LOC110489143 (LOC106605116)


Basic Information

Item Value
gene id LOC110489143
gene name LOC106605116
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38738678 ~ 38779271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561745.2
TCTCACAGCACTGGACACAGCAACAGGTCAGTGGGTACTACATGGTGTTCTAGCATTCACCATGGAGTGTGACGGCATTGACCTGAAAAGAGCAGAGCTATTTTCATTCTGACATTCTGACTTTCATTCTCTTCACCTTCTGGCTGTTGGGAAAGGCAGGATAGGAGAATGTGAGGTGATACTACAACAGCATGGTGATGCATGTCCTGTGGCGTGCGTTTGCATGGACATTCAAGGGTCTGCTATGTACCTGCAGGTTCTTCTGGGTGAGCCCATACTACTCAATCAAATACATGCCCAATGAACCTCATAGAACAGGAAAGGATCACAACCAtcaagtaaaacaaaaaacagTCTCTGCGGAAATACCAGGAAGTCATTGTAGCAGTGCCATGCAGAGGAGACTGTCCAAAGCTGAGAGGGAGATCCAGGCCCTCAAGACCCAGATTACCTTTGAGAGGGCTACATGGGAGAGGAAGTTTGTGGAAACGCAGAGGAAACAACAGGACCTCCgttatcagCTGATATCTGAGACTGTAGCCAGGCCTGGAAGTCTACTTCAGGTGGGCAGCTTCGAGGACCTTGGCGATTCAGAGGTGAAGAACAGACATCCTTACGATGAAAAGGACCAGGACACCTCAAGCAGCTTGAGCCATTCCAACCAAAGCAGAGGGTCTGAGACGATGTCATCAACAGGCGACACATGCCAAAGCAGCTTGTCTGGCAGACAGGTCTCATTGAACTCAGCATTTGGCTCCAGACCCATTTCTGCTCTGTCTACAGCCACCAGTGGGAGCTCCTGGAGGAGCTACATCGGTCCACACCGGGTCTTTGTGCCTCACTCCCCCCTAGACCTGCAGACGGGACACCGGGTTCGAGTCCTGCTGCCCTCGGGACGGATCAGCACAGGCACGATTCGTTACCTGGGCCACCTGGATGGGGAGCCAGACTTCCATATGGGAGTGGAGCTGGAATCACTTGAACACGGGCAGCAAGACGGCACACACAGGGGACAGTGCTACTTTGAATGCGAGGCTGGCCATGGTGCCTTTGTGCCATTCACCAAGCTGTTGATGGCCTGGGAGTGATGACACCACAGTCTCTATGGTGGAGGGTCACATCTGGATGAATcatttgaactctttggcatcaATCACGAATGGTCTCTGAAAGCAAACTTACACTACCggtttttatttat
>TU161423
acacctactcattcaagggtttttatttatgttttactattttctacattgtagaatgatagtgaagacaacaTGCTTCGAAGATCATAGAATTGTCAATATCGGACCTGTATTAAAGACCAACATTGGCTAAAGAAAAAGAGAACAAAATGATAAGaaatactatatacagtagtatatactgtacatgtatacaATGGTATATGTGGGATGAGCACTAACACTGTTTTCTTTGTGTTCAGAAATAAATAACACTCTTGTAGCCTCGAATAGTAATAGCTTATTATGCATTTCGATTAAAGTACACTAGACAGTATATCTTGTTCATGACATGGCTGATAGAAACATTTGGTATTATGGATATGCAATGCACATTTAGAGTCTCTCAATGACTACTAGaacatacagtgctgtgaaaaagtctttgccccctttctgatttgatctgtttttgcatattatcagatcttcaaccaaaagcTAATgttaaagggaacctgagtttacaaataacagaAAAAATGTATACTTATTTGTGTAATTATGgaacacccaattcccctgtgcGAAAAAGTAATttcactcaataactggttgtgccacctttagctgcaatgactgcaaccaaatgcttcctgtagttgttgatcagtctctcacatcgccaaaatgtcaaatgtgttgctttttagccattttcatgttgacttgattgtgtgttttggatcattgtcttgctgcataacccagctgcacttcagcttcagctcacagactgATGGCCTGACATTTACCTGTAGAATTCTTTGATACAGAGCAgcattcatggttccttctactaaggcaagtcgtccaggtcctgaggcagcaaaccatccccaaaccatcacaccaccaccatgcttgaccgtttgtataaggttcttactgtggaatgcagtgtttggtttttgcCAGACATAATGGGTATCAGTTGACCTGTGAATGCTGTACAATGAGAGAATTATACTCTTATATTAAAAATCATGATTTATGATACTGTCAAAACTGCTGTATCATGTGATTTGCATTTCTAATTCAGGACTCCAAAATAAAAGCTCACACTCATGAGGTGTCATAACATACATAGATTCTGGAGAAATCCAAGCACTCTCCTTAAAGGGATAATTTACTTTTTTGTTGAAGTTTTCGTTTATTTTCGTGAACTATCCCTTTATCTATCACTTTAATGCTGATGTCAATGTGAGGACTTATTGAATGACCGAGATGAGTTTCATCAAGCTGTTGTTATTACTGGATTATTGGTTATTGTACTGTGCAATGTGCAAATGTTTGATAATAGGGATCTCCAAACAGAGTTCCCATGAAGTGTTTACACATGGAACTATAAAGAAGTGTCTCAGAACTAAGTTATGTGGTACACTATGCATAATGCTCCATCTATTCATACCCAGCTTCCAATTAACTCATTCAACCCTTCTTCCCTGCAActcttccccaggttgttgctgcaaacgagaacctggtaaaataagggtaacatatatatatatttcaaaatgtGCATAGTGTGGACAAATTACTCCAATCTTGGGTTGTATTTGGATGAATGATTGATCATTGCGAAATAAATCCTACCCATTTCCTCAAGCAGAGCATCGTTATGAAAAATAGCTATCCCAATTTCCTGTAACTTGGTTGTGCAACTATTTATGAACTATCTTTATGAGTCACACCGTACCTTATCAGTACTTATCTGTTCATCTTTAGAACCTCCGTAGGAGCATCGTTaaagctgtttcccaaaaccatcattTCCAAACCTGCTCTTAAAAACAATTGTTATTTAATATTTGCCTCAGACCACACTTAGCTGTTCTAAGTGCATCTCCAGAGGCTTTTTTTGCCCTTCTGCGTCACTGTATTCACAGATCTACACTAAAAAACAATCCGTCTTTCTGTGACCGCCGATAACTTCAAAACGAATGTGATTCCTACCATTAAAAGTTTTGAATTTCTTTGTAATCGTTACTAACAAGCGAAGATTATGACGATGCTTCAAATGAGATGACTGTATTA

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561745.2 False 1201 mRNA 0.51 8 38740727 38751229
TU161423 True 2079 lncRNA 0.44 2 38738678 38779271

Neighbor

gene id symbol gene type direction distance location
LOC110489131 LOC106605119 coding downstream 246386 38379192 ~ 38494341 (-)
LOC110489123 LOC106605177 coding downstream 653329 38086165 ~ 38087398 (-)
LOC110489095 LOC106605120 coding downstream 687363 38048897 ~ 38053364 (-)
LOC110489105 LOC106605178 coding downstream 692321 38046700 ~ 38048666 (-)
LOC110501529 NA coding downstream 694288 38035966 ~ 38046439 (-)
LOC110489186 NA coding upstream 101004 38852233 ~ 38854258 (-)
LOC110489192 LOC106605112 coding upstream 107277 38858506 ~ 38892046 (-)
LOC110489249 LOC106605107 coding upstream 201595 38952824 ~ 38963780 (-)
LOC110489261 LOC106605105 coding upstream 224376 38975605 ~ 38983972 (-)
LOC110489287 LOC106605101 coding upstream 446437 39197666 ~ 39209506 (-)
G140227 NA non-coding downstream 71389 38669134 ~ 38669338 (-)
G140197 NA non-coding downstream 98141 38642303 ~ 38642586 (-)
G139784 NA non-coding downstream 392565 38347935 ~ 38348162 (-)
G139767 NA non-coding downstream 400949 38338870 ~ 38339778 (-)
G139698 NA non-coding downstream 458173 38282346 ~ 38282554 (-)
G140453 NA non-coding upstream 22756 38773985 ~ 38774917 (-)
G140466 NA non-coding upstream 38339 38789568 ~ 38790938 (-)
G140468 NA non-coding upstream 55739 38806968 ~ 38819055 (-)
G140470 LOC106605115 non-coding upstream 64329 38815558 ~ 38821894 (-)
G140478 LOC106605114 non-coding upstream 75053 38826282 ~ 38826817 (-)
G139231 NA other downstream 987769 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1276969 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 1891382 36844929 ~ 36849373 (-)
G138080 NA other downstream 1912330 36825792 ~ 36828397 (-)
G140479 NA other upstream 76680 38827909 ~ 38828195 (-)
G140879 NA other upstream 312633 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 1012704 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 1473393 40224622 ~ 40298333 (-)
G142918 NA other upstream 2111985 40863214 ~ 40863721 (-)
G140480 LOC100846954 non-coding upstream 48985 38828256 ~ 38828523 (-)

Expression


Co-expression Network