LOC110489325 (tpi1b)


Basic Information

Item Value
gene id LOC110489325
gene name tpi1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39228812 ~ 39233769 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562054.2
CTGAGAGGTTGGGTTACGTGGCCCATGATGATAAATACAGTGATTTGCGCCGGGGTCGTTGCTCTTCTCCCCGAAGTAGGTCCGCCTGATAAGAATCCAGCTCAGTTCTAAGGCCGAGAAACAACCTTATACTGCAAATATGTCCAGAAAATTCTTCGTTGGTGGTAACTGGAAGATGAATGGCGACAAGGCAAGCCTTGGCGAACTCATCAAAACCCTGAACTCTGCCAAGCTCGACCCCAACACCGAGGTGGTCTGCGGCGCCCCGTCAATCTACCTTGAGTTCGCCAGGGCCAAGCTGGACCCTAAGATCGGAGTGGCCGCTCAGAACTGCTACAAGGTCAAGGGGGGTGCCTTCACCGGGGAGATCAGccCTGCGATGATCAAGGACGTTGGCGTGCACTGGGTGATCCTGGGCCACTCTGAGAGGCGCTGGGTGTTTGGAGAGACTGATGAGCTTATTGGTCAGAAGTGCGCCCACGCCCTGGAGAATGGCCTGGGTGTCATTGCCTGCATCGGTGAGAAGCTGGACGAGAGGGAAGCTGGCATCACAGAGAAGGTCATCAACGCACAGACGAAGCACTTCGCAGACAACATTAAGGACTGGTCCAAGGTTGTTCTGGCCTATGAGCCCGTGTGGGCCATCGGCACCGGCAAGACCGCATCCCCCGCCCAGGCCCAGGACGTTCATGACAAACTGAGGCAGTGGGTCAAGGCCAATGTGTCTGAGGCAGTAGCCAACTCTGTCAGGATAATCTATGGAGgTTCCGTGACAGGTGGCACCTGCAAGGAGCTGGGAGGCATGAAGGATGTGGACGGTTTCCTGGTTGGCGGCGCTGCACTCAAGCCAGAGTTCGTTGACATCATCAACGCCAAGCAATAAAAACCCTGAAGTGGTCAGACCATATTTGTCCATATTTGAGGCCAACTCCATTCAGACGAAACCTGAGCCATTATCCTCAAAACTCGGCACTTAGAACTCCCTTCCCTTAgccttttttaaaaattatatatatttgtgtGATGTCTTTACCTCTTTCTTTTTTGTTGGTTTAATGTTTCAAAGAAAAGGAACAGTTTGACACGCATACTATACAGCAGTGAAAGGTGTTAGTTCCACTGAGTTTTTTTTGTACTAGCCTCCACTACTGTTTTTTAAAGGGACTGCGCTTGACCACACCATCCTGGATGGAACAACAACCCATGCCTTTACTTGAAAGTTTACAAACTTTTATGTATACAGTGTCAAAACTAGCAATCGGattcacttgtctttgtactaTAGATGACTCTTTGTGTAATTTATGTTTTGGGTCTTATCCCTTTCCATAGAACACATGATCCACTCTCTCATTGGCTACTCGGTCAAGAGGGAGGCGTCCATTACATGTCCACCATGTtttgttaggggggggggggctgactgtTGTTGTAATAAAAGGTTTAGAGT

Function

symbol description
tpi1b Predicted to enable methylglyoxal synthase activity; protein homodimerization activity; and triose-phosphate isomerase activity. Predicted to be involved in several processes, including gluconeogenesis; glyceraldehyde-3-phosphate biosynthetic process; and methylglyoxal biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including brain; cardiovascular system; mesoderm; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in carbohydrate metabolic disorder and triosephosphate isomerase deficiency. Orthologous to human TPI1 (triosephosphate isomerase 1).

NR:

description
triosephosphate isomerase B-like

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0004807 triose-phosphate isomerase activity molecular_function

KEGG:

id description
K01803 TPI, tpiA; triosephosphate isomerase (TIM)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562054.2 True 1450 mRNA 0.50 7 39228812 39233769

Neighbor

gene id symbol gene type direction distance location
LOC118939935 LOC106605099 coding downstream 8172 39218551 ~ 39220640 (-)
LOC110489287 LOC106605101 coding downstream 19306 39197666 ~ 39209506 (-)
LOC110489261 LOC106605105 coding downstream 244840 38975605 ~ 38983972 (-)
LOC110489249 LOC106605107 coding downstream 265032 38952824 ~ 38963780 (-)
LOC110489192 LOC106605112 coding downstream 336766 38858506 ~ 38892046 (-)
LOC110489429 LOC106605091 coding upstream 104420 39338189 ~ 39347511 (-)
LOC110489468 LOC106605089 coding upstream 117163 39350932 ~ 39365872 (-)
LOC100301666 LOC100301666 coding upstream 176479 39410248 ~ 39412570 (-)
LOC110489516 LOC106605085 coding upstream 208537 39442306 ~ 39449334 (-)
si:ch211-154o6.3 LOC106605084 coding upstream 215726 39449495 ~ 39465606 (-)
G140963 NA non-coding downstream 32268 39196230 ~ 39196544 (-)
G140907 NA non-coding downstream 33531 39192136 ~ 39195281 (-)
G140958 NA non-coding downstream 63389 39164972 ~ 39165423 (-)
G140957 NA non-coding downstream 65171 39163385 ~ 39163641 (-)
G140953 NA non-coding downstream 72105 39156483 ~ 39156707 (-)
G140997 LOC106605098 non-coding upstream 7148 39240917 ~ 39248171 (-)
G141003 LOC106605098 non-coding upstream 16496 39250265 ~ 39251111 (-)
G141046 NA non-coding upstream 93341 39327110 ~ 39327389 (-)
G141061 NA non-coding upstream 154952 39388721 ~ 39388929 (-)
G141073 NA non-coding upstream 165854 39399623 ~ 39399857 (-)
G140879 NA other downstream 164394 39063862 ~ 39064418 (-)
G140479 NA other downstream 400617 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 1180146 38046700 ~ 38048666 (-)
G139231 NA other downstream 1475854 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1765054 37442359 ~ 37463839 (-)
G141363 LOC106605077 other upstream 530164 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 990853 40224622 ~ 40298333 (-)
G142918 NA other upstream 1629445 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 2480777 41714269 ~ 41730507 (-)
G145010 NA other upstream 3473049 42706818 ~ 42707279 (-)

Expression


Co-expression Network