LOC110489123 (LOC106605177)


Basic Information

Item Value
gene id LOC110489123
gene name LOC106605177
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38086165 ~ 38087398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561705.2
TTAGTTaatcaggacaggcaagggttgaGGCTCAGAGTGGCTACATATGTCAAGAGGTTGTAAGGTACTTGAATCATTTGGTCATCAGGTAGTTTGTGTCCATACCACAGAAACAATGCATCGAGCTCTGCCCATATATCTAAGTGTCTTTTTGATTAGCTCTGTCTTTGCTGGAGGTTCCTGGTGTGCCAACACGGCAAGAGCACGAGCAGCTGCCCTGGGTTTGGACCTCCCTAGGACCCAGTTTGTCCCTTACCATCTTCGACCAACACGCCATAGAAGTTTTGATCCCATAAAAACTCACTATGAAAATAATTATGGCCCCAAAGAGGCTGAGTTTGAGCCTATCCTTCCGCACAACGGTGAAATCCAAGGGGATGGATATCCAAATGACTGGGCCTATGGACAAGTCTTCCCCAGAGGCTTTCAACCCAAACCGTCTACACTAAACCATCACGGTTCTGATCTCAGTTTGGCTGACTCCTCTGTCAGCCATTTTGTCTACACTCAAAAGGGACAATTTGTTAGCAGCCACAAGCTCAACTTTGAGCAGGTCAAGAATTCTGTGCCTCGATCAAATGTAATGGTAGCCCCTAGTCAGTTTGAGTACTCAGAGAAAGTGGACAATCGAGGCTACTATAAGCCTGTTGTCGTTCAGCCTGTCACCAGCAGACGTACAACAGCCCAGAGTGTGGTTTCACGACACCAGAGCAGAGGTGCTGTACCGTATGGAAAAAGTATCCTGTGGTCATGGCCACAGTAGACTGTTCCTCTAAATCTGCTCCACCATCCCAGAGTGGACTCATCAGCCCTTGAGCTAAGAAAATTCTGATCCCAGGGCATGGTGCTGTCCATTCTGTGATCAAAGAGCTGAAATATGAAGCAGTGTAAGTGTCAGAAAAAACAGGGATCCGGTTGGTTAAGATCCTAACGGACAAACTTTCCTTTGCAAACTACCTTTGTCTGAGGAGCCAACCATACCATTGGTGAGCAAATCGGTGACCTTGTGCACTTTTTAAGGGCAAAACATGTAAGTTGTGTTTGTAATCCAGTACATTTAC

Function

NR:

description
uncharacterized protein LOC110489123

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561705.2 True 1061 mRNA 0.46 3 38086165 38087398

Neighbor

gene id symbol gene type direction distance location
LOC110489095 LOC106605120 coding downstream 32801 38048897 ~ 38053364 (-)
LOC110489105 LOC106605178 coding downstream 37759 38046700 ~ 38048666 (-)
LOC110501529 NA coding downstream 39726 38035966 ~ 38046439 (-)
LOC110489088 LOC106583156 coding downstream 56759 38003059 ~ 38029406 (-)
LOC110489074 LOC106605123 coding downstream 85841 37920689 ~ 38000324 (-)
LOC110489131 LOC106605119 coding upstream 291794 38379192 ~ 38494341 (-)
LOC110489143 LOC106605116 coding upstream 653329 38738678 ~ 38779271 (-)
LOC110489186 NA coding upstream 764835 38852233 ~ 38854258 (-)
LOC110489192 LOC106605112 coding upstream 771108 38858506 ~ 38892046 (-)
LOC110489249 LOC106605107 coding upstream 865426 38952824 ~ 38963780 (-)
G139393 NA non-coding downstream 18228 38067737 ~ 38067937 (-)
G139318 csf3r non-coding downstream 19247 38065038 ~ 38066918 (-)
G139386 NA non-coding downstream 31025 38054907 ~ 38055140 (-)
G139385 NA non-coding downstream 32135 38053774 ~ 38054030 (-)
G139437 NA non-coding upstream 9486 38096884 ~ 38100499 (-)
G139527 NA non-coding upstream 66550 38153948 ~ 38171922 (-)
G139547 NA non-coding upstream 90218 38177616 ~ 38177842 (-)
G139550 NA non-coding upstream 92311 38179709 ~ 38179917 (-)
G139656 NA non-coding upstream 163861 38251259 ~ 38251717 (-)
G139231 NA other downstream 333207 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 622407 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 1236820 36844929 ~ 36849373 (-)
G138080 NA other downstream 1257768 36825792 ~ 36828397 (-)
G140479 NA other upstream 740511 38827909 ~ 38828195 (-)
G140879 NA other upstream 976464 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 1676535 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 2137224 40224622 ~ 40298333 (-)
G142918 NA other upstream 2775816 40863214 ~ 40863721 (-)

Expression


Co-expression Network