LOC110489273 (LOC106605104)


Basic Information

Item Value
gene id LOC110489273
gene name LOC106605104
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38987069 ~ 38990470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561959.2
ATGCCCCTTGCTGCATATCGTTGCACAATGCGCAAACGCGGATCTGGGTGAGAAGTATGATAGCGAGCTAGCTATTCCTCCCCCATCACACGGGCTCAACTCTAGCCAATCTGTTACTGTGAACGTTGAAAACGTTTATTTGTACCTGCCTAGCAACCTAGCTAGCTTGTTTCAATGTAACtatgagctaacgttagctaggttgcAAGTTAGCGTGAATTGCTGCAGTGGCAGTTTGCGAAGGAAGGAGCAGGTACTCGGCAGTCCAAGCCGCCAAACATAAGTTACCTGTCTGACACTGACGAGTGATGGAGGCCCCACCAGTCTCAGTGCTGCCCATCACGGGGGGCACAATTAACATGATGGAGTACCTGCTGCAAGGCAGCGTCTTGGACCAGGCCCTCGAAAGCCTATTGCACCGCCTCCGGGGCCTTTGTGACAACATGGAACCCGAGACATTTGCCGACCATGAGCTGGTCTACCTCCTGAAGGGCCAGCAGGGCAACCCGTTCCTGTTGCGAGCCCGCCGCTCCCTCTCCCACCCCACAGTGCCCTGGCACCTGCGCTACCTGGGTCAGCCGGAGGTGGGTGACAAGTCCCGCCACGCGCTGGTTCGCAACTGTGTGGATGTGGCCGCCTCGCACAGCTTGCCCGACTTCCTCAATGAAATGGGCTTCCGCATGGACCACGAGTTCATAGCCAAGGGCCACATTTTCCGCAAAGGTGTGCTCAAAGTGGTAGTTAGTAAACTGTCTCGCATCCTGGTCCCCGGGAATACAGAGAACACTGAGCCGCTGTCCCTCTCCTACCTGGTGGAGCTCAGTGTATTGGCCCCTGCGGGCCAGGATACCATGTCAGAGGACATGCGCAGCTTCGCTGAGCAGCTCAAGCCCCTGGTTCACCTGGAGAAGATTGACCCCAAGAGACACATGTAAGAAGGAGTGTTTTATGATGAGCCTCTGTTGGCTGTCATGGACAAAGTGTAgtttttattaaaacattttttttttttttacatgggacTTATTTTTGTATGATTCCTATGAGAAAGCGCTTTCCCACAGTATTTTGTCTCTGTAAATGAACTCTAGATCTCACAATCTTGATGCGTGTCTCGTACATTTGGAGAAGGACCATCTGTCATTTGGATGTTAGTGGTGTTTGACAAGGACTTCACAGGAGGTTTATGACATAGCCAACATGGCTGATGTGACAAATGAGGCTTTGAATGAGTCAATAAATAACAATGTTTCTATTCACAGTGCCGAACTCTTAGAATATACGTTTTGTGTAGTGCTTTGTTCTGATTTTGAGATGTTTTAAGAAATGCACAGCGCTATAGtgtttataaaaaaatgtttttctcaaCTCAA

Function

NR:

description
mediator of RNA polymerase II transcription subunit 18

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15135 MED18; mediator of RNA polymerase II transcription subunit 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561959.2 True 1373 mRNA 0.49 3 38987069 38990470

Neighbor

gene id symbol gene type direction distance location
LOC110489269 LOC106605108 coding upstream 13112 38861507 ~ 38973957 (+)
LOC118944175 NA coding upstream 21568 38965348 ~ 38965501 (+)
LOC110489231 LOC106605109 coding upstream 34958 38942222 ~ 38952111 (+)
LOC110489198 mecr coding upstream 50926 38928238 ~ 38936143 (+)
LOC110489224 LOC106605111 coding upstream 70527 38899166 ~ 38916542 (+)
LOC110489280 LOC106605103 coding downstream 10251 39000721 ~ 39044657 (+)
atp1a3 atp1a3 coding downstream 179803 39170273 ~ 39195284 (+)
LOC118944148 NA coding downstream 243890 39234360 ~ 39234415 (+)
LOC110489329 LOC106605098 coding downstream 246057 39236527 ~ 39255790 (+)
LOC110489358 LOC106605095 coding downstream 265956 39256426 ~ 39298064 (+)
G140325 NA non-coding upstream 12449 38974072 ~ 38974620 (+)
G140363 LOC106605107 non-coding upstream 23186 38952835 ~ 38963883 (+)
G140318 NA non-coding upstream 135007 38850907 ~ 38852062 (+)
LOC110489178 LOC106605114 non-coding upstream 139383 38823585 ~ 38847695 (+)
G140409 NA non-coding downstream 2533 38993003 ~ 38993230 (+)
G140595 NA non-coding downstream 16378 39006848 ~ 39007112 (+)
G140598 NA non-coding downstream 24403 39014873 ~ 39015078 (+)
G140601 NA non-coding downstream 27741 39018211 ~ 39018430 (+)
G140608 NA non-coding downstream 36705 39027175 ~ 39027490 (+)
G139179 NA other upstream 935325 38051359 ~ 38051744 (+)
G139101 NA other upstream 1043057 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1046355 37919735 ~ 37940714 (+)
G139004 NA other upstream 1163059 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 2585098 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2548825 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2977904 41968374 ~ 41969317 (+)
G144661 NA other downstream 3519860 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4740402 43730872 ~ 43731218 (+)
G146091 NA other downstream 4778237 43768707 ~ 43769162 (+)

Expression


Co-expression Network