LOC110489149 (LOC106605176)


Basic Information

Item Value
gene id LOC110489149
gene name LOC106605176
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38757233 ~ 38786447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561766.2
AGgaagaacagagggtagtgacactgggagaaaaggagagcggcgagacggagagagagagaggctctacaCATCATCTGCAGCTGATACAGACAGTTTCATCCTCAGACTTTTGCTCAACACCACACACGGACTGAACTAAGGGCTCCTACTCCCTCCAGAAGACTATGGCCTCAACTgctttttttaaaggcacagGCCTCCTGCTCTTCTTACTACTGGGACTGCAGCCATCGTCATTTATTTCAGGACAAAACACCACCTCAAGTTTCAATTCAACGGCCGATGCTGCATCAACTGTGACGTCACCTGGCATGAGTAATGACTCTGCAGCAACTATCGTGACAGCTACCACAGCTCAAACTACAATGTCGTCTGCCATTTCTTCTACGAATGCTACAATGTCGTctgcagggttggGTAGTGGAACCGCAAGCACGGACAATGCCACTTCATGGGGCACCAGTGGCATGACCATGataTCCTGTCGCCAGTTCTCCTGTAACTACTCAGACTGCAACGATGTGTACATGAATATGACTTCTGTTACATGCAACGCTAATATCACCTTCTGTGAGctgaagagacaggaagacatGACTTACACCGGTGGCTGCAGTTCCTCCTGCAGTAATGCCTGTGTCAATGACACTCAGACCAACTGTTCGATGGGATGCTGCAACTCCACTGGCTGTCTTAGCTCTACCCTGGCCTCCATGGTTCGCACAAACACTACAACAGTGATGATgaccaccaccaccgccacaacaacagcagcagccaccaccactacaactgcTGAACCAACCAATAAACTTAAGAAGTGTCAGATGTTTCAGTGCACAGAGCAGAACTGTTACAAGACTTGGATAACCAAAGACCCAATGCCTTGTCCCCTCAACCAGCCCTACTGTGAGCTGAAAAAGATGACAACTGGTTCAACAACGACCTGGATGGGAGGCTGCAATGCCAACTGCACAAGAAACACCTGGTGTACGACCACAACAGATACATGCCACCAAGAGTGCTGCAACACCTCCATGACCTCCTGCCTCAAGCTGGATGGTACTCTGAACGTTCCTTCTTCTGCCGCTAGGGGTCCGCACTTCCCTTTAGCATTGGTCACTGCTGCTCTGCTGGTTTGTCTGCTCAGCATTGGTTCTCTGGTTTAAACTGGGTCGTGTTCAGTAGGTACCAAGcgggaaaaaaaatattgaaagaGGGAGGAAATTCTTTGACTTGTCCGTTGCAAAATGGTTTAAAACGTTGCCTGTTGTGTGActtaatgaatacaaccctgatgTGTCGACCTACTTGAATAACATACAGCGGTAGTAGTTAGCGCAGCAAAACCTGGTTTCTATTCCACATGAATAGTATACTGGTTGTAGGTCTAGCCTactctgtttttgtttgtttgtttgtttgcttgtatATGAGATGTATTGAGAAACTGTATATGAGGGCTCATATGTGCTTTTGAGAAATGTAGGCAATTTAAGTGATATTAAAGGGTATTATTGAAGAATATGATGATTAATATGGCTACAGAAAGCTACTCGACCATACCATCAACTCATTTATAAATCAGTAATGTGTAAAACATAATCCACAGAAGAGGATAGCTATTCATGATCATAGATGACTGACCTAATGTATGGTAGGGTAATTCATTATCTGCTTTTTGATACTTATTGAGATTTGTGTAAGTTTAAGTTTACAATTGTGACATTTTCATAAATGTCCTCTTTTTTTAGGCACACTGTTATTTTCTTTCGCCAGTGGTTTGCATGATGACTTGCATGTTTTCTTTGATTTTGCACTTGCAAAGACCTTCTAGCCTAGTCTCAGATCTGGTTGTGCTCTTGCTCACTCAATTGCTCATTGACAAACCAAACATGCCcaggacaaggagttggcatgatagcATAAAccgactggcactcaggctaaagGCTTTCTCCAATACAAAAGCAAATATCTGTTCTTTACAGATATTGCATAATAACTCAGTTATTACCTAGTCTTAGATAGCATATTGTGAAGGACAGATTTTTGCacttgtaaaaaaacaacaaaatatatattggGCTATAGAAGgtgtttgaaatatttttgcTGACGCATTGAGGTGTAATTCATATCTGTGAATGTAGTCATACACTGTACAACTGTAATGTGTGTTTTACTCcttttattatttcactgtattctTATTTATAATTCACCATCATAACAATATGGAAATTGATTTATAAAAATTGGTTATGAaattgggttataaaaaatgcCAAAGTGTATATTTTACAGTCGTTTCATGGAAAGTTGACATACAACACCTGATATGTCATATCTAATATTTGGAGAAAAGTTACTAAAAGAAATGTTGGATACTTTCTACATTGTGTATATTGTACAAACCGTAACAACTGATTTTAAAGTCacctaaatataaaataaataaatgtttga

Function

NR:

description
serine-rich adhesin for platelets-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561766.2 True 2472 mRNA 0.41 9 38757233 38786447

Neighbor

gene id symbol gene type direction distance location
LOC110489135 LOC106605117 coding upstream 22835 38718292 ~ 38734398 (+)
sh3d21 LOC106605124 coding upstream 845903 37891951 ~ 37911330 (+)
LOC110489035 LOC106605126 coding upstream 866723 37863201 ~ 37890510 (+)
LOC110501519 LOC106605129 coding upstream 993518 37699215 ~ 37763715 (+)
LOC110489000 LOC106605130 coding upstream 1092940 37628152 ~ 37664293 (+)
LOC110489163 LOC106605115 coding downstream 3089 38789536 ~ 38823441 (+)
LOC110489178 LOC106605114 coding downstream 37138 38823585 ~ 38847695 (+)
LOC110533769 LOC106583263 coding downstream 68735 38855182 ~ 38857226 (+)
LOC118939688 NA coding downstream 70774 38857221 ~ 38858528 (+)
LOC110489224 LOC106605111 coding downstream 112719 38899166 ~ 38916542 (+)
G140271 NA non-coding upstream 49925 38707079 ~ 38707308 (+)
G140264 NA non-coding upstream 57488 38699431 ~ 38699745 (+)
G140214 NA non-coding upstream 97021 38659946 ~ 38660212 (+)
G140212 NA non-coding upstream 97613 38659379 ~ 38659620 (+)
G140205 NA non-coding upstream 105030 38651958 ~ 38652203 (+)
G140318 NA non-coding downstream 64460 38850907 ~ 38852062 (+)
LOC110489269 LOC106605108 non-coding downstream 75060 38861507 ~ 38973957 (+)
G140363 LOC106605107 non-coding downstream 166388 38952835 ~ 38963883 (+)
G140325 NA non-coding downstream 187625 38974072 ~ 38974620 (+)
G139179 NA other upstream 705489 38051359 ~ 38051744 (+)
G139101 NA other upstream 813221 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 816519 37919735 ~ 37940714 (+)
G139004 NA other upstream 933223 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 2355262 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2752848 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 3181927 41968374 ~ 41969317 (+)
G144661 NA other downstream 3723883 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4944425 43730872 ~ 43731218 (+)
G146091 NA other downstream 4982260 43768707 ~ 43769162 (+)

Expression


Co-expression Network