LOC110489095 (LOC106605120)


Basic Information

Item Value
gene id LOC110489095
gene name LOC106605120
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38048897 ~ 38053364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110489095
ccctccgaatggtacacatacacagtccatgtctcaatcGTTTCAAGGCTTACAAATattttctttaacctgtctcctccccttcatctacactgattgaattgaatttaacaagtgacatcaataagggatcgtagcgttcaccttgtcagtctatgccatggaaagagtaggtgttcttaatgtttcgtGCGCTCAGTGTAGTTGCAGGCATAAATCTGGCACTGTCCTATGGTTCATAGAGCAATGGACTAAGAGTCATTATGTATTGTTTGATAATTTGTTTAATTCTTACCAGGTATTGGGAATTTCACCATTCAGCCTGTGAGAAACTATACCCGTGCCATAAGAAAGAAGAAGCCAGTGATGCAAAGTCAGTTGAGTGATCTTCCTCAGACAATGCTGAAAATGGAATATGCCGCTGTTCCACTCGCTCAAACAGCTGATGACCTGGTCAAAAGACTTCTGACACTGGAACTAGCAAGCCATAGCGAAAAGTTGAAATTGAAAACAGAGCAGCTGATTGCAAAAGTCTGGAGGGATGAAGCTGACCGCAGCTCTACAGAAGTCAAGGTGGCCATTTTGACCTCCAAAATCCGAAACTATCAGGAGCACCTGCACAAACATAATAAGGACAAAGCGAACAAGCGATGGATGCTCATGGCCATTGACCCGCAGAAAAAAGCTGCTCAAGCACCTCAGGGTGACGCACTATGACGCCTTTGAACATGTCTGCCAGCAGCTGGGCATCACCTACACTTTCCCCCCGGAGTACTACAGACATGCCACCCGACGCTGGCTGGCCAAGAAGGCCCTGTGCATAAAGGTATTCAAAGAGGTGCAGAAACAGAAACTGGAGCAAAGGAAGAAAATTAAGCAGACCCCTCCCCCCAAACTGGCAGAACCAGCCAAAACAGCAGCTACAGGAACCCAATAAACTACTACAGTATCCAATGTCTGTCTTACTCGATGCATTCAGTCTTGCACTCAATGGGCAAATTAGTTTTGCATGGCACAGTGCCTCAGGTGGGTGGCGTTTGCTCCTTTTTGACTATTCCATTTGTCCTAAGGAGAAATCTCCACCCACCAATGCCACCAGGCcatgtaaaatacattttcccATGTATTGCTATACTGTAATAAGAAACATTAATAACGTATTGTTTGTAGTACACTAAGTCTTCATTCTTCCTGTCCCCAATGCATGTTGATGCATCATCAAACCACATTTGGCCCAATAAATGCAGTGACGCAGATATGTGGTTTTGGTGTGGGCAATATctatgtgctcagcatatgtgatcTGAGACGATCAAATAA

Function

NR:

description
PREDICTED: 28S ribosomal protein S15, mitochondrial-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110489095 True 1320 mRNA 0.44 7 38048897 38053364

Neighbor

gene id symbol gene type direction distance location
LOC110489105 LOC106605178 coding downstream 491 38046700 ~ 38048666 (-)
LOC110501529 NA coding downstream 2458 38035966 ~ 38046439 (-)
LOC110489088 LOC106583156 coding downstream 19491 38003059 ~ 38029406 (-)
LOC110489074 LOC106605123 coding downstream 48573 37920689 ~ 38000324 (-)
LOC110489027 c3-1 coding downstream 225379 37818114 ~ 37823518 (-)
LOC110489123 LOC106605177 coding upstream 32801 38086165 ~ 38087398 (-)
LOC110489131 LOC106605119 coding upstream 325828 38379192 ~ 38494341 (-)
LOC110489143 LOC106605116 coding upstream 687363 38738678 ~ 38779271 (-)
LOC110489186 NA coding upstream 798869 38852233 ~ 38854258 (-)
LOC110489192 LOC106605112 coding upstream 805142 38858506 ~ 38892046 (-)
G139333 NA non-coding downstream 100780 37947759 ~ 37948117 (-)
G139309 LOC106605124 non-coding downstream 137072 37906950 ~ 37911825 (-)
G139310 NA non-coding downstream 142382 37902594 ~ 37906515 (-)
G139385 NA non-coding upstream 410 38053774 ~ 38054030 (-)
G139386 NA non-coding upstream 1543 38054907 ~ 38055140 (-)
G139318 csf3r non-coding upstream 11674 38065038 ~ 38066918 (-)
G139393 NA non-coding upstream 14373 38067737 ~ 38067937 (-)
G139437 NA non-coding upstream 43520 38096884 ~ 38100499 (-)
G139231 NA other downstream 295939 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 585139 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 1199552 36844929 ~ 36849373 (-)
G138080 NA other downstream 1220500 36825792 ~ 36828397 (-)
G140479 NA other upstream 774545 38827909 ~ 38828195 (-)
G140879 NA other upstream 1010498 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 1710569 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 2171258 40224622 ~ 40298333 (-)
G142918 NA other upstream 2809850 40863214 ~ 40863721 (-)

Expression


Co-expression Network