LOC110489105 (LOC106605178)


Basic Information

Item Value
gene id LOC110489105
gene name LOC106605178
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38046700 ~ 38048666 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561695.2
ATGCTCTTTCCTCTGCTCTCAAGTGACTGAAGCTGACCCCATTTGATTGACATGTCGAACCCAGTCATCACCCACCAGCCAGGAGCAGGCTCTTATGGGACAAATGTGCAGACTGGCGAGTGGAGCACTGGGCTGTGCTCCTGCTGCAGTGACATCCTAGTCTGTGCCATGGGCTTCATCTGCCCACTAGCATTGAGTTGCTACACAGCTAACAAGTATGGTGAGAACGCATGCCTGGCCTGTGTTCCAGGAGGCATGACAGCCATGAGGACACACATGAGATTGACCTATGGGATTCAGGGGACGATATGCAACGATGCGTTGATGACCTGTTGCTGTGGATTCTTTGAGATGTGCAGGATGGCCCGTGAAATTCGCATCAGGAATGGCGACGTTTGACTTGTACAGTCAATTGAAGACATTTTCAAGTGGAAGTTAAATTAACCTCATGTCACATATTGTTGATACAAATCGTCATTGTTATACTATGTACATTTTAACTTTTGTATTGATTAAATTTGACCCCCTACTCTCAAACAGTACTGCGCAAAGAATTCATAGCACCATGTATGAACCAAAGATGTACAATAAAGTTTTGTTTTTTCTTgtttccaatg
>XM_021561685.1
CAGCGCTTGTTCACAGGTTTAGTATCACAACTTCCTGTTAAAGTGTTTCGACTCAGATCTGGAGAAGCTCAGCCGCAGACAAGATAGGTGACTGAAGCTGACCCCATTTGATTGACATGTCGAACCCAGTCATCACCCACCAGCCAGGAGCAGGCTCTTATGGGACAAATGTGCAGACTGGCGAGTGGAGCACTGGGCTGTGCTCCTGCTGCAGTGACATCCTAGTCTGTGCCATGGGCTTCATCTGCCCACTAGCATTGAGTTGCTACACAGCTAACAAGTATGGTGAGAACGCATGCCTGGCCTGTGTTCCAGGAGGCATGACAGCCATGAGGACACACATGAGATTGACCTATGGGATTCAGGGGACGATATGCAACGATGCGTTGATGACCTGTTGCTGTGGATTCTTTGAGATGTGCAGGATGGCCCGTGAAATTCGCATCAGGAATGGCGACGTTTGACTTGTACAGTCAATTGAAGACATTTTCAAGTGGAAGTTAAATTAACCTCATGTCACATATTGTTGATACAAATCGTCATTGTTATACTATGTACATTTTAACTTTTGTATTGATTAAATTTGACCCCCTACTCTCAAACAGTACTGCGCAAAGAATTCATAGCACCATGTATGAACCAAAGATGTACAATAAAGTTTTGTTTTTTCTTgtttccaatg
>TU160230
AGAACATCAGATATTGGGTGTTTATCGACCTCATATGTTAAACCAAGGTTATATTCACAATCTCTCACCTGTGAATTGACCTTGAAACCTATAATTCTGAGGAATGGTTTAGTATCACAACTTCCTGTTAAAGTGTTTCGACTCAGATCTGGAGAAGCTCAGCCGCAGACAAGATAGGTGACTGAAGCTGACCCCATTTGATTGACATGTCGAACCCAGTCATCACCCACCAGCCAGGAGCAGGCTCTTATGGGACAAATGTGCAGACTGGCGAGTGGAGCACTGGGCTGTGCTCCTGCTGCAGTGACATCCTAGTCTGTGCCATGGGCTTCATCTGCCCACTAGCATTGAGTTGCTACACAGCTAACAAGTATGGTGAGAACGCATGCCTGGCCTGTGTTCCAGGAGGCATGACAGCCATGAGGACACACATGAGATTGACCTATGGGATTCAGGGGACGATATGCAACGATGCGTTGATGACCTGTTGCTGTGGATTCTTTGAGATGTGCAGGATGGCCCGTGAAATTCGCATCAGGAATGGCGACGTTTGACTTGTACAGTCAATTGAAGACATTTTCAAGTGGAAGTTAAATTAACCTCATGTCACATATTGTTGATACAAATCGTCATTGTTATACTATGTACATTTTAACTTTTGTATTGATTAAATTTGACCCCCTACTCTCAAACAGTACTGCGCAAAGAATTCATAGCACCATGTATGAACCAAAGATGTACAATAAAGTTTTGTTTTTTCTTgtttccaa
>TU160231
TGGAGAAGCTCAGCCGCAGACAAGATAGGTGACTGAAGCTGACCCCATTTGATTGACATGTCGAACCCAGTCATCACCCACCAGCCAGGAGCAGGCTCTTATGGGACAAATGTGCAGACTGGCGAGTGGAGCACTGGGCTGTGCTCCTGCTGCAGTGACATCCTAGTCTGTGCCATGGGCTTCATCTGCCCACTAGCATTGAGTTGCTACACAGCTAACAAGTATGGTGAGAACGCATGCCTGGCCTGTGTTCCAGGAGGCATGACAGCCATGAGGACACACATGAGATTGACCTATGGGATTCAGGGGACGATATGCAACGATGCGTTGATGACCTGTTGCTGTGGATTCTTTGAGATGTGCAGGATGGCCCGTGAAATTCGCATCAGGAATGGCGACGTTTGACTTGTACAGTCAATTGAAGACATTTTCAAGTGGAAGTTAAATTAACCTCATGTCACATATTGTTGATACAAATCGTCATTGTTATACTATGTACATTTTAACTTTTGTATTGATTAAATTTGACCCCCTACTCTCAAACAGTACTGCGCAAAGAATTCATAGCACCATGTATGAACCAAAGATGTACAATAAAGTTTTGTTTTTTCTTgtttccaa
>TU160233
ATTAATCATATGATGACTTCCCTGAACATAGCTTGCAATCGTGTTTACGAGAACTGTAAGAACATCAGATATTGGGTGTTTATCGACCTCATATGTTAAACCAAGGTTATATTCACAATCTCTCACCTGTGAATTGACCTTGAAACCTATAATTCTGAGGAATGGTTTAGTATCACAACTTCCTGTTAAAGTGTTTCGACTCAGATCTGGAGAAGCTCAGCCGCAGACAAGATAGGTGACTGAAGCTGACCCCATTTGATTGACATGTCGAACCCAGTCATCACCCACCAGCCAGGAGCAGGCTCTTATGGGACAAATGTGCAGACTGGCGAGTGGAGCACTGGGCTGTGCTCCTGCTGCAGTGACATCCTAGTCTGTGCCATGGGCTTCATCTGCCCACTAGCATTGAGTTGCTACACAGCTAACAAGTATGGTGAGAACGCATGCCTGGCCTGTGTTCCAGGAGGCATGACAGCCATGAGGACACACATGAGATTGACCTATGGGATTCAGGGGACGATATGCAACGATGCGTTGATGACCTGTTGCTGTGGATTCTTTGAGATGTGCAGGATGGCCCGTGAAATTCGCATCAGGAATGGCGACGTTTGACTTGTACAGTCAATTGAAGACATTTTCAAGTGGAAGTTAAATTAACCTCATGTCACATATTGTTGATACAAATCGTCATTGTTATACTATGTACATTTTAACTTTTGTATTGATTAAATTTGACCCCCTACTCTCAAACAGTACTGCGCAAAGAATTCATAGCACCATGTATGAACCAAAGATGTACAATAAAGTTTTGTTTTTTCTTgtttccaa
>TU160232
TGGAGAAGCTCAGCCGCAGACAAGATAGGTGACTGAAGCTGACCCCATTTGATTGACATGTCGAACCCAGTCATCACCCACCAGCCAGGAGCAGGCTCTTATGGGACAAATGTGCAGACTGGCGAGTGGAGCACTGGGCTGTGCTCCTGCTGCAGTGACATCCTAGTCTGTGCCATGGGCTTCATCTGCCCACTAGCATTGAGTTGCTACACAGCTAACAAGTATGGTGAGAACGCATGCCTGGCCTGTGTTCCAGGAGGCATGACAGCCATGAGGACACACATGAGATTGACCTATGGGATTCAGGGGACGATATGCAACGATGCGTTGATGACCTGTTGCTGTGGATTCTTTGAGATGTGCAGGATGGCCCGTGAAATTCGCATCAGGAATGGCGACGTTTGACTTGTACAGTCAATTGAAGACATTTTCAAGTGGAAGTTAAATTAACCTCATGTCACATATTGTTGATACAAATCGTCATTGTTATACTATGTACATTTTAACTTTTGTATTGATTAAATTTGACCCCCTACTCTCAAACAGTACTGCGCAAAGAATTCATAGCACCATGTATGAACCAAAG

Function

NR:

description
PLAC8-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561695.2 False 617 mRNA 0.45 4 38046700 38048310
XM_021561685.1 False 682 mRNA 0.45 4 38046700 38048406
TU160230 False 770 TUCP 0.44 5 38046702 38048608
TU160231 False 621 TUCP 0.45 4 38046702 38048347
TU160233 False 828 TUCP 0.43 5 38046702 38048666
TU160232 True 586 TUCP 0.47 4 38046737 38048347

Neighbor

gene id symbol gene type direction distance location
LOC110501529 NA coding downstream 261 38035966 ~ 38046439 (-)
LOC110489088 LOC106583156 coding downstream 17294 38003059 ~ 38029406 (-)
LOC110489074 LOC106605123 coding downstream 46376 37920689 ~ 38000324 (-)
LOC110489027 c3-1 coding downstream 223182 37818114 ~ 37823518 (-)
LOC110489018 LOC106597357 coding downstream 236645 37806759 ~ 37810055 (-)
LOC110489095 LOC106605120 coding upstream 491 38048897 ~ 38053364 (-)
LOC110489123 LOC106605177 coding upstream 37759 38086165 ~ 38087398 (-)
LOC110489131 LOC106605119 coding upstream 330786 38379192 ~ 38494341 (-)
LOC110489143 LOC106605116 coding upstream 692321 38738678 ~ 38779271 (-)
LOC110489186 NA coding upstream 803827 38852233 ~ 38854258 (-)
G139333 NA non-coding downstream 98583 37947759 ~ 37948117 (-)
G139309 LOC106605124 non-coding downstream 134875 37906950 ~ 37911825 (-)
G139310 NA non-coding downstream 140185 37902594 ~ 37906515 (-)
G139385 NA non-coding upstream 5368 38053774 ~ 38054030 (-)
G139386 NA non-coding upstream 6501 38054907 ~ 38055140 (-)
G139318 csf3r non-coding upstream 16632 38065038 ~ 38066918 (-)
G139393 NA non-coding upstream 19331 38067737 ~ 38067937 (-)
G139437 NA non-coding upstream 48478 38096884 ~ 38100499 (-)
G139231 NA other downstream 293742 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 582942 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 1197355 36844929 ~ 36849373 (-)
G138080 NA other downstream 1218303 36825792 ~ 36828397 (-)
G137839 LOC106605146 other downstream 1407695 36634193 ~ 36639005 (-)
G140479 NA other upstream 779503 38827909 ~ 38828195 (-)
G140879 NA other upstream 1015456 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 1715527 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 2176216 40224622 ~ 40298333 (-)
G142918 NA other upstream 2814808 40863214 ~ 40863721 (-)

Expression


Co-expression Network