LOC110489192 (LOC106605112)


Basic Information

Item Value
gene id LOC110489192
gene name LOC106605112
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38858506 ~ 38892046 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561815.2
AGCAGCCATCGCTGATGGTGAATACCATGGACAGCGACCACGGAGTGTGCACGTCCAGGATCTTGTTGCATTGGATTTAGAACGTTTTCGTTGCTGTCCCCACGTGGGTTTACTTGCCAGCCTAATGTAAAGCATTGTGTAGGAGATATATCGAGCCAGCAGCGAAAAGCGAAATAGCGTAGCAGCGAAAAGCGAAATAGTGTAACAGGGTGACGGCAATTAAGCCATCAGGAGCCAACATCTGACTAGCCTATAGACGATAGAAAGATATCAGCGAGATTTGATCACTTGACATGGAGACTATTCTTAACTCGAAATGTGCACATTTTCTCCAAGAGCTCATATAATCAGATGGTGGTATAGCCTTCATCATTGCAATTGGGGAACACTAATACAAAATGTGTCATGCATCCTTATTTCACAATCTCCACTACAACAAGGTAAAGTGCGCTCCTTAAGACATCGATATTCTGTTAACTGATTGAATTGAACAAGTTAACTCCGCATGTTAACCTGATAAAGGGCCAAATAATTTCACATCACTGAGATCTAAATGCAATGACAGATTCCACTGCGTCATGCAACGCGACCATTAGGCTTCATCCGCAATCATGTAGGCTAATAGTTAGGCTATTAATCATAAAGTTGTACATTTTCAGCGTTCCGACAGCGACTGCATTTATGAATACTCTATATGAAGGCCTGCATTGTATACTTTCCTAGAGTGTAGTAGGTGAACTTGTAAGATAGGCTAACTGTTATAGTATACTGCCTATAGGCTATACGACGTTTGGAGAAAAGCACGTTTTATTCACACCGCTGACTTCAGCCGAACACGAACCCCGGTTCACTCCAGCAGGAATCGCCTCTACGAGACAATCTATCCACAATGGCCAGGCTGCGGAAGAAACCGTGCATAGCTCTGTTCTTATTTACACTCTTCGTTTTCGGAACCATGATGGGTTTGAGAACTCTGAAGCCCAGCGATGGGTTCTCGGACCTGGCCCCGGGGTTGGGCCTCCTGCCGATGATTGGAGGAAGGATGGACCGGCGCTCGGTGTCCCAAGACTCCGTCTCCTCCCCGGGGCAGGTACGCGCCAAAGTAGATTTATCAAACTCTGGACCTGAAGGAACCATATTTTACGACGTCCACATATTTTACAGCGTGTGGTACGGGAACCCGTCGATGGATGGGAAATACATGCACTGGGACCATGTCCTCGTGCCACATTGGGACCCCAAAATCGCCGCCAGTTACCCTAAAGGGAGGCATATGCCACCGGAGGACATCGGCTCCAGTTTCTACCCTGAGCTCGGTCCGTACAGCTCGAGAGATCCGGATCTATTGGAGTCACACATGGAGCAGATTGGAGCGGCTGCTGCAGGGGTACTGGTGCTGTCCTGGTATCCTCCGGGCCTGGCCGATGACAACGGGGAGCCCACAGAGGACCTGGTGCCGGCCGTCCTAGACGCTGCTCACAGACACAACCTCAAGGTTGCATTTCACCTCCAGCCTTACAGAGGGAGGAGCGACCACAGTGTCCATGACAACATCAAGTATATCATCGACAGGTACGGGGACCACGGAGCCTTCTACAAGTTCACCTCTAGCACGGGGAATATCCTGCCTCTGTTCTACATTTATGACTCGTATCTGACGCCGCCCGAGAACTGGTCCGACCTGCTCCACCCCACGGGCTCCCACAGCCTGCGTGGCACGCCGTACGACAGTGTCTTCATCGCCCTCATCGTGGAGGAGCGCCACAAGCATGATATTCTTGCCGGTGGTTTCGATGGCATGTACACGTACTTCGCCTCCAACGGGTTCTCTTTTGGTTCATCCCACCAGAACTGGAAGGCGGTCAAGGCGTTCTGTGACGGTAACAACCTGTTATTTATACCTAGCGCCGGGCCGGGCTACATCGACACCGCAGTCAGACCGTGGAACAACCACAACACGCGCAACCGAGTCAACGGCCGCTACTACGAGACAGCCTTACAGGCGGCGCTGAACGTGCGGCCCGAGATCGTCACGATAACGTCGTTCAACGAGTGGCACGAGGGCACGCAGATCGAGATGGCTGTGCCAAAAAAGACGGTGACCAGGTTGTATTTGGATTACCAGCCGCACCAACCTGAGCACTACCTGGAGCTCACCAGGAGGTGGGCAGAGCAGTTCAACAAGGAGAAAGAGACATGGCTCATGTGaactggcactgtgtgtgtgaaagagagagaaaaagcacgAGTGACTGTAGAGGTTTATGAATGTGTGAGAGACAAGTGCGTGGGAATTGgactggagagagaaaaaaaagagagaaatgctcattttaacttttttttttttggggggggggcaaaatT

Function

NR:

description
glycoprotein endo-alpha-1,2-mannosidase-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561815.2 True 2367 mRNA 0.50 4 38858506 38892046

Neighbor

gene id symbol gene type direction distance location
LOC110489186 NA coding downstream 4248 38852233 ~ 38854258 (-)
LOC110489143 LOC106605116 coding downstream 107277 38738678 ~ 38779271 (-)
LOC110489131 LOC106605119 coding downstream 364165 38379192 ~ 38494341 (-)
LOC110489123 LOC106605177 coding downstream 771108 38086165 ~ 38087398 (-)
LOC110489095 LOC106605120 coding downstream 805142 38048897 ~ 38053364 (-)
LOC110489249 LOC106605107 coding upstream 60778 38952824 ~ 38963780 (-)
LOC110489261 LOC106605105 coding upstream 83559 38975605 ~ 38983972 (-)
LOC110489287 LOC106605101 coding upstream 305620 39197666 ~ 39209506 (-)
LOC118939935 LOC106605099 coding upstream 326505 39218551 ~ 39220640 (-)
LOC110489325 tpi1b coding upstream 336766 39228812 ~ 39233769 (-)
G140498 NA non-coding downstream 1486 38856703 ~ 38857020 (-)
G140496 NA non-coding downstream 2398 38855888 ~ 38856108 (-)
G140456 NA non-coding downstream 10772 38847225 ~ 38847734 (-)
G140493 NA non-coding downstream 13625 38844660 ~ 38844881 (-)
G140491 NA non-coding downstream 14868 38843423 ~ 38843638 (-)
G140560 mecr non-coding upstream 41804 38933850 ~ 38934228 (-)
G140506 ppp1r8 non-coding upstream 78583 38970629 ~ 38989073 (-)
G140846 LOC106605103 non-coding upstream 109320 39001366 ~ 39002616 (-)
G140857 NA non-coding upstream 127216 39019262 ~ 39019499 (-)
G140862 NA non-coding upstream 135521 39027567 ~ 39027804 (-)
G140479 NA other downstream 30311 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 809840 38046700 ~ 38048666 (-)
G139231 NA other downstream 1105548 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1394748 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 2009161 36844929 ~ 36849373 (-)
G140879 NA other upstream 171816 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 871887 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 1332576 40224622 ~ 40298333 (-)
G142918 NA other upstream 1971168 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 2822500 41714269 ~ 41730507 (-)

Expression


Co-expression Network