LOC110489249 (LOC106605107)



Basic Information


Item Value
gene id LOC110489249
gene name LOC106605107
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38952824 ~ 38963780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021561909.2
GACGAAGCCCaaaagaaacagacacacacaacacagcgcTATAAACAAAGAGCGAGGTgtaaacctctaataaatacactggacgagacccgtaatacaaatacacgggacgagaccggTATTAACAAATGCATACTAACACCGTAACGCGCAAGCCGACACAACTGAGCACATgtactcacaagaccaacggacatggaACAATAATCAACAAGGACAATgaggaacagagggcacatatatacacatactaatcagagggaattggaaccaggtgtgcataatgagacaagacagtccggggttggtggTAATGATCCAGCTCAGTGAGACGGAGCTGGTGAactgaatgagcagcagtaccggagGAATCCGTGacacGCTCTGTTTATGAGCTGTCGGGAAGCGAGGTGTGCCTGTCCACGGGGGACCTGTTGAAGGTCATCGACATCGAGCTCCTGTCTGTCAGCTGTGAGGACACCAGCAACAATGATAAGTTTGAGCTGCCCATCAACCATGCAGATCTGTTCAAGCTGGTTCCAGAGGAGATGCCATACAGCACAGTGGAGGAGATGGTGAGTCTGAGGCCTGTAGGCCTGGACACCTGCTTTCCCTTCACCTTCACCAGCCGATGTGAGCTGACCTTACAGAATTTCACGCTCGGTGCCGGGATGGCCGTGACCATGCTACACATCGAGCAGCAGGACGGGGGTGAGGAGAGCTGCGTCCGCTGTCAACTCAGAGGCCAGCAGGGGGCTTCGGCTGACGTGCTAATCCCCTACTCCTGCCGTGGGGAGTTCTATGAGTGTGAGAGTGACCAGACCTACACCCTCCAGGAGATCATGTCCTCGCCCCACCTCTGCAGCCGGCACTTTTGCTTCAGCAAGAAGACCAAGCACGGGGCATCGCTATTCTTCAGCCCCATATACCAGGTCCAGGCCATCATGCACTTGAGGAAGAACATAGTCAAGTTCCCCTCCAGCTTGGAGGTGGATGTGGTCGACGTGACGACGGAATCCCAAGACTTGACATTTGTGACCCCGCTCACTCTGCTCGAGGTCTTTGCACAGCCAGACGAGGCCTTCCCCACAATGGCTGAAATACTGGAGCACCATGAGGGCCAGCCTCTGTTCCGTTGTACCTGGCTGGCTGAGCTACACAAGGGCCATCCTCTAGTCCTTCACAAGCGTGGTTCCTCAGCCATGGTTCTGGCTTCGGGTCTCAAGGGGCGCAAGGCCCGCCAGTACTTCCTAATGTCGCAGAGCTACGGGGGACGGCTGCGACGGAGGCCGCGGGAGTTCGAGTCGGTGTACGAGCTGTACGCCGCCTCGACCCAAGCGCCGTTACTCACGGTCAGGGTGACGCGGCACagtgaggagctggaggaggaggggcTTCTGGCACTCAGTGTGGGCGAGCAGCTGGAGGTGCTGCGCTGCGAGAAGGTGAAGCTGCCCGGAGGAGGAACCAGCCAGGAGGAGAAGAATAACCAGACCGTGGAGGTCCTTGTATGTAGACGTCTTCAAGAAGTGGACgatgacgaggaggaggatgaagaggagaaggaggagagtgaGGTGGTCCATTTGCCCATGTACATGCAGAGCCACTTTGTGGAGAAGCTCACGGACAATAAGAAGTACAGCCTGAAGGACTTGTGCAAGGCCTTTGCTCTGCCACTGGACGTTAAGGTGGTGAGCGGTGACGCAGAGCTGGAGAAAGATCCTCTGGTGGGGTTCTCATCCCTGAGGCTGCAGGAGGCTACTATACAGCCCATGGTCCAGGCCAGCCTTCCAGGAAAGCCAGAGAGGTGCTTTGAGATACCCACAGACTGGCTTAACATGTCTTTGTCTTTTACTAACGACCCCTTGCCTTTGACCCAAGAATATCACCTGGAGACAGTTACAGAGGTGACAGACTCATTCTATTACGAATTTCGAAAGCTCACCGCATCAGATGAGCCCCCACCACCACGTCCACCAAAGCCGAAGCCATCATCAAGATCAAATCCACCGTCAGCCTCAAAACCATTGTCAGGCTCAAAGCCATTGTCAGGCTCAAAGTCTTTCAAGGCAACCCCTTCACCCTCACACCCAGATGCCCCCTGTCTTCCACCCAAAAGCGGCACCCTTTCCCTGTTGAGTGATCTAAGTCTTGATAGCAAAAAGGCTCAAAGGCCCCCTGCTCCTCTGCCTCCGGATTTCAAGGATGATGCTCTTCCGCTGAATCCAAGAAAACCTATGACCGATGTCAAGTCAGGCAAGGCTCAGCCAAACACTTACATCAAGTCTAAAAGTCACAAGCCCAACAATAAAGCAGCGGCGAAATATGAAGTTCAAGCAGATGAGGACAGTGACCATGATTATGAGCAAGTGGACGACAAGTTGAGAAGAGCACAGgaccattttttattttactgaacCAGCGAGGTTGAGGAATAACTATTAAAAGGCTAACTAAAGTCTCATTGCATAAAATAGACTAGACTATATAGGGTGCAAGACAATGTCAGAACTACGCACTGATAGCCAGCCACTGTAACTGTGAATACTTTGAGATGGGACTGTGCAAAACAGGATACATGTCTTATTGTACACATATTTTGTTACTTGGTTTTCATTTTCTACATTGCTACAGTCACAAGTCACACTTGCCAACCGATTATCCCAAATGCTTATCATAATAAAAGCctattggtgtt
>XM_021561900.2
TGATTGTTAGATCAGTGGCACCTCTCTTGGAACCACAGTTGAGCCTTGACAGCACAACATCGAGGCAGCACTGCAGTGATGGCAGGCACTGAAACAGTTATGTCCCTGCAAGAATTAATTGCATCCTTGGATAAAACATGTCTGCCACGGATTCTGCAGGTTTGCTCTGGGGTATACTTTCAAGGCTCTGTTTATGAGCTGTCGGGAAGCGAGGTGTGCCTGTCCACGGGGGACCTGTTGAAGGTCATCGACATCGAGCTCCTGTCTGTCAGCTGTGAGGACACCAGCAACAATGATAAGTTTGAGCTGCCCATCAACCATGCAGATCTGTTCAAGCTGGTTCCAGAGGAGATGCCATACAGCACAGTGGAGGAGATGGTGAGTCTGAGGCCTGTAGGCCTGGACACCTGCTTTCCCTTCACCTTCACCAGCCGATGTGAGCTGACCTTACAGAATTTCACGCTCGGTGCCGGGATGGCCGTGACCATGCTACACATCGAGCAGCAGGACGGGGGTGAGGAGAGCTGCGTCCGCTGTCAACTCAGAGGCCAGCAGGGGGCTTCGGCTGACGTGCTAATCCCCTACTCCTGCCGTGGGGAGTTCTATGAGTGTGAGAGTGACCAGACCTACACCCTCCAGGAGATCATGTCCTCGCCCCACCTCTGCAGCCGGCACTTTTGCTTCAGCAAGAAGACCAAGCACGGGGCATCGCTATTCTTCAGCCCCATATACCAGGTCCAGGCCATCATGCACTTGAGGAAGAACATAGTCAAGTTCCCCTCCAGCTTGGAGGTGGATGTGGTCGACGTGACGACGGAATCCCAAGACTTGACATTTGTGACCCCGCTCACTCTGCTCGAGGTCTTTGCACAGCCAGACGAGGCCTTCCCCACAATGGCTGAAATACTGGAGCACCATGAGGGCCAGCCTCTGTTCCGTTGTACCTGGCTGGCTGAGCTACACAAGGGCCATCCTCTAGTCCTTCACAAGCGTGGTTCCTCAGCCATGGTTCTGGCTTCGGGTCTCAAGGGGCGCAAGGCCCGCCAGTACTTCCTAATGTCGCAGAGCTACGGGGGACGGCTGCGACGGAGGCCGCGGGAGTTCGAGTCGGTGTACGAGCTGTACGCCGCCTCGACCCAAGCGCCGTTACTCACGGTCAGGGTGACGCGGCACagtgaggagctggaggaggaggggcTTCTGGCACTCAGTGTGGGCGAGCAGCTGGAGGTGCTGCGCTGCGAGAAGGTGAAGCTGCCCGGAGGAGGAACCAGCCAGGAGGAGAAGAATAACCAGACCGTGGAGGTCCTTGTATGTAGACGTCTTCAAGAAGTGGACgatgacgaggaggaggatgaagaggagaaggaggagagtgaGGTGGTCCATTTGCCCATGTACATGCAGAGCCACTTTGTGGAGAAGCTCACGGACAATAAGAAGTACAGCCTGAAGGACTTGTGCAAGGCCTTTGCTCTGCCACTGGACGTTAAGGTGGTGAGCGGTGACGCAGAGCTGGAGAAAGATCCTCTGGTGGGGTTCTCATCCCTGAGGCTGCAGGAGGCTACTATACAGCCCATGGTCCAGGCCAGCCTTCCAGGAAAGCCAGAGAGGTGCTTTGAGATACCCACAGACTGGCTTAACATGTCTTTGTCTTTTACTAACGACCCCTTGCCTTTGACCCAAGAATATCACCTGGAGACAGTTACAGAGGTGACAGACTCATTCTATTACGAATTTCGAAAGCTCACCGCATCAGATGAGCCCCCACCACCACGTCCACCAAAGCCGAAGCCATCATCAAGATCAAATCCACCGTCAGCCTCAAAACCATTGTCAGGCTCAAAGCCATTGTCAGGCTCAAAGTCTTTCAAGGCAACCCCTTCACCCTCACACCCAGATGCCCCCTGTCTTCCACCCAAAAGCGGCACCCTTTCCCTGTTGAGTGATCTAAGTCTTGATAGCAAAAAGGCTCAAAGGCCCCCTGCTCCTCTGCCTCCGGATTTCAAGGATGATGCTCTTCCGCTGAATCCAAGAAAACCTATGACCGATGTCAAGTCAGGCAAGGCTCAGCCAAACACTTACATCAAGTCTAAAAGTCACAAGCCCAACAATAAAGCGGCGAAATATGAAGTTCAAGCAGATGAGGACAGTGACCATGATTATGAGCAAGTGGACGACAAGTTGAGAAGAGCACAGgaccattttttattttactgaacCAGCGAGGTTGAGGAATAACTATTAAAAGGCTAACTAAAGTCTCATTGCATAAAATAGACTAGACTATATAGGGTGCAAGACAATGTCAGAACTACGCACTGATAGCCAGCCACTGTAACTGTGAATACTTTGAGATGGGACTGTGCAAAACAGGATACATGTCTTATTGTACACATATTTTGTTACTTGGTTTTCATTTTCTACATTGCTACAGTCACAAGTCACACTTGCCAACCGATTATCCCAAATGCTTATCATAATAAAAGCctattggtgtt
>XM_021561889.2
TTGATTGTTAGATCAGTGGCACCTCTCTTGGAACCACAGTTGAGCCTTGACAGCACAACATCGAGGCAGCACTGCAGTGATGGCAGGCACTGAAACAGTTATGTCCCTGCAAGAATTAATTGCATCCTTGGATAAAACATGTCTGCCACGGATTCTGCAGGTTTGCTCTGGGGTATACTTTCAAGGCTCTGTTTATGAGCTGTCGGGAAGCGAGGTGTGCCTGTCCACGGGGGACCTGTTGAAGGTCATCGACATCGAGCTCCTGTCTGTCAGCTGTGAGGACACCAGCAACAATGATAAGTTTGAGCTGCCCATCAACCATGCAGATCTGTTCAAGCTGGTTCCAGAGGAGATGCCATACAGCACAGTGGAGGAGATGGTGAGTCTGAGGCCTGTAGGCCTGGACACCTGCTTTCCCTTCACCTTCACCAGCCGATGTGAGCTGACCTTACAGAATTTCACGCTCGGTGCCGGGATGGCCGTGACCATGCTACACATCGAGCAGCAGGACGGGGGTGAGGAGAGCTGCGTCCGCTGTCAACTCAGAGGCCAGCAGGGGGCTTCGGCTGACGTGCTAATCCCCTACTCCTGCCGTGGGGAGTTCTATGAGTGTGAGAGTGACCAGACCTACACCCTCCAGGAGATCATGTCCTCGCCCCACCTCTGCAGCCGGCACTTTTGCTTCAGCAAGAAGACCAAGCACGGGGCATCGCTATTCTTCAGCCCCATATACCAGGTCCAGGCCATCATGCACTTGAGGAAGAACATAGTCAAGTTCCCCTCCAGCTTGGAGGTGGATGTGGTCGACGTGACGACGGAATCCCAAGACTTGACATTTGTGACCCCGCTCACTCTGCTCGAGGTCTTTGCACAGCCAGACGAGGCCTTCCCCACAATGGCTGAAATACTGGAGCACCATGAGGGCCAGCCTCTGTTCCGTTGTACCTGGCTGGCTGAGCTACACAAGGGCCATCCTCTAGTCCTTCACAAGCGTGGTTCCTCAGCCATGGTTCTGGCTTCGGGTCTCAAGGGGCGCAAGGCCCGCCAGTACTTCCTAATGTCGCAGAGCTACGGGGGACGGCTGCGACGGAGGCCGCGGGAGTTCGAGTCGGTGTACGAGCTGTACGCCGCCTCGACCCAAGCGCCGTTACTCACGGTCAGGGTGACGCGGCACagtgaggagctggaggaggaggggcTTCTGGCACTCAGTGTGGGCGAGCAGCTGGAGGTGCTGCGCTGCGAGAAGGTGAAGCTGCCCGGAGGAGGAACCAGCCAGGAGGAGAAGAATAACCAGACCGTGGAGGTCCTTGTATGTAGACGTCTTCAAGAAGTGGACgatgacgaggaggaggatgaagaggagaaggaggagagtgaGGTGGTCCATTTGCCCATGTACATGCAGAGCCACTTTGTGGAGAAGCTCACGGACAATAAGAAGTACAGCCTGAAGGACTTGTGCAAGGCCTTTGCTCTGCCACTGGACGTTAAGGTGGTGAGCGGTGACGCAGAGCTGGAGAAAGATCCTCTGGTGGGGTTCTCATCCCTGAGGCTGCAGGAGGCTACTATACAGCCCATGGTCCAGGCCAGCCTTCCAGGAAAGCCAGAGAGGTGCTTTGAGATACCCACAGACTGGCTTAACATGTCTTTGTCTTTTACTAACGACCCCTTGCCTTTGACCCAAGAATATCACCTGGAGACAGTTACAGAGGTGACAGACTCATTCTATTACGAATTTCGAAAGCTCACCGCATCAGATGAGCCCCCACCACCACGTCCACCAAAGCCGAAGCCATCATCAAGATCAAATCCACCGTCAGCCTCAAAACCATTGTCAGGCTCAAAGCCATTGTCAGGCTCAAAGTCTTTCAAGGCAACCCCTTCACCCTCACACCCAGATGCCCCCTGTCTTCCACCCAAAAGCGGCACCCTTTCCCTGTTGAGTGATCTAAGTCTTGATAGCAAAAAGGCTCAAAGGCCCCCTGCTCCTCTGCCTCCGGATTTCAAGGATGATGCTCTTCCGCTGAATCCAAGAAAACCTATGACCGATGTCAAGTCAGGCAAGGCTCAGCCAAACACTTACATCAAGTCTAAAAGTCACAAGCCCAACAATAAAGCAGCGGCGAAATATGAAGTTCAAGCAGATGAGGACAGTGACCATGATTATGAGCAAGTGGACGACAAGTTGAGAAGAGCACAGgaccattttttattttactgaacCAGCGAGGTTGAGGAATAACTATTAAAAGGCTAACTAAAGTCTCATTGCATAAAATAGACTAGACTATATAGGGTGCAAGACAATGTCAGAACTACGCACTGATAGCCAGCCACTGTAACTGTGAATACTTTGAGATGGGACTGTGCAAAACAGGATACATGTCTTATTGTACACATATTTTGTTACTTGGTTTTCATTTTCTACATTGCTACAGTCACAAGTCACACTTGCCAACCGATTATCCCAAATGCTTATCATAATAAAAGCctattggtgtt

Function


NR:

description
protein THEMIS2-like isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021561909.2 False 2701 mRNA 0.52 6 38952824 38958991
XM_021561900.2 False 2501 mRNA 0.52 6 38952824 38963779
XM_021561889.2 True 2505 mRNA 0.52 6 38952824 38963780

Neighbor


gene id symbol gene type direction distance location
LOC110489192 LOC106605112 coding downstream 60778 38858506 ~ 38892046 (-)
LOC110489186 NA coding downstream 98566 38852233 ~ 38854258 (-)
LOC110489143 LOC106605116 coding downstream 201595 38738678 ~ 38779271 (-)
LOC110489131 LOC106605119 coding downstream 458483 38379192 ~ 38494341 (-)
LOC110489123 LOC106605177 coding downstream 865426 38086165 ~ 38087398 (-)
LOC110489261 LOC106605105 coding upstream 11825 38975605 ~ 38983972 (-)
LOC110489287 LOC106605101 coding upstream 233886 39197666 ~ 39209506 (-)
LOC118939935 LOC106605099 coding upstream 254771 39218551 ~ 39220640 (-)
LOC110489325 tpi1b coding upstream 265032 39228812 ~ 39233769 (-)
LOC110489429 LOC106605091 coding upstream 374409 39338189 ~ 39347511 (-)
G140560 mecr non-coding downstream 18596 38933850 ~ 38934228 (-)
G140511 NA non-coding downstream 34248 38875460 ~ 38918576 (-)
G140498 NA non-coding downstream 95804 38856703 ~ 38857020 (-)
G140496 NA non-coding downstream 96716 38855888 ~ 38856108 (-)
G140456 NA non-coding downstream 105090 38847225 ~ 38847734 (-)
G140506 ppp1r8 non-coding upstream 6849 38970629 ~ 38989073 (-)
G140846 LOC106605103 non-coding upstream 37586 39001366 ~ 39002616 (-)
G140857 NA non-coding upstream 55482 39019262 ~ 39019499 (-)
G140862 NA non-coding upstream 63787 39027567 ~ 39027804 (-)
G140871 NA non-coding upstream 77746 39041526 ~ 39041636 (-)
G140479 NA other downstream 124629 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 904158 38046700 ~ 38048666 (-)
G139231 NA other downstream 1199866 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1489066 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 2103479 36844929 ~ 36849373 (-)
G140879 NA other upstream 100082 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 800153 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 1260842 40224622 ~ 40298333 (-)
G142918 NA other upstream 1899434 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 2750766 41714269 ~ 41730507 (-)

Expression



Co-expression Network