LOC110489280 (LOC106605103)


Basic Information

Item Value
gene id LOC110489280
gene name LOC106605103
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39000721 ~ 39044657 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561973.2
ATTATGTGCTACGCCTACATTTTCTTCCGGTGATGTAGGGAAAAGAGCAGAGATAATTGAACAGCATGtagctattttattttttattcactcATATCGGATTAGAATCTGGGGTTACCTAATCTCTGTTAATCTGAACTAAATCTATCTAATTGTGGTAGAAAACTACACTCCCGCTGTTCTGGTGCACCACCAGAGACGCTTTGCGCATCAGTGGGTATTTTGTGACACCGTGCCGCCAAAAGGAGATTATCAACTGATTCTCCAAGACTGATCATAAGGACATTAAGAGAGTATATCTGCACCAAATTCTCTTAAGAGTGACAAGTTAGGCTAATTGGAATCTGGAGACCAAATATCGCATTAAAACGCGCAGCAGCCACTTTTCCAGAGATTAAGAACATTATGCATATTTTTCATGTTGCAACAACATACCGCTTTATGATGGGGTTGATATGATATGTGAGAGAGTTCTGGCCGGGGTGTTCTAAACATGTTCTGGGAGTAATGTGCGCGCCATCCAATGGCAGCATCTATTCCACACCACAGCGTCAGCGCGTCATCAGTTCACATTTACGAAACGAGTTTTATTAAATGAGGACATGTGAGGGGATCTGAGAGTAAGAAAAGGAGATTGGAGATAGACTGACTACATGTTAGAAATACTAGAGGCGAGCAATACGTGTGTTACAATTATTTATCAAATGGACAACAACAGACTGATGCTGGACTGTGCAATGTCTGGAAGTGTGTCGCTTTTTTAAAAGACACATGCGACccgattttttaaaaaaaaagtatcatTGCAGTTGAATTCGGAATcgtttgtgtgtgactgtgaatGGATTTGCATTTGCCAGCCTATTCCGTGAAGACTGGAATATTTAATAATTTGCGATAATCACACATCATCGCTTGTCTGTGCTGTCTGCACAATCCTGTTGATTTAAAATTATCATTGTCTAATGTTTTTTCGGATCCTTTCGACGCCTCCTGCATCTCTATTCTCGTTATATGAGGTATCATCTGTTGCTGCAGCCGGATGAACTGACACTGTCATGCATTTGGATTGACTCTAGCTGCTGGAGATGTAGGCAATTCACAATTccccaaattgaacatgttttatttcaGGTAAAATGGGAGAACGATTATTGTTACTATTATTGCTACTCTTATCGTTACATTCGGGTCGGTGATAGCCCACTGCAGACGAGCTATTCAACATTATCAATCTCCACAGCAGCCGGCTTCTCTTGAGATTTGATCGTTACTTTATTGAATCAGACTGTAATATCCTCGTCACGAGACGGATTTCGGTTTGAAGTAGGCCTAGTATTGGAGACAATACGGGAATAGTGGAGGTATTGTATTTCTTTCTAACCCGGTTATTCCTTCACAACTGAGGATAAATGTTGATGATGGAGGACGACGAATTGGCTCATCAGGTTGATATCGATTCGGATTTCGAGCCGCAAAGCCGGCCTCGCTCGTGCACTTGGCCACTGCCTTGTCCGGAGGATTTCCCCGAAGTGCAGGAGGTCAATGGGGGTCTTCAACTGACGACCATCAAGGTGGAACCAGATGACAATCTAGCCGTTTCAGCGTGCAGAGCGGGGAGAATGGGTGGCACGCCGACCGAGCTGAAGCATCCAGCAGTCGCCCCGGCTCCCATCCGGGCGACGCACCCATGCTTGGCCAGCGCGGCACTTGATGTGACTGGACAATTGCGCAAAGCCAAATCCTCGCGGCGGAACGCATGGGGTAACCAGTCGTACGCGGACCTTATCACACGAGCCATTGAAAGCACCCCTGAAAAAAGACTCACGCTTTCACAGGTCTATGATTGGATGGTCCGCTATGTTCCCTATTTCAAGGATAAGGGCGACAGTAATAGTTCAGCTGGATGGAAGAACTCCATTCGACACAACCTGTCCCTCCACACGCGCTTCATCCGGGTGCAGAACGAAGGCACGGGCAAGTCCTCCTGGTGGATGCTCAACCCTGAGGGGGGCAAGATGGGAAAGGCCCCTCGTCGGCGAACCGTCTCCATGGACAACAGCACCAAGTACCTGAAGAGCAAGGGCCGGGTCAGCCGCAAGAGGGTGGGCAGGCCAGGGATTGGTTCTGGAGCTCAAGTGGGGCTCCAGGCTTCCCCTGAGCAGGGTAGCCCACCGGGGAAGGTTCTCCCAGGCAACATAGGGGGAGCTGGGGGTGTGGAAGGAGAGTTTGACGCCTGGACGGAGCTCCACTCCCGGGCTAGTTCGTCTACGTCGACCCTGAGCGGGCGTGTGTCGCCTATCCTGGCCGAGGGCGAGCTGGAGGAGTCAGAGGAAAGCGGGCTGTCCTGCTCGGCCTCGCCACacctctacccctccccctcctccagtgCCCGCTCCCCTGCCATGGGGGCCGTGGGAGGCCACTGTCCACCCGTGGAGCAGCTTCCCCAGCTGGCTAATCTCACCGGGGCGATCAGCCTGGAGGAGAGGCTCTTGGAGGAAggctaccaccatcatcatcctcacctGGCAGCGGGCCACAAACTCTCCCCGGTCTATCATTACAACCctggggttaaaggtcaggggtcaTACTGTGGCGCGGTCTACAGCCAGGCTGGGATGGGCATGCTGCGCCACCACTCGCCCATGCAGACCATCCAGGAGAATAAGCCGGCTAGCTTCTGCGGAACCTTGCCGGCCTACTCAGGGACCAACGCCCTGCAGAGCCTGCTGACAGGGGGCCCTGGAGGGCCACAGCAGTACTGTGCCAAGGACATAATACTGGGCCAGGAGAGAGATGCCCAACCAATGATGGGGCCCTCCACGAACGGAGTGAGCTCCACCCGTCACAGCCACCACCCCGGACACAACGGACATGCAGTTCACAGCCACAACGGAACTCAGAGTCATAACCTCAACCCTGTGACCAACCACAATAACCACAACCACAGCTCTCCTCATCTTGGCCACAACCTCAGTCAGAACCACAGCAACCACACAACGCACACACCGACTCGAGCCCCAGCCCTGGCCCCACGCATCAGCAGTGGCCACCTCCAGCCCTACAGCCACAAAGCCCCCTATCTTTACAGCCCCCCATCCCACGCCCACCTCCCCGCTTCCACCACCCTGCCACCCAACCCGGCCGGCATGCTGGGGATGCCCCAGGACTCCTGCCACCTGGCCACCGCCCCCCACCCCTCGCACCCTTGCCACAACACTTACCCCAGCCCCCAACACCAGGGAATGGGCAgtggactgtaccaccaccaacTGGGCATGGTGGGAGGCTGCACAGGAGGCAGCTACCATGGTAGCTCGTACCACCAGCCTCACCCCCACGAGAGACTACCAGCCGATCTGGACCTGGATATCTTCCACGGGAGCTTGGACTGTGACGTGGAGTCCATCCTCCTCCACGATATCATGGACTCCGGAGAAGAAATGGACTTTAACTTTGACAGCTCCCTGGCGCAGGGGTTGGGCATCGGGATGGGCATGGGGGTGGGCCTTGGGATGGGCATGAGTGGACTGGCAGGCCCTCAGCAAGCCCACAACAACCAGAGCTGGGTGCCCGGCTGAGACATTTCCCAGAGTGCTTCAGGGCAGGCCTCAGAAAAGACTCCACTACAGAGAGTGCTGCAGGCCAGCCCTCACTGCCCCTCAGATAGACAGACTCCACCCCTCCTCACTAACATGTTGGGGAGCACTGTGCATAACTGTGTCATTCCTGGACTGAAAACAGAGGAGATGGGACAAACACTCAGTCGCTCACTCCCCCATACCTTTCTGTGTTGTGCTATAAAATGCCCCGGTCCTATCTCTCCCTACCCGGACTCTCTCTGGAGACTGTAGCTCATGTCACATTGGTTTTTCTCACATCAGCTGTATACTGTGATGACAATCTCAACTGTGTTGTTGCCCAACCTTGTCCCTTTCTCATCTACTATCATGAGACCTGAACTCACCAAGCACTTTAAAAGAAGTGGGTCAGACTCCACAGCTCACTCAcatacagacctgggttcaaatactattcaaaaTCCTTTCAGACACTttatctgggcttgattgagTTTGCCTGGCGCAATGGAGCCAATAGAATTGTCGCAAACGTGCAAACCCCGCCTATCTTGCACTCCATGGCAGACTGCAGCAAACGCTAAACGTATTTGAAATATCTCAAATGGTATTTGGACCCAGGTCTTGTCATGTACTGTAGCAGACAAACTCATGCAGAGTTTGGCTGTTTGCGATGTGGGTACGGTATTTGACATATAATTTTGCTGAACAAACCAAGAAAGCGCAAGAATCCGGATCTATAGATACATTTGTGGAATAGATTTATAATGGGGGTTGCTGTGCTGCAATGTTTATAATGGGGGTTGCTATGCTGATATGTTTACTGCCAGTGGGAAGTAGGGAAAATGTCATCAAAAATGTCTGATTGATTGGCTATTTGGGCTCTTTGTTGTTGGCTCGTATTCGGTCAAATCAAATGATACATTTTGGGACAGACTTACAATGATCTGTGCCTCTTCACTGACCTAATTGAAAACTATAATCTGGTGCTTTACTTTACTGTGCAAGTGAAAGTGTATGTTATATTAGTTGGTCGCATTATGTTCATTGAATTCATCTTTGGAATATTCAGAagacaaaatggaaaatggcGTATCACCTTGCCTCAACCAGGGTTTATTTTGTCCTTTGTGGCGCCAGCTTTTCTCTTTAACTTTgctttctctgtctctgccccccccccccccccccccaacagagaCAAAGTGATCATCCCTCAGACCGACCCATTAAACTGTGCTTGATTGAAATTCAGCGCCTTGCTTTTAATCTCCAAAGTGATGCTGCAGCCATGCATCACTATCGGGGATCTAAACGCAACAGcctcccctcccatccctccctctttctctctctctctctcacccctgcaGTTGTCGCTAACGTAAATGTGCTGTTCTGATCGCCGTGATTAACACCTAGTCATCCTGGCCCGGGAGGGAGACAACACTGTCCGCGTTTGTCTGTTCGGAAAGGACACcgatgggggggagggggtaggggggAGGGACATAAAACCCACAAAAAATAAGTAAACGCAGGTTGATAGTAGGTCGACAGCAATATAATCACATGATCATGTCCCTTTCCCCGTCCCTTCTGGGCGCGTGTGTCTTAAACGggtagtgtgtttgtgttgtaagTCATCAGCATCGTTGTCATCATCTGTATCTTGTGTTCCCTATCACATGTTATGAGGTCGTCTTGGCTGTGTTTTGGGCCTTTGGGAGTTTGAGTTGAGACTGGTTCTCTGATATAAGGTACTGTACATATAGGCGGAGAGGGGTAGAAAAGACAGATGGAAACAATCAGCCAATCAGATTGGCATTAATCTCTGTCAAACAGGGTTGTTGTTCCTTCTTTACCTTCCTTCCACACATGTCCACGTTCAGCGCGTTTCCTTTGTTCGTCGTTCTCTCTTGTTGTCGTTGTAATGTTGACGCTCTGAAGGGACATTCAGGGACAGGGTGTATATGGCATGGTGATTTGTGAAGGCGGACATCCGGATCCACGCCCTATACGCTAGGCTACACCAGCCCCCATGAATTGGACCACGGTCTCTTTACTGTAGCTCTAGCCACCATACAAAGCCTCGGGACAGGAGATAGccatgggtcatgttcattaggccaCACGCCGCACGCCATTGCGAACCGCCTTAAAGCGCTTTGCAACGGAAACCAAAAAtgtgtgtttcttattggacaaagtCCAGGTTGTCCCACTCTGATTCAGTTAGTTTTTGTTCGTTTGATGCCTAAAGAACATGAACCAGCTCTCCTGTCTCCCTCAGTAGACACACTCTGCTGTGGACTGTACTGAATACTTCTAACAGGAATGTCCTAAAATGTACACCGTTCCGGGGATTTCCTAACATGGACACCGTACAAGGGGCATATCATTACAGCCAAAGGTCAAGTATGGCACAGACTAGCAGGCCCTATCCTTCGAGATCAACATCCTTATTCTAGGATGTCGACTCTTGTTCAATCTCAGTCTGTGAAGTATGTGTGGAAGGTCTTGGCGAAAGGACCCCTTGGTAGGGCTATGTTTTAGCCTGCGCTAAAAAGGTTTAGTGATGCCCCGATATTGGAAAATAGAGTTATATATAATGTCAAACGTTATCATACACATTTATTTATGAAAGAGGTGGGTCTTTGTCACCCCTGAGTGTGGTAGTTTGTGAGCCAACTCCAATTTCCTTTGCATTTTTTTTTGGTCTTTGTTTTTCCGCGTCACACTTCCTTTACAGTCGTAAGGATTTTATTTTGTACAAAAATCTATATATTGAGGATATTGTATAATAGTTTTTAAACTCAAAAAGAAAATATGAATTTTGTCGtctatttcttttttttaaagcgaATGTATCTTATCTGGTGACtgttaaataaatgaaatgaaAAGAAA
>TU161595
CAAAAAATAAGTAAACGCAGGTTGATAGTAGGTCGACAGCAATATAATCACATGATCATGTCCCTTTCCCCGTCCCTTCTGGGCGCGTGTGTCTTAAACGggtagtgtgtttgtgttgtaagTCATCAGCATCGTTGTCATCATCTGTATCTTGTGTTCCCTATCACATGTTATGAGGTCGTCTTGGCTGTGTTTTGGGCCTTTGGGAGTTTGAGTTGAGACTGGTTCTCTGATATAAGGTACTGTACATATAGGCGGAGAGGGGTAGAAAAGACAGATGGAAACAATCAGCCAATCAGATTGGCATTAATCTCTGTCAAACAGGGTTGTTGTTCCTTCTTTACCTTCCTTCCACACATGTCCACGTTCAGCGCGTTTCCTTTGTTCGTCGTTCTCTCTTGTTGTCGTTGTAATGTTGACGCTCTGAAGGGACATTCAGGGACAGGGTGTATATGGCATGGTGATTTGTGAAGGCGGACATCCGGATCCACGCCCTATACGCTAGGCTACACCAGCCCCCATGAATTGGACCACGGTCTCTTTACTGTAGCTCTAGCCACCATACAAAGCCTCGGGACAGGAGATAGccatgggtcatgttcattaggccaCACGCCGCACGCCATTGCGAACCGCCTTAAAGCGCTTTGCAACGGAAACCAAAAAtgtgtgtttcttattggacaaagtCCAGGTTGTCCCACTCTGATTCAGTTAGTTTTTGTTCGTTTGATGCCTAAAGAACATGAACCAGCTCTCCTGTCTCCCTCAGTAGACACACTCTGCTGTGGACTGTACTGAATACTTCTAACAGGAATGTCCTAAAATGTACACCGTTCCGGGGATTTCCTAACATGGACACCGTACAAGGGGCATATCATTACAGCCAAAGGTCAAGTATGGCACAGACTAGCAGGCCCTATCCTTCGAGATCAACATCCTTATTCTAGGATGTCGACTCTTGTTCAATCTCAGTCTGTGAAGTATGTGTGGAAGGTCTTGGCGAAAGGACCCCTTGGTAGGGCTATGTTTTAGCCTGCGCTAAAAAGGTTTAGTGATGCCCCGATATTGGAAAATAGAGTTATATATAATGTCAAACGTTATCATACACATTTATTTATGAAAGAGGTGGGTCTTTGTCACCCCTGAGTGTGGTAGTTTGTGAGCCAACTCCAATTTCCTTTGCATTTTTTTTTGGTCTTTGTTTTTCCGCGTCACACTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561973.2 False 6497 mRNA 0.49 2 39000721 39044657
TU161595 True 1223 lncRNA 0.46 1 39043269 39044491

Neighbor

gene id symbol gene type direction distance location
LOC110489273 LOC106605104 coding upstream 10251 38987069 ~ 38990470 (+)
LOC110489269 LOC106605108 coding upstream 26764 38861507 ~ 38973957 (+)
LOC118944175 NA coding upstream 35220 38965348 ~ 38965501 (+)
LOC110489231 LOC106605109 coding upstream 48610 38942222 ~ 38952111 (+)
LOC110489198 mecr coding upstream 64578 38928238 ~ 38936143 (+)
atp1a3 atp1a3 coding downstream 125616 39170273 ~ 39195284 (+)
LOC118944148 NA coding downstream 189703 39234360 ~ 39234415 (+)
LOC110489329 LOC106605098 coding downstream 191870 39236527 ~ 39255790 (+)
LOC110489358 LOC106605095 coding downstream 211769 39256426 ~ 39298064 (+)
LOC110489375 LOC106605093 coding downstream 253752 39298409 ~ 39319882 (+)
G140409 NA non-coding upstream 7491 38993003 ~ 38993230 (+)
G140325 NA non-coding upstream 26101 38974072 ~ 38974620 (+)
G140363 LOC106605107 non-coding upstream 36838 38952835 ~ 38963883 (+)
G140318 NA non-coding upstream 148659 38850907 ~ 38852062 (+)
G140624 NA non-coding downstream 8003 39052660 ~ 39052928 (+)
G140626 NA non-coding downstream 11581 39056238 ~ 39056444 (+)
G140627 NA non-coding downstream 12000 39056657 ~ 39056986 (+)
G140628 NA non-coding downstream 12543 39057200 ~ 39057497 (+)
G140638 NA non-coding downstream 28126 39072783 ~ 39073005 (+)
G139179 NA other upstream 948977 38051359 ~ 38051744 (+)
G139101 NA other upstream 1056709 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1060007 37919735 ~ 37940714 (+)
G139004 NA other upstream 1176711 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 2598750 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2494638 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2923717 41968374 ~ 41969317 (+)
G144661 NA other downstream 3465673 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4686215 43730872 ~ 43731218 (+)
G146091 NA other downstream 4724050 43768707 ~ 43769162 (+)
G140619 NA non-coding upstream 3494 39039570 ~ 39039775 (+)
G140608 NA non-coding upstream 15779 39027175 ~ 39027490 (+)
G140601 NA non-coding upstream 24839 39018211 ~ 39018430 (+)
G140598 NA non-coding upstream 28191 39014873 ~ 39015078 (+)
G140595 NA non-coding upstream 36157 39006848 ~ 39007112 (+)

Expression


Co-expression Network