LOC110489418 (LOC106605090)


Basic Information

Item Value
gene id LOC110489418
gene name LOC106605090
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39328460 ~ 39337579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947907.1
CAGCCAATCTCTGTTGGGAAGGCGGAGGTACCAACTTCACTGATTGGCTGGTTTGAAAATAGCTAAATACATTATTTTTCGCAATTTAAATCCTCATTTTTTGCTGCGAAAAAGTGGAAGGACACTCACTCACTTCAAGCGAAACGTGCAAGGACATTAGCCATCTATCGTCATGGGATCCAGCGAGAGCAAGGTTGCTGTGGCCTCAACGCCCAAACATGACCCCAGCCATCGGATCAAACACGACCGTCTCTCTCAGCTTGTCGACCCACGGTCTCCATCTGTAGCCATTGACCGCACACCCATTCAGGTGGGTGGAACCGTCTCCTGTGTCCCAGTTGTGGAGAGTGTATGCTCCATTCTAGCCAGCGACCCTCGGTCACCCTCAGTCGGTGTCACCCGCACCCCAATGAAGGACTCCATGAGCGtgACAGTTAGCTCCTTCGCCCACCGCCTCAGTATGCTCCTCCACAGTGACTCTGTAGAAAGAGTTGCCCCTGTGCCCTTCAAGTTTCCCAACTTCAATGTGGAGGAAGAGGCCGTGGTAGAGGGAGAGTTAGGCTCCAGTGagccccttctctcccctcagccATCACAGGTCTCAGGTGACATGATTCAGCCCTCTCCCCAGAGCGTGGCTAGTCATATGCTTCTCATCCAGAGTCCCTTCGTTCTCGTGGGGGAAGCCCAGATAGACGTCGAAGCCGATTTCACTCTGGAGGAAGCCGAAGAGGCCAAGGAGTCTTCACTACACAAGCGCCTGAGTATGAGCTTGATCACCTGCCACGATGGTGTCGCCCCATCGCCGACCTTCGCCGAGGTGCACTACGACAGCCCTGCATCTCCTCTCCCTGAAAATGCTGCTGCTGAACTCCACAAGGAGGAACCTGACCATGCGAAAGCCCTTCCCTCGGTCACCTCTGACCCCGCACAACCTCTGACTCCCATGGCTGAACCATCCATCCCCACCATTACAGAGGTAACTGAAGTCACGGTTGCTACAGAGATTCTTAAAGTGGAGGTCCCAACACCAGTGGAGGAGCCAATGATGCCTGTAACGGTGTCGCCTGTTGTACCATCCACCGCAACCACTGGCCCCAGAGTGAGCCAGCAGCAGCCCCAAGCCACTGGGATCCGCTGCCCCACCTTCGACAGCAAGAGCCCCAGTCAAGTGGTGTTCAAGCCCCAGTGGCTAGGGAAGGGCTTCGGGGCCACAGGGGTGAGGGCCAGAGGTAGAGGAGGCAAGGGGGGCTTGTCCTCTTCACCACTCTCCGTCCAGGTTGGAAACAAGAATGCAGCCAATGAGAACAAGGGGCAGTCGGTCAAACAGAAGCAGAGAGACAAGGCACTAGTGGCTGAAGGCCGCTCCCCTCTGCAGATGCTCAAGGAGACCAACTCCCCCCGGGAGCAAGCAACACAGATGAAGCTGAAGATAtccaccccagacagacagaggctgggTCAGTTGGACCGGAGAGTCCTGACTGTGTCCATGGACAAGGAGAACCGATAGATGACTGTTGCAGAGGAACATGCACAAACACTAACTGGCCAGTGTATAGAATCTTGCCATTTTTCTATCTGTCTAATAACGAGCTTTTTTAAAGTGTACAGTCTCTTTTTAACTGACTTTTTCAAACTGCTAACAAATTATAATGTGTACATTGTTTTTGGAAGTGCCATCGATATGATTTGTCTTTATTTCAAGTGTCTGTATCATTGTATTTGCTATCCTGTCCTTTTATGTAAATAAATTTGCTTTAAATCTA
>XM_036947908.1
TTACCAATCTATCCACAATAATTGACATTAGCCATCTATCGTCATGGGATCCAGCGAGAGCAAGGTTGCTGTGGCCTCAACGCCCAAACATGACCCCAGCCATCGGATCAAACACGACCGTCTCTCTCAGCTTGTCGACCCACGGTCTCCATCTGTAGCCATTGACCGCACACCCATTCAGGTGGGTGGAACCGTCTCCTGTGTCCCAGTTGTGGAGAGTGTATGCTCCATTCTAGCCAGCGACCCTCGGTCACCCTCAGTCGGTGTCACCCGCACCCCAATGAAGGACTCCATGAGCGtgACAGTTAGCTCCTTCGCCCACCGCCTCAGTATGCTCCTCCACAGTGACTCTGTAGAAAGAGTTGCCCCTGTGCCCTTCAAGTTTCCCAACTTCAATGTGGAGGAAGAGGCCGTGGTAGAGGGAGAGTTAGGCTCCAGTGagccccttctctcccctcagccATCACAGGTCTCAGGTGACATGATTCAGCCCTCTCCCCAGAGCGTGGCTAGTCATATGCTTCTCATCCAGAGTCCCTTCGTTCTCGTGGGGGAAGCCCAGATAGACGTCGAAGCCGATTTCACTCTGGAGGAAGCCGAAGAGGCCAAGGAGTCTTCACTACACAAGCGCCTGAGTATGAGCTTGATCACCTGCCACGATGGTGTCGCCCCATCGCCGACCTTCGCCGAGGTGCACTACGACAGCCCTGCATCTCCTCTCCCTGAAAATGCTGCTGCTGAACTCCACAAGGAGGAACCTGACCATGCGAAAGCCCTTCCCTCGGTCACCTCTGACCCCGCACAACCTCTGACTCCCATGGCTGAACCATCCATCCCCACCATTACAGAGGTAACTGAAGTCACGGTTGCTACAGAGATTCTTAAAGTGGAGGTCCCAACACCAGTGGAGGAGCCAATGATGCCTGTAACGGTGTCGCCTGTTGTACCATCCACCGCAACCACTGGCCCCAGAGTGAGCCAGCAGCAGCCCCAAGCCACTGGGATCCGCTGCCCCACCTTCGACAGCAAGAGCCCCAGTCAAGTGGTGTTCAAGCCCCAGTGGCTAGGGAAGGGCTTCGGGGCCACAGGGGTGAGGGCCAGAGGTAGAGGAGGCAAGGGGGGCTTGTCCTCTTCACCACTCTCCGTCCAGGTTGGAAACAAGAATGCAGCCAATGAGAACAAGGGGCAGTCGGTCAAACAGAAGCAGAGAGACAAGGCACTAGTGGCTGAAGGCCGCTCCCCTCTGCAGATGCTCAAGGAGACCAACTCCCCCCGGGAGCAAGCAACACAGATGAAGCTGAAGATAtccaccccagacagacagaggctgggTCAGTTGGACCGGAGAGTCCTGACTGTGTCCATGGACAAGGAGAACCGATAGATGACTGTTGCAGAGGAACATGCACAAACACTAACTGGCCAGTGTATAGAATCTTGCCATTTTTCTATCTGTCTAATAACGAGCTTTTTTAAAGTGTACAGTCTCTTTTTAACTGACTTTTTCAAACTGCTAACAAATTATAATGTGTACATTGTTTTTGGAAGTGCCATCGATATGATTTGTCTTTATTTCAAGTGTCTGTATCATTGTATTTGCTATCCTGTCCTTTTATGTAAATAAATTTGCTTTAAATCTA

Function

NR:

description
cell division cycle-associated protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947907.1 False 1769 mRNA 0.52 6 39328460 39337579
XM_036947908.1 True 1640 mRNA 0.53 6 39328814 39337579

Neighbor

gene id symbol gene type direction distance location
LOC110489375 LOC106605093 coding upstream 8578 39298409 ~ 39319882 (+)
LOC110489358 LOC106605095 coding upstream 30396 39256426 ~ 39298064 (+)
LOC110489329 LOC106605098 coding upstream 72670 39236527 ~ 39255790 (+)
LOC118944148 NA coding upstream 94045 39234360 ~ 39234415 (+)
atp1a3 atp1a3 coding upstream 133176 39170273 ~ 39195284 (+)
LOC110489446 ubp5 coding downstream 28829 39366408 ~ 39378288 (+)
LOC110489493 LOC100169854 coding downstream 42013 39379592 ~ 39385031 (+)
LOC110501538 LOC100301666 coding downstream 66242 39403821 ~ 39412741 (+)
LOC110489499 LOC106605088 coding downstream 75877 39413456 ~ 39420001 (+)
LOC110489505 csn7a coding downstream 93027 39430606 ~ 39440426 (+)
G140757 NA non-coding upstream 2034 39326208 ~ 39326426 (+)
G140753 NA non-coding upstream 3272 39308669 ~ 39325188 (+)
G140658 NA non-coding upstream 96895 39230619 ~ 39231565 (+)
G140712 NA non-coding upstream 147699 39177779 ~ 39180761 (+)
G140707 NA non-coding upstream 159721 39168466 ~ 39168739 (+)
G140766 NA non-coding downstream 4203 39341782 ~ 39347457 (+)
G140771 NA non-coding downstream 11946 39349525 ~ 39349785 (+)
G140772 NA non-coding downstream 12557 39350136 ~ 39350359 (+)
G140792 NA non-coding downstream 65755 39403334 ~ 39403625 (+)
G139179 NA other upstream 1276716 38051359 ~ 38051744 (+)
G139101 NA other upstream 1384448 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1387746 37919735 ~ 37940714 (+)
G139004 NA other upstream 1504450 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 2926489 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2201716 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2630795 41968374 ~ 41969317 (+)
G144661 NA other downstream 3172751 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4393293 43730872 ~ 43731218 (+)
G146091 NA other downstream 4431128 43768707 ~ 43769162 (+)

Expression


Co-expression Network