LOC110489429 (LOC106605091)


Basic Information

Item Value
gene id LOC110489429
gene name LOC106605091
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39338189 ~ 39347511 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562147.2
ctctctctttgtctctctctttctccctctctcacccccctcaccctctctctctctctgtccatcgctGGATTTATCCCTTCATCCCTGATCTCTCTTCATCCGCTCCAATCCTCATCTGTTCCtcacaggagagagagtgtgtgagagagagatatagagagagacagagagagcaagagggtggAATATCCATTCTGTGTGTGACAGGAAAACTGAATAAAAAAACTGAAAGTCTAGTAACAGAAGAGGGGTAAACATATGACAACCAAACAGAGGGACCCTGAAAAGTGAGAACAGGTTAAGAAACCCACTGGAGAACTTCCTTATTTGgaTTACGTCTGCTCACCTGATTTCACTTCCTGTCTCCATCGGTGACAACGCCTACCAACCGTTGCCATGGGCGAAATGGAGGAGCTGCGAAAGGAGGCGGACAACCTCAAAGATCAGATCACTGAGGCCCGAAAGGTAGTGCAGGACACCACCCTGCAGGAGGCGGTTGCTGGGACGACGCTGGTGGGGCGTGTCCAGCTGAAGACCAGGAAGACGCTGAGGGGTCACCTGGCCAAGATCTATGCCATGCACTGGGGCACTGACACCaaGTTGTGTGTCAGTGCCTCTCAAGATGGAAAGCTGATAGTGTGGGACACCCTGACCACCAACAAGGTGAACGCAATCCCTCTGAAGTCCTCGTGGGTGATGACGTGTGCCTACGCGCCCTCAGGGAACATGGTGGCGTGTGGCGGTCTCGACAACATGTGCTCCATCTACAACCTCAAGGGCAAGGACGGCAACGTCAAGGTCATGCGTGAGCTGGCCGCGCACACAGGTTACCTGTCCTGCTGTCGTTTCCTTAACGACAGTGAGATCATCACCAGCTCTGGCGACTGCACTTGTATTCTATGGGACattgagacagggacagagaagaccATCTTCGCGGGCCACTTGGGTGACTGCATGTCCCTGGCCGTGTCCCCCGACTTCAAGATGTTCATCTCGGGGGCGTGTGACTTCACAGCCAAACTGTGGGACATCAGGGAAGCCACCTGCAGACAGACGTTCAGCGGCCACGAGAGTGACATCAACGCCATCGGGTTCTTCCCCAATGGTAATGCGGTTATAACGGGCTCAGACGATGCCACCTGTAAGCTGTACGACCTGAGGGCAGACCAGGAGCTCATCACCTACCAGGACTCGGGCATCATGTGTGGGGTGACCTCCCTCGCCGCGTCCCTCTCCGGCCGACTTCTCCTGGCCGGATACGATGACTTCAACGTCAACATCTGGGACATGCTTAAAGCCGAGAGAGTGGGAGTGCTGGCTGGTCATGACAACAGGGTGAGCTGCATCGGAGTATCCTCGGACGGAATGGCATGCTGCACAGGATCCTGGGACAGCTTCCTGAAGATATGGAACTGAGCCAGTCCTCTAGAGAACAGAGAATGAAAGACTaagaggagatagaggaagggTATCATGAAAAACTGGTAGATTGAAGAGGGGGGACTAGGAAGCCATGGGTTAGAGAGGTTATTTTTTATTGTGCCAAGTCTTATTCGATTTGAGAGGATTATGAGAAAGTCTCGTCTCTTCCTACTTCTAACTCAAGTTTAGAGTTGGGCGGGTGGGGGACTTTTGTAGAAAAGCATGGATTGTTGTATCAATGAAGGAATGATTTGTCAAGGTTAAAAACTGAATTCTAGCGTTATAGGAAATGCAGGAAAATATTCATGTCAAAAGAGCAGTTGCCAAAATGGAAACGGTAGAGAATTGGATGAAATAACAGGATAAGATAAATTTTAAAAATGACCACTGATAAGACTGTAGGTTTACAATAACTAGGTTACATACTTTTATATGAGGCGAGTTAAAATGTTTTGTCAGAGGATGAATGTGTAAGCATTAAAATTTGTGTCGAACAGA
>XM_021562142.2
tctctctctttgtctctctctttctccctctctcacccccctcaccctctctctctctctgtccatcgctGGATTTATCCCTTCATCCCTGATCTCTCTTCATCCGCTCCAATCCTCATCTGTTCCtcacaggagagagagtgtgtgagagagagatatagagagagacagagagagcaagagggtggAATATCCATTCTGTGTGTGACAGGAAAACTGAATAAAAAAACTGAAAGTCTAGTAACAGAAGAGGGGTAAACATATGACAACCAAACAGAGGGACCCTGAAAAGTGAGAACAGGTTAAGAAACCCACTGGAGAACTTCCTTATTTGgaTTACGTCTGCTCACCTGATTTCACTTCCTGTCTCCATCGGTGACAACGCCTACCAACCGTTGCCATGGGCGAAATGGAGGAGCTGCGAAAGGAGGCGGACAACCTCAAAGATCAGATCACTGAGGCCCGAAAGGTAGTGCAGGACACCACCCTGCAGGAGGCGGTTGCTGGGACGACGCTGGTGGGGCGTGTCCAGCTGAAGACCAGGAAGACGCTGAGGGGTCACCTGGCCAAGATCTATGCCATGCACTGGGGCACTGACACCaaTTGTAGCAAGTTGTGTGTCAGTGCCTCTCAAGATGGAAAGCTGATAGTGTGGGACACCCTGACCACCAACAAGGTGAACGCAATCCCTCTGAAGTCCTCGTGGGTGATGACGTGTGCCTACGCGCCCTCAGGGAACATGGTGGCGTGTGGCGGTCTCGACAACATGTGCTCCATCTACAACCTCAAGGGCAAGGACGGCAACGTCAAGGTCATGCGTGAGCTGGCCGCGCACACAGGTTACCTGTCCTGCTGTCGTTTCCTTAACGACAGTGAGATCATCACCAGCTCTGGCGACTGCACTTGTATTCTATGGGACattgagacagggacagagaagaccATCTTCGCGGGCCACTTGGGTGACTGCATGTCCCTGGCCGTGTCCCCCGACTTCAAGATGTTCATCTCGGGGGCGTGTGACTTCACAGCCAAACTGTGGGACATCAGGGAAGCCACCTGCAGACAGACGTTCAGCGGCCACGAGAGTGACATCAACGCCATCGGGTTCTTCCCCAATGGTAATGCGGTTATAACGGGCTCAGACGATGCCACCTGTAAGCTGTACGACCTGAGGGCAGACCAGGAGCTCATCACCTACCAGGACTCGGGCATCATGTGTGGGGTGACCTCCCTCGCCGCGTCCCTCTCCGGCCGACTTCTCCTGGCCGGATACGATGACTTCAACGTCAACATCTGGGACATGCTTAAAGCCGAGAGAGTGGGAGTGCTGGCTGGTCATGACAACAGGGTGAGCTGCATCGGAGTATCCTCGGACGGAATGGCATGCTGCACAGGATCCTGGGACAGCTTCCTGAAGATATGGAACTGAGCCAGTCCTCTAGAGAACAGAGAATGAAAGACTaagaggagatagaggaagggTATCATGAAAAACTGGTAGATTGAAGAGGGGGGACTAGGAAGCCATGGGTTAGAGAGGTTATTTTTTATTGTGCCAAGTCTTATTCGATTTGAGAGGATTATGAGAAAGTCTCGTCTCTTCCTACTTCTAACTCAAGTTTAGAGTTGGGCGGGTGGGGGACTTTTGTAGAAAAGCATGGATTGTTGTATCAATGAAGGAATGATTTGTCAAGGTTAAAAACTGAATTCTAGCGTTATAGGAAATGCAGGAAAATATTCATGTCAAAAGAGCAGTTGCCAAAATGGAAACGGTAGAGAATTGGATGAAATAACAGGATAAGATAAATTTTAAAAATGACCACTGATAAGACTGTAGGTTTACAATAACTAGGTTACATACTTTTATATGAGGCGAGTTAAAATGTTTTGTCAGAGGATGAATGTGTAAGCATTAAAATTTGTGTCGAACAGA

Function

NR:

description
guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3-like isoform X1

GO: NA

KEGG:

id description
K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562147.2 False 1926 mRNA 0.50 9 39338189 39347510
XM_021562142.2 True 1936 mRNA 0.50 10 39338189 39347511

Neighbor

gene id symbol gene type direction distance location
LOC110489325 tpi1b coding downstream 104420 39228812 ~ 39233769 (-)
LOC118939935 LOC106605099 coding downstream 117549 39218551 ~ 39220640 (-)
LOC110489287 LOC106605101 coding downstream 128683 39197666 ~ 39209506 (-)
LOC110489261 LOC106605105 coding downstream 354217 38975605 ~ 38983972 (-)
LOC110489249 LOC106605107 coding downstream 374409 38952824 ~ 38963780 (-)
LOC110489468 LOC106605089 coding upstream 3421 39350932 ~ 39365872 (-)
LOC100301666 LOC100301666 coding upstream 62737 39410248 ~ 39412570 (-)
LOC110489516 LOC106605085 coding upstream 94795 39442306 ~ 39449334 (-)
si:ch211-154o6.3 LOC106605084 coding upstream 101984 39449495 ~ 39465606 (-)
LOC110501545 NA coding upstream 140044 39487555 ~ 39497561 (-)
G141046 NA non-coding downstream 10800 39327110 ~ 39327389 (-)
G141003 LOC106605098 non-coding downstream 87078 39250265 ~ 39251111 (-)
G140997 LOC106605098 non-coding downstream 90018 39240917 ~ 39248171 (-)
G140963 NA non-coding downstream 141645 39196230 ~ 39196544 (-)
G140907 NA non-coding downstream 142908 39192136 ~ 39195281 (-)
G141061 NA non-coding upstream 41210 39388721 ~ 39388929 (-)
G141073 NA non-coding upstream 52112 39399623 ~ 39399857 (-)
G141077 LOC100136501 non-coding upstream 56546 39404057 ~ 39405450 (-)
G141079 NA non-coding upstream 73301 39420812 ~ 39421138 (-)
G141081 NA non-coding upstream 75323 39422834 ~ 39426434 (-)
G140879 NA other downstream 273771 39063862 ~ 39064418 (-)
G140479 NA other downstream 509994 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 1289523 38046700 ~ 38048666 (-)
G139231 NA other downstream 1585231 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1874431 37442359 ~ 37463839 (-)
G141363 LOC106605077 other upstream 416422 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 877111 40224622 ~ 40298333 (-)
G142918 NA other upstream 1515703 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 2367035 41714269 ~ 41730507 (-)
G145010 NA other upstream 3359307 42706818 ~ 42707279 (-)

Expression


Co-expression Network