LOC110489178 (LOC106605114)


Basic Information

Item Value
gene id LOC110489178
gene name LOC106605114
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38823585 ~ 38847695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561795.2
TCCCAGAATACAACACGAGGGGTAGGGTGAAATATGACGTTTCTATTTAATCATGGTATCACTAGGGAGGGGATGGGAAGAAAGTGCTAAGCTACCCGAAACATAAACCAAGTCGGCATTTGCGCTGCACGGGAACAAGTGAGCACACCGTCCTCTGCGCACACTCACCCACCAGAGGCGGCCAGCCCAGCCGGGACCATGAGCGAGCGTGGCCCTCGCACGGAGGCCTCTGTGTTTTTGGAGGTGGACCGCCTCGAGCGCGATAACAACGATGAAGACAAGATGGCGCACTACGATGACGACAAAGACGACGCCGACCTGATGTCGGCACCCTCGGGCTCACGCGTCTACGACCGCACTACGGTGCTCATCGAGCAGGACCCCATCCGGCTGgacgaggagggagaggaggaccatGGACACTGCGTGGGGGATGACGACGGGGGCACTTTCCTAGTCGACGGGGAcctggacgaggaggaggaggaggaggagggctctatGACCTTCATGGGCGACCAGGATGGCATGTCGCAGGGGTACGTGCATCACACCATCTCGCCCGACCAGATCCAGTTCATCATCAACCCGGGGTCCATGGCCATGCCGCGCAACATCGAGGGGGCCACCCTCACTCTGCACTCCGAGTGTCCAGAAACCAAGCAAAGGGAGGTGAAGAGGTACCAGTGCATGTTTGAGGGATGCACACGGACCTACAGCACGGCAGGCAACCTGCGCACGCACCAGAAGACCCACCGGGGCGAGTACACATTTGTGTGCAACCAGTTGGGCTGCGGCAAGGCCTTCCTCACTTCCTACAGCCTGAAGATCCACGTGCGCGTTCACACCAAGGAGAAGCCCTTTGAGTGCGACGTGCAGGGCTGCGAGAAGGCCTTCAACACCCTGTACAGACTGAAAGCACACCAGAGACTGCACACGGGGAAGACGTTCAACTGTGAATCGGAGGGATGCACAAAGTACTTTACCACACTCAGTGACCTGAGGAAGCACATTCGCACTCACACTGGGGAGAAACCATTCCGGTGTGACCATGATGGTTGTGGCAAGGCGTTTGCTGCCAGCCATCACCTAAAGACGCATGTACGGACACACACAGgggagaagcctttcaaCTGTCCCAGCGACGGCTGTGAGAAAGCATTCAGCAGCCAGTACAGTTTGAAGAGTCACGTCAGGGGCCATGGGGCTAAGGGCCAGCCCTTCAGTGTCACCCTCACCCACCCCTTGTCTGAGGATGCAAATCATTCACTGTGCCTCAGTGACTTGAGCCTCATCTCGACTGACTCGGAGCTCAGAGAAAACATCCACAATTCTCAGAACTTGGACTTGAGCAGTGTTACCCCCGTGAGGATCTTCGAGCTCATGTTCCAGAGTCCGGAGAACAGTGTTAGTCAAGACGATGCACATCCTCACGaGAGCCTTGTTGAAGCCTTTGGCCAGGAGACTGGCCAGTCCACCATGGGCGATGGCTCCACCCCCATCTCCTTCTCGTTCTCCCTTGtcccttcctcctcatcctcctgttCCCACtcccactctcacactcactcccacaccaccaccaccactgtccTGGAGGCTTCCTCCCAGCTTCCTCTAAGCCAAACCCCCTCTTCCCAGGTTCCAGCACCTCCTGCCCCCATTAGTAATATTACCACAGTCAGCTCCACCCAGCCCCACGCCACCTTCGTACCCTTACCCACTGCCCTGCAGACGCCAGATGTGCCTGCCCCCTATGTGGCACTGCCCGCCCAGACTGCTCCAGTAGTGCCCTCTATTGCGCCAGTAGTGGTGCCAAGCCCAGCCCTCGCGGCTCTGGGCGCTGTAGTCGCCACCACAGAGACTGTGCCGCTGCCGGCCGTGGCTCACACTCACACCGTGCCTTTGGCCAGCAACACCAACCCTGCCCTGGTGCCCCCAGCCTCTGCCCCCACTTTCACCCCAAGCCACAGCCACACCCAGAGCCTGTTGCAGCCCAGCATTGTCATGTCTGACCAGAACCTGCAGTGGATCCTTAACACCGCAGCCAACAACCAGCAGAACCCAGAGCAAGCTCCACACGGAGGTCCAAAAGTAGAGAAGGTCTTCTTTACCACAGCCATACCAGTGGGAGGAAATTCAGGCAACTCTGTCCAGCAGATCGGCCTTAGCCTTCCCGTCATCATCATCAAACAAGAGGAGTCCTGCCAGTGCCAGTGTGTCTGCAGGGACTCTTCTAAAGACAAGAGCTCCAACAAGAGCAGCAACGCCTCGGCAGCACCACAACAACAGCCCACAGTGCccgccactcctccacctccccccacTCCCGtggcactgccctttcccaccgtACTCCCCCCGGCACCCTCTTTCCCCTTGTGCTGCCTCCCACCGCTCACCTCGGAAGTGAACGAGTCCCCGCCTCTTCCCCAAACAGGTGCAGTGCTAGGACCGGGTAGCCCCTCGACCTCTGTTCAGACGTTCTCCACAGGGGTGGCCACGGCGACCACCAACCCCCCTCCTATCACAGATGGTTTGGCCACCATGGACGTGTTGGACTTCCTGTCCCTGCAGAGCCCCAAGAGCACGGCCAACATCGAGGCTCTGCTACTGGTGACCAGCAGTGACGACTTCACTATGGCTGGCGCTAGCACCACCATCCACCCCTAGTGGACACTCAGGCTTTGTCCCtattctccacccttctcttgCATACTCCCAGTCATGGATTTAACAGCATTGAGTTGGTGTAAGCGTTGGGCagagggagtttctaccattgTTAAATTAAAGGGAGTGTGCAAATGCACACTTTAGGAGAAGGATGTAGAATCAGGACGCAGCTGCACTTTCTGATTTACCCACTACACGTCCGCTTTTCAAGTATTGTAAGTGAAACTTAATGAGGGGGCTTGTTTTGGAAAAGCTGCAAAATGCATGCCAGTCAAGAAAAGTGTTCTTAATTGGCTGGCTCTCCATCAAACAAGACACAGTCTTGAAAGGCCCTAAGAACTATTGTCTGCATCTAATATGGCGCGAAGCTGATTCCTGAGAGAAGCAAAACAAAACATTGTTGTCTATATCCATGTACTGTACATTAGTTCCTAACTGTAACTAATACGATTAGTTGGTAAGTGATTGACCAGAATGCACTGCATGTGAAGTGAATTGGAATTTCATCAACTATATTTCCTACAAGGAATTTGTGGCAGTTTTGCCATTCCCTTAAAAGCAATGTATTGCTAATGCCATAATGTGAAGAGTAATTTCCAGTGTTTTACATAAATTAGCTAGTGTAGTCCagatt
>TU161308
TTCTTAATTGGCTGGCTCTCCATCAAACAAGACACAGTCTTGAAAGGCCCTAAGAACTATTGTCTGCATCTAATATGGCGCGAAGCTGATTCCTGAGAGAAGCAAAACAAAACATTGTTGTCTATATCCATGTACTGTACATTAGTTCCTAACTGTAACTAATACGATTAGTTGGTAAGTGATTGACCAGAATGCACTGCATGTGAAGTGAATTGGAATTTCATCAACTATATTTCCTACAAGGAATTTGTGGCAGTTTTGCCATTCCCTTAAAAGCAATGTATTGCTAATGCCATAATGTGAAGAGTAATTTCCAGTGTTTTACATAAATTAGCTAGTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561795.2 False 3310 mRNA 0.55 11 38823585 38847695
TU161308 True 342 lncRNA 0.37 1 38847345 38847686

Neighbor

gene id symbol gene type direction distance location
LOC110489163 LOC106605115 coding upstream 144 38789536 ~ 38823441 (+)
LOC110489149 LOC106605176 coding upstream 37138 38757233 ~ 38786447 (+)
LOC110489135 LOC106605117 coding upstream 89187 38718292 ~ 38734398 (+)
sh3d21 LOC106605124 coding upstream 912255 37891951 ~ 37911330 (+)
LOC110489035 LOC106605126 coding upstream 933075 37863201 ~ 37890510 (+)
LOC110533769 LOC106583263 coding downstream 7487 38855182 ~ 38857226 (+)
LOC118939688 NA coding downstream 9526 38857221 ~ 38858528 (+)
LOC110489224 LOC106605111 coding downstream 51471 38899166 ~ 38916542 (+)
LOC110489198 mecr coding downstream 80543 38928238 ~ 38936143 (+)
LOC110489231 LOC106605109 coding downstream 94527 38942222 ~ 38952111 (+)
G140271 NA non-coding upstream 116277 38707079 ~ 38707308 (+)
G140264 NA non-coding upstream 123840 38699431 ~ 38699745 (+)
G140214 NA non-coding upstream 163373 38659946 ~ 38660212 (+)
G140212 NA non-coding upstream 163965 38659379 ~ 38659620 (+)
G140205 NA non-coding upstream 171382 38651958 ~ 38652203 (+)
G140318 NA non-coding downstream 3212 38850907 ~ 38852062 (+)
LOC110489269 LOC106605108 non-coding downstream 13812 38861507 ~ 38973957 (+)
G140363 LOC106605107 non-coding downstream 105140 38952835 ~ 38963883 (+)
G140325 NA non-coding downstream 126377 38974072 ~ 38974620 (+)
G140409 NA non-coding downstream 145308 38993003 ~ 38993230 (+)
G139179 NA other upstream 771841 38051359 ~ 38051744 (+)
G139101 NA other upstream 879573 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 882871 37919735 ~ 37940714 (+)
G139004 NA other upstream 999575 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 2421614 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2691600 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 3120679 41968374 ~ 41969317 (+)
G144661 NA other downstream 3662635 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4883177 43730872 ~ 43731218 (+)
G146091 NA other downstream 4921012 43768707 ~ 43769162 (+)

Expression


Co-expression Network