LOC110489261 (LOC106605105)


Basic Information

Item Value
gene id LOC110489261
gene name LOC106605105
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38975605 ~ 38983972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561924.2
AAACCACCCACCCTACTCTCTTCTGCTTCTCGCAGTTATGTCATTCACCAGACCGTTGCCTTTTGTTGTAAAAGTTGTCAATGGTAGCTTTCGGCAGTTAGACGTCCATTGCAATGGAGTTATTTGAAACGTTGAAAAAAGTGACGCTAGATTCCTATCGCATTCATCACTTGGTTGCAATATTTAGCTTGGTCTATGTAATTCTTAAAATCTCTAAACTTATTGTCAAAAGGAATGAATGGATTCGGGCGCTCGAGACATTCCCAGGACCACCAAAACACTGGCTTTTCGGGCATGTACGAGAGTTTAAACAAGATGGGAACGACATGTATAAGGTTGTCAAATGGGGAGAATCGTACCCCCTTGCATTTCAAATGTGGTTTGGTCCATTTGTTTCCATCCTCAATATTCACCACCCAGATTATGTCAAAACCATCCTGGCATCAACAGAGCCCAAAGATGACCTTTCATATAGATTTCTTATTCCATGGATAGgggaTGGTTTACTGGTGTCTGAAGGTCAGAAATGGTTCCGCCACAGAAGACTCCTGACCCCTGGCTTCCATTACGATGTTTTAAAGCCCTATGTCAAAATGATGGCTGATTCTGCCAAAACGATGCTGGACAAATGGGAGACTCACTCAAAATCCGACGAGTCATTTGAGTTATTTGAGCATGTGAGCCTCATGACACTGGACAGCATTATGAAGTGTGCCTTCAGCTCCAACACTAACTGCCAGACAgtgcgagggggagagagTGGAACCAACTCGTACATTAAGGCTGTGTACGAGCTCAGTGATCTGGTGAATGTCCGTTTCCGGACCTTTCCCTACCACAGCGAGTGGATCTTCCAACTTAGCCCACATGGGTACAAATACAGGAAGGCATGCAATGTTGCACACAGTCATACAGAGGAAATCATACGAAAGCGAAAAGAGGCCTTAAAGGACGAAAAGGAACTGGGCAGGATACAGGCTAAGAGAAACCTGGACTTTCTGGATATCCTGCTCTGCGCGCGAGACGAGGACCAGCAGGGCCTGTCAGATGAGGCTATCCGAGCGGAGGTGGACACCTTCATGTTTGAGGGGCACGACACCACAGCCAGTGGGATCTCCTGGACCCTGTACAGCCTGGCCTGCAACCCAGAGCACCAGCAGATCTGCAGGGACGAGGTCATCAGCGCCCTGGAGGGGAGGGACACCATGGAATGGGAAGATCTCAGTAAAATACCATACACAACCATGTGTATAAAGGAATCCCTCCGCCTCTACCCTCCTGTACCTGGGATGTCCAGGAAGATAACCAAACCTATGACGTTCTTCGATGGGAGGACTGTGCCTGAAGgTTGTCTTGTTGGAACCAGCATTTTTGGCATTCATAGGAACGCCACCGTTTGGGAGAACCCTAACGCATTCGACCCACTCCGATTTCTGCCCAAGAACTCTGCAAAAAGATCACCCCATGCCTTTGTCCCTTTCTCTGCCGGCCCGAGAAACTGCATTGGGCAGAACTTTGCCATGAATGAGATGAAGGTGGTGGTGGCACAGACACTCAAGCGATATCAGCTGACCGAGGACCCAATGAAGAAACCAAAAATGATTCCAAGACTGGTGCTCCGCTCACTCAATGGGATCCATGTGAAAATCAAACCTGTCGATCTTGAACCATAAGGAATGTTATAGTTGCACTTTTGTTATCAGGCATAGGCAACTGTTTGTGGAATGTTCTTATGAATTTGTTTTTAACATGCTAATTCACCAGGAAATGGGAAATAAAACTTACATAaggaatattttttaaatattaactTCTCAAAGCTATATTCAGAATTGTAATTTAAATATCCATGTAAGGAGAATTTTATGTCTTATATACAAAGATGAATTTAACACTAATTTATGTTACTAATATTTTGCTAGTAATTGCCTAAATGTTGTTTGTTTTTCCTTTTGACATATAGCCTATGGTAAGTCCATGTCCCTTGTCAGTGATGTGACAGTTTGAAAAGGAATAGACAAAGGATTGAGTTAATGTTATTCTCACTATTTCAAATAAACGTGTGGTGCAAACCACTCAGGAAATT

Function

NR:

description
cytochrome P450 4B1-like isoform X1

GO: NA

KEGG:

id description
K07426 CYP4B1; cytochrome P450 family 4 subfamily B1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561924.2 True 2086 mRNA 0.44 12 38975605 38983972

Neighbor

gene id symbol gene type direction distance location
LOC110489249 LOC106605107 coding downstream 11825 38952824 ~ 38963780 (-)
LOC110489192 LOC106605112 coding downstream 83559 38858506 ~ 38892046 (-)
LOC110489186 NA coding downstream 121347 38852233 ~ 38854258 (-)
LOC110489143 LOC106605116 coding downstream 224376 38738678 ~ 38779271 (-)
LOC110489131 LOC106605119 coding downstream 481264 38379192 ~ 38494341 (-)
LOC110489287 LOC106605101 coding upstream 213694 39197666 ~ 39209506 (-)
LOC118939935 LOC106605099 coding upstream 234579 39218551 ~ 39220640 (-)
LOC110489325 tpi1b coding upstream 244840 39228812 ~ 39233769 (-)
LOC110489429 LOC106605091 coding upstream 354217 39338189 ~ 39347511 (-)
LOC110489468 LOC106605089 coding upstream 366960 39350932 ~ 39365872 (-)
G140560 mecr non-coding downstream 41377 38933850 ~ 38934228 (-)
G140511 NA non-coding downstream 57029 38875460 ~ 38918576 (-)
G140498 NA non-coding downstream 118585 38856703 ~ 38857020 (-)
G140496 NA non-coding downstream 119497 38855888 ~ 38856108 (-)
G140456 NA non-coding downstream 127871 38847225 ~ 38847734 (-)
G140846 LOC106605103 non-coding upstream 17394 39001366 ~ 39002616 (-)
G140857 NA non-coding upstream 35290 39019262 ~ 39019499 (-)
G140862 NA non-coding upstream 43595 39027567 ~ 39027804 (-)
G140871 NA non-coding upstream 57554 39041526 ~ 39041636 (-)
G140870 NA non-coding upstream 59303 39043275 ~ 39044478 (-)
G140479 NA other downstream 147410 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 926939 38046700 ~ 38048666 (-)
G139231 NA other downstream 1222647 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1511847 37442359 ~ 37463839 (-)
pnrc2 LOC106605140 other downstream 2126260 36844929 ~ 36849373 (-)
G140879 NA other upstream 79890 39063862 ~ 39064418 (-)
G141363 LOC106605077 other upstream 779961 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 1240650 40224622 ~ 40298333 (-)
G142918 NA other upstream 1879242 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 2730574 41714269 ~ 41730507 (-)

Expression


Co-expression Network