LOC110489231 (LOC106605109)


Basic Information

Item Value
gene id LOC110489231
gene name LOC106605109
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38942222 ~ 38952111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561873.2
atgagatgtcatgcgagcaggtgtctacataccCATGTAGTGTATCTCTGGGTAAACTAGTGCGTCTAGCAATCTCGCATGTTCATTGGTTTTAGCTACCAAATCTAGTCAGAATCTCATTGGACAATGGATTTCGCGGCATTTCTGTAGGGCGCATGCGTTCTATACTGTCAACTTTCCAGCGCGCGGAATTGTTCAGGAAGGGGAATAGTTGTGAATACTTTTTACACGTTTTATTGTCTTGCCACCTGTTTAAACATTATTTTATCATATAACGTAAGGTAACGGCACCATGTGGAACCAAGGTGGATCATACGGTGAATCAAACATGGGTGGTGGATACACTCAGTCTCCGGGAGGATTCGCATCACCTGCTGCCTCccagggaggagagaagaaagggAGACAACGTGCCCAACATATTGTCCCCTGCACAGTGTCCCAGCTCATGTCTGCTGCCCAAGCAGAGGATGTCTTcagagtgggagagatagaggtTGCCCAGGTTACCATTGTGGgcatcatcagaaccactgacAAATCCATGACCAACATCCAGTACAAAGTCGATGACATGACAGGGGCCCCTATGGACGTGAAGCAGTGGGTAGATACGGAGGATCCCAGTGTGGACAGCACTGTCATCCCCCCAGGCACTTACGTCAAGGTCTCTGGCAATTTGCGCTCCTTCCAGGTGACGTCATCATCCCCACACAACTACATACCTTTATCTAACCACAGGTCCATGGTAGCATTCAGCGTCCGGCCCCTTGACGACATGAACGAGATCACCTCCCACATGCTGGAGGTGGTGCAGGCACACGTGCTGCTCAGCAAACCACAGACGATTATGATGGGCGGAGGAGGGGGAATGAACACTAGCATGGTGCCCTTGTCGCGGCCGGGAGTGGGTGGCAACATGGGAGGTGGATACTCGGGTGCCAACGACATGTCCGCTAACGGCCTGAGCCCAAGCCAGAACCAGgtGCTGAGCTTGATAAGGAGCTGTCCAGACGCGCAGGGTATCAGCACACAGGACTTGAAGCAGAGACTCAGCGGCATGAGCTTGGCTGTCATCAAGCATGCAGTGGAGTTCCTCAGCAACGAAGGACACATCTTCTCCACCATCGACGAGGATCATTTCAAGTCTACAGACAATGACGACTAAAGCATCTCTCCATTCCCTGTTAGCGCTAAGAACATGATCATAGTCTTGGGTCCATTCTCAACACACTGTGGGCTATGAGCGGACGATTGTATTTAAGAATAACACCCAAAGTCCTCTTAGAATTTTAAGATCTCAACACTGAAAATAGAACCTGTAGTCATTCATGGAAGCATGATTCATACTGAGGATCATCATGGGATGTCTATATAATCCTGAGGGTTTCTGCGAAATTAGGCCTTGGTTTGACTGACATGGTGGCCAGTGTTCACATATCCTGTTTCAACTTCCGTTAATGATATTACAGTAAGAGTGGGCGCATCATAGGCCAATGGTTTTTCTCACAATGAATGCAATCTGTGACTACCAGTTCCTCAATCATTGGTCTTGGTAGTTGTTGTTTAAAAATAGTGAACAGAATGCAAAACTTTGCCATTCAGATTCTTATGTctctatgttttgtttttgtctctAGTAAACATATATTTTCAGAAAAA
>XM_021561880.2
ggtgtctacataccCATGTAGTGTATCTCTGGGTAAACTAGTGCGTCTAGCAATCTCGCATGTTCATTGGTTTTAGCTACCAAATCTAGTCAGAATCTCATTGGACAATGGATTTCGCGGCATTTCTGTAGGGCGCATGCGTTCTATACTGTCAACTTTCCAGCGCGCGGAATTGTTCAGGAAGGGGAATAGTTGTGAATACTTTTTACACGTTTTATTGTCTTGCCACCTGTTTAAACATTATTTTATCATATAACGTAAGGTAACGGCACCATGTGGAACCAAGGTGGATCATACGGTGAATCAAACATGGGTGGTGGATACACTCAGTCTCCGGGAGGATTCGCATCACCTGCTGCCTCccagggaggagagaagaaagggAGACAACGTGCCCAACATATTGTCCCCTGCACAGTGTCCCAGCTCATGTCTGCTGCCCAAGCAGAGGATGTCTTcagagtgggagagatagaggtTGCCCAGGTTACCATTGTGGgcatcatcagaaccactgacAAATCCATGACCAACATCCAGTACAAAGTCGATGACATGACAGGGGCCCCTATGGACGTGAAGCAGTGGGTAGATACGGAGGATCCCAGTGTGGACAGCACTGTCATCCCCCCAGGCACTTACGTCAAGGTCTCTGGCAATTTGCGCTCCTTCCAGAACCACAGGTCCATGGTAGCATTCAGCGTCCGGCCCCTTGACGACATGAACGAGATCACCTCCCACATGCTGGAGGTGGTGCAGGCACACGTGCTGCTCAGCAAACCACAGACGATTATGATGGGCGGAGGAGGGGGAATGAACACTAGCATGGTGCCCTTGTCGCGGCCGGGAGTGGGTGGCAACATGGGAGGTGGATACTCGGGTGCCAACGACATGTCCGCTAACGGCCTGAGCCCAAGCCAGAACCAGgtGCTGAGCTTGATAAGGAGCTGTCCAGACGCGCAGGGTATCAGCACACAGGACTTGAAGCAGAGACTCAGCGGCATGAGCTTGGCTGTCATCAAGCATGCAGTGGAGTTCCTCAGCAACGAAGGACACATCTTCTCCACCATCGACGAGGATCATTTCAAGTCTACAGACAATGACGACTAAAGCATCTCTCCATTCCCTGTTAGCGCTAAGAACATGATCATAGTCTTGGGTCCATTCTCAACACACTGTGGGCTATGAGCGGACGATTGTATTTAAGAATAACACCCAAAGTCCTCTTAGAATTTTAAGATCTCAACACTGAAAATAGAACCTGTAGTCATTCATGGAAGCATGATTCATACTGAGGATCATCATGGGATGTCTATATAATCCTGAGGGTTTCTGCGAAATTAGGCCTTGGTTTGACTGACATGGTGGCCAGTGTTCACATATCCTGTTTCAACTTCCGTTAATGATATTACAGTAAGAGTGGGCGCATCATAGGCCAATGGTTTTTCTCACAATGAATGCAATCTGTGACTACCAGTTCCTCAATCATTGGTCTTGGTAGTTGTTGTTTAAAAATAGTGAACAGAATGCAAAACTTTGCCATTCAGATTCTTATGTctctatgttttgtttttgtctctAGTAAACATATATTTTCAG

Function

NR:

description
replication protein A 32 kDa subunit-like isoform X2

GO: NA

KEGG:

id description
K10739 RFA2, RPA2; replication factor A2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561873.2 False 1662 mRNA 0.48 9 38942222 38952111
XM_021561880.2 True 1599 mRNA 0.48 9 38942241 38952106

Neighbor

gene id symbol gene type direction distance location
LOC110489198 mecr coding upstream 6079 38928238 ~ 38936143 (+)
LOC110489224 LOC106605111 coding upstream 25680 38899166 ~ 38916542 (+)
LOC118939688 NA coding upstream 83694 38857221 ~ 38858528 (+)
LOC110533769 LOC106583263 coding upstream 84996 38855182 ~ 38857226 (+)
LOC110489178 LOC106605114 coding upstream 94527 38823585 ~ 38847695 (+)
LOC110489269 LOC106605108 coding downstream 12443 38861507 ~ 38973957 (+)
LOC118944175 NA coding downstream 13237 38965348 ~ 38965501 (+)
LOC110489273 LOC106605104 coding downstream 34958 38987069 ~ 38990470 (+)
LOC110489280 LOC106605103 coding downstream 48610 39000721 ~ 39044657 (+)
atp1a3 atp1a3 coding downstream 218162 39170273 ~ 39195284 (+)
G140318 NA non-coding upstream 90160 38850907 ~ 38852062 (+)
G140271 NA non-coding upstream 234914 38707079 ~ 38707308 (+)
G140264 NA non-coding upstream 242477 38699431 ~ 38699745 (+)
G140214 NA non-coding upstream 282010 38659946 ~ 38660212 (+)
G140363 LOC106605107 non-coding downstream 724 38952835 ~ 38963883 (+)
G140325 NA non-coding downstream 21961 38974072 ~ 38974620 (+)
G140409 NA non-coding downstream 40892 38993003 ~ 38993230 (+)
G140595 NA non-coding downstream 54737 39006848 ~ 39007112 (+)
G140598 NA non-coding downstream 62762 39014873 ~ 39015078 (+)
G139179 NA other upstream 890478 38051359 ~ 38051744 (+)
G139101 NA other upstream 998210 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1001508 37919735 ~ 37940714 (+)
G139004 NA other upstream 1118212 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 2540251 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2587184 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 3016263 41968374 ~ 41969317 (+)
G144661 NA other downstream 3558219 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4778761 43730872 ~ 43731218 (+)
G146091 NA other downstream 4816596 43768707 ~ 43769162 (+)

Expression


Co-expression Network