LOC110501529


Basic Information

Item Value
gene id LOC110501529
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38035966 ~ 38046439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110501529
ATGTCTTCGAGGATGCTACCCCTGCTTTTTATTAATCTCAGTGGAGAAATGCTCTACATCTTGGAGCTCAGAATATTCCAGCTGACAAAGCCAAGAAAGCTGATTGGATAGAGAATGACAGAAGGAGAGTTATGAATGACATCATCACCACCATGTTCAATAAAACGTTTTTGGAGGAGCTGTTCAAGCCACAGGAGCTGTGTTTGACCGACTGGCCCATGCCTCCATCATGAGACTCAACTAGGCCAGCATGGACAAGCTGTATGACTTGATGACCATGGCCTTCAAGTACCAGGTGCTCCTCTGCCCGCGGGCCAAAGATATTCTCCTTGTGTCCTTCAACCATCAAGGATTTTGTGAAGGACACCGCAAGCGTTCTCAGCCAGGTTGACGAGACATACAGACATAGAGGTAAGATGTACACACCCTTGTCTAGTGGCGAATTTCAGCTCATCCGGCAAACGCTCCTCATCTTCTTTCAAGACATGCACATAAGGGTGTCCATCTTCCTCAAAGACAAAGTGCAGAATTCCAACAAACGTTTTGTCCTCCCGATCTCAGGTCCTGTGCCCCATGGAACACACATCCCAGGTACCATCAGAATGTTCAGCTGCAATGGCGAAGAGGTGAAGAGACTGCAGTTCCGTAACGGTGGGAACTACACCAGTGTTCTCCGCGAGGGATGATTTGAGATGTTTGGAGAGAGGGTCATCAAGCTGGGCACTAACATGTACAGTGTAAGCCATCCGGTAGAAACACACATGTCAGGGACATCCAAAAACTCTGCGGAGGCCTTGATATCGAGACCAGACGAGTTTGCATATGATGTCATAAAAATCCAAGCGACTAAGAACCATCAAGCCAATGCAGAGCTGGTCAAGATCATGGGGGACTTTACGGAGGAGGCTGGCGAACCGTGCCCATTGAGTGCCAGCAGTAAAGGGGATGACCTTCTGGCCATGATGGATGGGCTGTGA

Function

NR:

description
protein OSCP1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110501529 True 977 mRNA 0.49 10 38035966 38046439

Neighbor

gene id symbol gene type direction distance location
LOC110489088 LOC106583156 coding downstream 6560 38003059 ~ 38029406 (-)
LOC110489074 LOC106605123 coding downstream 35642 37920689 ~ 38000324 (-)
LOC110489027 c3-1 coding downstream 212448 37818114 ~ 37823518 (-)
LOC110489018 LOC106597357 coding downstream 225911 37806759 ~ 37810055 (-)
LOC118939584 c3-1 coding downstream 229174 37805009 ~ 37806792 (-)
LOC110489105 LOC106605178 coding upstream 261 38046700 ~ 38048666 (-)
LOC110489095 LOC106605120 coding upstream 2458 38048897 ~ 38053364 (-)
LOC110489123 LOC106605177 coding upstream 39726 38086165 ~ 38087398 (-)
LOC110489131 LOC106605119 coding upstream 332753 38379192 ~ 38494341 (-)
LOC110489143 LOC106605116 coding upstream 694288 38738678 ~ 38779271 (-)
G139333 NA non-coding downstream 87849 37947759 ~ 37948117 (-)
G139309 LOC106605124 non-coding downstream 124141 37906950 ~ 37911825 (-)
G139310 NA non-coding downstream 129451 37902594 ~ 37906515 (-)
G139385 NA non-coding upstream 7335 38053774 ~ 38054030 (-)
G139386 NA non-coding upstream 8468 38054907 ~ 38055140 (-)
G139318 csf3r non-coding upstream 18599 38065038 ~ 38066918 (-)
G139393 NA non-coding upstream 21298 38067737 ~ 38067937 (-)
G139437 NA non-coding upstream 50445 38096884 ~ 38100499 (-)
G139231 NA other downstream 283008 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 572208 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 1186621 36844929 ~ 36849373 (-)
G138080 NA other downstream 1207569 36825792 ~ 36828397 (-)
G137839 LOC106605146 other downstream 1396961 36634193 ~ 36639005 (-)
G140479 NA other upstream 781470 38827909 ~ 38828195 (-)
G140879 NA other upstream 1017423 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 1717494 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 2178183 40224622 ~ 40298333 (-)

Expression


Co-expression Network