTGCCAGTGTATTTGATAGGTGACAGCAAGAGGGAACCAAGAAGCATACGTAAATCAAGGATGATTAAACAAACAAGGAAGTGTGAGGTGGCCTTTGCCTACAGTCCCTTGAATGAGGACGAGCTGGAGCTGGTTGTCGGGGAGACCATTGAGATCCTCAGAGAGATTGAAGATGGGTGGTGGATGGGAATGAAAAGTGGTAAAGTGGGAGCGTTTCCATCAAACTTCACCAAAGAGATATTTGTCTCTCCAAAAGACGTCAAGCATAACGAGAGCAAAACCAGACCCAAACTCTCAGATACAATGTTTAGTAAAGAGacaAAGCTACCTCAGAGGACGAGTGTTaggaacaaaacaaaaaatgTGAAGGAATGTTGTCAAGTCATGTTCGACTATCCAGCCTTGACCGAGGATGAGTTAAATCTAAAGAAGGGAGACATTGTTACAATCATCACCAAGGAAACAGAGGACGAGGGctggtgggagggagagatgaacggACGCAGAGGTTTTTTCCCCGACAACTTTGTCATGGTGATACCGACGACAGATGGTCTCCAATCTGGGAGCACCAGCCAACCACCTGCGCGCCGTGGCACGGAAAGACGCTCAGTCAAGGCAGAGGGTTCAGCGATGGAGAAGAGCAGCCCTGCAAAAGCAAAagATGAGAAACCAGAGAGTAAAGACCTGAGAAGCAATCCCCCAACCAAAGTTAAGCTCCCTGCACCAAGTAGACCTGCACAACCACCTCCAGTGAAGGACAAGCCTCTGAAATTTGGTAGTAGCAAAGCCAATGGCGATCTCCCTCCTCTTTCACCAAAATGTTCAGAGGACAGCAACTCGGACCAGTTTGACGGAGTGGAGGTGTCCCCTGAGAAACTGAGTCACCCCACAGCCAACAGAGCCAAACCCCCACAGAGACGACCCCCATCAGCCCTCGTCACCAGTCCACAGATTTCAGAAAGTCATTCACCACCATCCAAGCCTGAGCATCCTACCAAGAATCCAGTACCTTCCAGGCTAGCACTTCCCAAGGCTGTAGTGGAGGCCAGGGCAACCCAGGAGGAGAAGCCTTGTCTGGACAGCCTACACGCTGAGGTCAGGGAGCTGAAGATGGTTCTGGAGCTGCTGCAAAACAGACATGAACGAGACATACAGGAACTGAAAGAGGAACTGAGAGACGAGAGAAACAAACGTGTGGCGCTGCAGGAGGAGGTACATGGTCTTAGGACTAAACATTAATCCCAACTGACACCATGACCGGGCGGTACATCTAAGTCAGGCTCTATAATGTCATTCCCTTGAACACAAACTTGAAGTGAAATTCAAAATGTTCCTGGCGTTGGAGTGCAAGAGAAGAAAGAAAGGATGCATGTCTGCTTCCTCTGCAGACAAACCAGCTGAGGCCACATTAAGGGCTGGAATCAATCCGTATCTCTGAAGTATCACGGAAGATCCGCTTTATAGCTCGATGATTAAAAATGTAAAAGCAATGTTCCAACGTTTGCATTTAAGGTAAACGCTGCATCGGCAATTacctttaaagggatactttgggattttggcaatgaagtcTTTTATCTACTTCCCCGGCGTCAGATGAAcccgtggataccatttttatgtctctatgtGCAGTTTGAAAGAatttgctaactagcattagtgcaATTACTAACTAacgttagtgcaatgactggaagtatctactagcatgctagtagataccatagacttccagccaTTGGCCTAACTCTAGTTAGCACtggctcacaaaactacctctaacatTGAGtacatctgactctggggaaatagataaagggcttcattgccaaaatcccgaaatATACCTTTACATTTTAACACGGACCTTCCGTGATACTTTTGCGATAACGAGTGAATACAGACATAGATTGTAGTCTTCCATTTTGTTTGAGGGCATTCTGGACTTGATTGGCAAGGGACCAAAATTGGCAGGGGGCCAAAATGCTTTGTATAGATCGACCAAAATACTTTGTAGCCGGGATTCAATTCAAGGTGGGTTACAGTGCAGTGCACAATACAACTGATAACGTGTCTTTTAAAGTACTTTCACCCAATATGTACATGGTAAACACTGCACACGTTGGACCAAGCCTAAATCACTTTTAAAAGTATGTTATAGTGTGCCGTGCTTTAACACGGGACACTCAATGCCTTGCATTGAATCCCGGCCTTTGGAtagaaaatatgttttattttatattgATGATATTGTATATTTCATTGAAAGAACAACACCAACCGAAAATACAGAGGACTGGTTTTATACATTGAATGTGGGCCACGTTTCTCCTGTAAAAGCATATTTCTTATTTTTATGAGCATGTTTTGAAGCACAGTGTTTACAATATTTTGAAGCACTGTGTTTGCGGAACATGAGTCAACTTAACAAACTACTTGTATCTTTTGTGTAAACATTGTATATAAGAGTAACTATTTTGTGTCTCttttataaaatataaaataataccTGTCCAAAATACTCCAGTGACTCAGCAACTATTCTGCAATGCTGCATGCATCCATTGGGAGGCACCTTTGTACTACTGTTGTGAATTCAGTGCTGCATTGTAGTTGGCTTTCAGGCCACAAAAACAAAACTATATAAGTTAATTCTGTATAAATGAACCCTTTTCTCTTTTTTGGATGTGTCTTTAAGAATAGGTGCCAGGAGGTCACACTTGTGATCTAAATGTTAAATTAGTCATATAAAGGGTAAAGTGAAACTAATTAAAACCTTGAAATTAAGTGATCCGCCAA
>XM_021561620.2
GAGGGAAGGAGGGCCCTGGCTAGCCATATATAGCTTTGCTTCTTGGGCAATACTTTCTTTCAGTTCTCCTTCTGTAGCATgaggtgtctgtctgtcctctgaaGAGGATTTATTTACATAAACGTCTAGAAGAGAGAGTAAAGCTTTCTAAGAAGTCATGGAGGTGCTGGTGCTGATAGCCTTTGAGGGCACAATGGGTGATGAGATGACGGTGCAGGTGGGAGACGTAGTGACGAGTGTCTCCAATGCCAGCGAGGAGGGCTGGCTGGAGGGGGAACTGAGGGGCAAGAGGGGCATCTTCCCCTCTAACTTCGTCAAGGAGGTGCCAGTGTATTTGATAGGTGACAGCAAGAGGGAACCAAGAAGCATACGTAAATCAAGGATGATTAAACAAACAAGGAAGTGTGAGGTGGCCTTTGCCTACAGTCCCTTGAATGAGGACGAGCTGGAGCTGGTTGTCGGGGAGACCATTGAGATCCTCAGAGAGATTGAAGATGGGTGGTGGATGGGAATGAAAAGTGGTAAAGTGGGAGCGTTTCCATCAAACTTCACCAAAGAGATATTTGTCTCTCCAAAAGACGTCAAGCATAACGAGAGCAAAACCAGACCCAAACTCTCAGATACAATGTTTAGTAAAGAGacaAAGCTACCTCAGAGGACGAGTGTTaggaacaaaacaaaaaatgTGAAGGAATGTTGTCAAGTCATGTTCGACTATCCAGCCTTGACCGAGGATGAGTTAAATCTAAAGAAGGGAGACATTGTTACAATCATCACCAAGGAAACAGAGGACGAGGGctggtgggagggagagatgaacggACGCAGAGGTTTTTTCCCCGACAACTTTGTCATGGTGATACCGACGACAGATGGTCTCCAATCTGGGAGCACCAGCCAACCACCTGCGCGCCGTGGCACGGAAAGACGCTCAGTCAAGGCAGAGGGTTCAGCGATGGAGAAGAGCAGCCCTGCAAAAGCAAAagATGAGAAACCAGAGAGTAAAGACCTGAGAAGCAATCCCCCAACCAAAGTTAAGCTCCCTGCACCAAGTAGACCTGCACAACCACCTCCAGTGAAGGACAAGCCTCTGAAATTTGGTAGTAGCAAAGCCAATGGCGATCTCCCTCCTCTTTCACCAAAATGTTCAGAGGACAGCAACTCGGACCAGTTTGACGGAGTGGAGGTGTCCCCTGAGAAACTGAGTCACCCCACAGCCAACAGAGCCAAACCCCCACAGAGACGACCCCCATCAGCCCTCGTCACCAGTCCACAGGCTCTGAGTGGCAGGgaccagacagaagcagaaaaaTTGCCTAAACTGCTGGAGATTTCAGAAAGTCATTCACCACCATCCAAGCCTGAGCATCCTACCAAGAATCCAGTACCTTCCAGGCTAGCACTTCCCAAGGCTGTAGTGGAGGCCAGGGCAACCCAGGAGGAGAAGCCTTGTCTGGACAGCCTACACGCTGAGGTCAGGGAGCTGAAGATGGTTCTGGAGCTGCTGCAAAACAGACATGAACGAGACATACAGGAACTGAAAGAGGAACTGAGAGACGAGAGAAACAAACGTGTGGCGCTGCAGGAGGAGGTACATGGTCTTAGGACTAAACATTAATCCCAACTGACACCATGACCGGGCGGTACATCTAAGTCAGGCTCTATAATGTCATTCCCTTGAACACAAACTTGAAGTGAAATTCAAAATGTTCCTGGCGTTGGAGTGCAAGAGAAGAAAGAAAGGATGCATGTCTGCTTCCTCTGCAGACAAACCAGCTGAGGCCACATTAAGGGCTGGAATCAATCCGTATCTCTGAAGTATCACGGAAGATCCGCTTTATAGCTCGATGATTAAAAATGTAAAAGCAATGTTCCAACGTTTGCATTTAAGGTAAACGCTGCATCGGCAATTacctttaaagggatactttgggattttggcaatgaagtcTTTTATCTACTTCCCCGGCGTCAGATGAAcccgtggataccatttttatgtctctatgtGCAGTTTGAAAGAatttgctaactagcattagtgcaATTACTAACTAacgttagtgcaatgactggaagtatctactagcatgctagtagataccatagacttccagccaTTGGCCTAACTCTAGTTAGCACtggctcacaaaactacctctaacatTGAGtacatctgactctggggaaatagataaagggcttcattgccaaaatcccgaaatATACCTTTACATTTTAACACGGACCTTCCGTGATACTTTTGCGATAACGAGTGAATACAGACATAGATTGTAGTCTTCCATTTTGTTTGAGGGCATTCTGGACTTGATTGGCAAGGGACCAAAATTGGCAGGGGGCCAAAATGCTTTGTATAGATCGACCAAAATACTTTGTAGCCGGGATTCAATTCAAGGTGGGTTACAGTGCAGTGCACAATACAACTGATAACGTGTCTTTTAAAGTACTTTCACCCAATATGTACATGGTAAACACTGCACACGTTGGACCAAGCCTAAATCACTTTTAAAAGTATGTTATAGTGTGCCGTGCTTTAACACGGGACACTCAATGCCTTGCATTGAATCCCGGCCTTTGGAtagaaaatatgttttattttatattgATGATATTGTATATTTCATTGAAAGAACAACACCAACCGAAAATACAGAGGACTGGTTTTATACATTGAATGTGGGCCACGTTTCTCCTGTAAAAGCATATTTCTTATTTTTATGAGCATGTTTTGAAGCACAGTGTTTACAATATTTTGAAGCACTGTGTTTGCGGAACATGAGTCAACTTAACAAACTACTTGTATCTTTTGTGTAAACATTGTATATAAGAGTAACTATTTTGTGTCTCttttataaaatataaaataataccTGTCCAAAATACTCCAGTGACTCAGCAACTATTCTGCAATGCTGCATGCATCCATTGGGAGGCACCTTTGTACTACTGTTGTGAATTCAGTGCTGCATTGTAGTTGGCTTTCAGGCCACAAAAACAAAACTATATAAGTTAATTCTGTATAAATGAACCCTTTTCTCTTTTTTGGATGTGTCTTTAAGAATAGGTGCCAGGAGGTCACACTTGTGATCTAAATGTTAAATTAGTCATATAAAGGGTAAAGTGAAACTAATTAAAACCTTGAAATTAAGTGATCCGCCAA

Function

NR:

description
CD2-associated protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561628.2 False 3129 mRNA 0.44 16 37891951 37911330
XM_021561620.2 True 3181 mRNA 0.44 17 37891953 37911330

Neighbor

gene id symbol gene type direction distance location
LOC110489035 LOC106605126 coding upstream 1441 37863201 ~ 37890510 (+)
LOC110501519 LOC106605129 coding upstream 128236 37699215 ~ 37763715 (+)
LOC110489000 LOC106605130 coding upstream 227658 37628152 ~ 37664293 (+)
LOC110488991 LOC106605131 coding upstream 270076 37607093 ~ 37621875 (+)
gnl2 nog2 coding upstream 288657 37572404 ~ 37603294 (+)
LOC110489135 LOC106605117 coding downstream 806962 38718292 ~ 38734398 (+)
LOC110489149 LOC106605176 coding downstream 845903 38757233 ~ 38786447 (+)
LOC110489163 LOC106605115 coding downstream 878206 38789536 ~ 38823441 (+)
LOC110489178 LOC106605114 coding downstream 912255 38823585 ~ 38847695 (+)
LOC110533769 LOC106583263 coding downstream 943852 38855182 ~ 38857226 (+)
G139040 NA non-coding upstream 115002 37776591 ~ 37776949 (+)
G139038 LOC106586992 non-coding upstream 118447 37772990 ~ 37773504 (+)
G138991 NA non-coding upstream 198770 37692982 ~ 37693181 (+)
G138805 NA non-coding upstream 301394 37535056 ~ 37590557 (+)
G138640 NA non-coding upstream 359838 37531419 ~ 37532113 (+)
G139102 NA non-coding downstream 33572 37944902 ~ 37945164 (+)
G139103 NA non-coding downstream 34014 37945344 ~ 37945605 (+)
G139139 LOC106605122 non-coding downstream 91736 38003066 ~ 38007585 (+)
G139167 NA non-coding downstream 125145 38036475 ~ 38036812 (+)
G139177 NA non-coding downstream 137608 38048938 ~ 38049391 (+)
G139004 NA other upstream 67941 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 1489980 36354883 ~ 36405310 (+)
G137058 LOC106605156 other upstream 1791674 36099611 ~ 36100277 (+)
G136994 NA other upstream 1854210 35982832 ~ 36037741 (+)
LOC100653444 LOC106584591 other upstream 2035551 35855149 ~ 35865269 (+)
G139089 LOC106605123 other downstream 8405 37919735 ~ 37940714 (+)
G139101 NA other downstream 32412 37943742 ~ 37944012 (+)
G139179 NA other downstream 140029 38051359 ~ 38051744 (+)
LOC110489834 eny2 other downstream 3627965 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 4057044 41968374 ~ 41969317 (+)

Expression


Co-expression Network