LOC110501538 (LOC100301666)


Basic Information

Item Value
gene id LOC110501538
gene name LOC100301666
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39403821 ~ 39412741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947997.1
GCTACAAAATGAATTCTGGATTCCTTTCCATCGTTATTGCTTTGTTCATCTCTTCAACAGGGGCTGAAGATGTGGTGTATGGTCAGGTGGGAGGGACGGTCACACTCCCCAGATTGAAGTGGGGTTCAGATAAGGTGACGGTACAATGGTACTTTGGGATGGACCAAAAATCTTTGATATTCCGCAATACCCAGGGTCGAGAGATAATAGATCCAGAGTGGAAAGACAGGCTGTCTCTGTCCAAGACTGACTTCTCCCTGATCATCAACAAAATCAGACTGGAGGACTTCAAATCCTTCAAATGTGAACTGAAAGATTTCAGCCCAAAACAAATTACCTTAATCACCACATTCAGACTGTCCCGTGtgagTGTACAGCCAGTCTCTCCCCTGTTGGCTGGGAAGAATCTTAATCTGAAGTGTGACATAAAGGAAATAATTGAGGGGACACAGAGAAGATGGCTTAGTCCCCAGAAACAGGACCTGAACAAGGACAAGCGTGCCCAGATTGGAAATAACGGGGGCCTGACCGTAATGAATGTCACAGGCCAAGACAATGGAGAGTGGACCTGTGTGGTGACATACCAGGGCAGGGAAGCCTATGCCAACACCCCTGTTACTGTAATAGACCTCTCCCCTGCTCATCCACAGCCTATCTACacctccgtctcctccctctctcttctccatctgcCATGTTTCTTTTCCATTCCGCTTCCTCTATCCTGGTCAGACAGCCAGGAGAAGGGCATCCAGGGAGGCCGCTGGACCTTTACCCCAAGCCCAGCGGCAGGCTCCCTCACTGGGGTCGTCCAGACCCTCGTCAACCTCTCCCCGGGGCCTCCATTAGCCTGGGTGGCCAATCAGAAGAGAGGGCTGGATGTCTCAGCCCTGCAGAGGAAAAATCTAAACCTCTCCCTGTCAAAGAAAGGGGTGACGGAGGGGGACAGGGGCGACTACACCTGCGCTGTGGAGTTCCAGAGGGGGGACACCCTGAAGAGAGAAATGCGTGTGGAGGTGCTACAGGtgTTTACCTCTCCAGGTCCAGTGGCCTTTTTAGGTCAGGAGGTCAACCTCACCTGTACCCTGGGCCagcctctgacctctgacctggaaGTGAAATGGATCCCACCACatcactcctccctcctccctttagactcctccccccaccccacccttctCACCATCCCCGAAGCGACGTATGGAAATGGTGGGAGGTGGAGGTGTGAATTGTGGAGGAACAAAACCAAGCTGACGTCAGTGGAGATTACTCTGAAGATAGAGCGAGTCCCCATGGACGTGTGGCTGTTGGTCACCATCTGTGCCGCAGCCgtcatcttcatcctcctcctcatcctcactgTCATCCTCATCCGACGCCACAGACAGCGGGTGATGATGCCCAGACGTGGCAAACGCAGATTCTGCAACTGCCAAGACCCCAAACCAAAAGGATTCTACAGAAACTAGAGATATTGTACAGACCGGAATCCCTGTCAATGGACAATGTGTCTACTGTTTTGTCTTAGCTATTCTATTCTGACACAAAGAAACACCAAAATGACAAAAGAAGCAAGAAAGAAGATTTTTTCATGTGATGTTTGATCATTGATTTCACAAGTGTATATTGTCATGCTTTATGACCTATGATTGAGCTACAATTGAacaaatactgtatataaatatgtatagCTACTGTCACTTTTGTATTACTGTACACTGTATTACtgttccatgacatagactgtccaggttaatccaggtgaaagctatgtcacttgttaaattcaccaTGGGTTGTGTGCATGTGCCATTCAGAtgctgaatgggcaagacacaaaatgtaagtgtctttgaacggggtacttgtagtaggtgccaggcgcaccggtttgtgtcaagaactgcaacactctTGGGGTTTTCAcagtcaacagtttcctgtgtgtatcgcagtggaggctcctcagaggaggaagggggggacCATCCTCCTGAGTGAATGTCCTAAAAATTAAAATAGTGAAACAtaatttttaattttaaaaatgcAACTCAATACTAGGAAGGCGTTCCAAatttttggtatactcagtgGATATTGCATAGGACTGTTTTAGAGTCCATTATTTACTGAATATTTTATTAAGAGAATGGAAAACCGTCTTAATACTATAGTTTCTCACGGTTTCAGGTGGTGTGAGCAGACCGCTGCGTGATCAGGCTTGTTCCAAAGTTTTGTTGAATTGTTTGAATTAGTAACAGAGAAAATACAGGGGTTATTGTTGTTGTGTTATAGGACTGTCGAATAAAATGTTTGATTTCATTGAAATGATTGAATTAAACAAGCAGTGACTGAGGGGTGACTGATTGGCAGCTTTATTGAAATACCTTCAGTGGTGGGTGGACACCAACACAAGTAGATACCAACGGTCACTTCTTCATCTGTTTTGACTGATTACATTACCGTGACTGGGATTCAATCCAATGCACGTTAGGGAAATGCACATTGCGTTTGACTTTAAAAGGGAATTTACACTTGATTACCACCGCGTTTACACGGAATTTGAATTCCTAAAACATGGGGAAAATCGCATTTAAAATGCACATTGTCAGCAGTGCAACCCTACAA
>TU161760
CAAGCAGTGACTGAGGGGTGACTGATTGGCAGCTTTATTGAAATACCTTCAGTGGTGGGTGGACACCAACACAAGTAGATACCAACGGTCACTTCTTCATCTGTTTTGACTGATTACATTACCGTGACTGGGATTCAATCCAATGCACGTTAGGGAAATGCACATTGCGTTTGACTTTAAAAGGGAATTTACACTTGATTACCACCGCGTTTACACGGAATTTGAATTCCTAAAACATGGGGAAAATCGCATTTAAAATGCACATTGTCAGCAGTGCAACCCTACAATGCGCCTTCTATTGAATCCCTGCCACTCTAAGTTCATTTCATGGTCAGCGGTGTCTTTCACCCGCTGATTCAAGGAGAAGTAGTGGGGAAGGCATCCATTTGACAGATGCGGTGGTAGAGGAATTGACAGGGCACGTCGGACCAGGCATGAGTGTTACTCTGTAGGACCACACAGTCCTCACCTTCCAGCCCACCGGAGACATTGTTATCAGGCTCCGAGCTGTACGGTTGCCAGAAGCTACAGGGaaagggaggtagggggagagaaaaTATGACGGGTAGGATGGAATTGAagtcacagagagggagagcgataaGACAGAAGAAAAAAAGTTAAAAAGGAGGGGACAAATGGTGGAGAAAAAAGCAACAGATATTTTGAGTCAATGTTGTACGTGTCATGTTGAGATTGTTGAATGGGTTTGCAGACCCTACATACTTATTTGTGAGCGTTGTGTTGTCCACCCATCTCCagtccccctccatctctctgtctgataGGCCGATCCAGAAGTAGTTATTAAACCCACCAATCCTACTTGCCTCTTTTTCCAGGGCTTCCTCGAGCTCTTGCTGTGCAGGATGCTAAGGTGGCTGCCCATTGATGTACAATTGTCTCTGCTGCTCGGCCAGTCCATCTTGTCATTACTGAAGTAGTAACATTTTTCATTTACCAGTACATGAAGCCACCCCTCAGGACACCCTGTGAAATTCACCCTGTGGCAGAGCAGTTTTTTGCCAGACTGGCATAGTTATCACGTAGGCGGCTGTAGCGACGCAGCACAGTACTCAGATCCAACTTCAGGGCTGCCAACTCTTCCTCGGGGGTCTCCCGAGGTTGAGTGACATTTGACAGGGGCTCTGCAGCTGCCTGATTGGTGTTGATGGATACCAAGAGGCCAATCAGCACAAAGAGGATGGTCTGACACGTCAGAAGTCCTGCCCACTTCTTCCCCCCCTGGGAACCTGATTGGATTGATCAAAGAGAGAGCTCAACAGAGTTATATTATACAGAATACTGTGCATGTCAGTTAGGGGACAGTTTAACCTGACTAGAATTGAGGTGACAATTCGTATTCCAGCAACAGTTCTACATACAGGATGTGTTTTTTTACGTCTTTTAAATTAATTAACCTAAATATTGTAACAAAGTGACTTGCCCAAATTTGATACACACAAgtacgcacacgcacgcacgcacacacgcacatacacacacagtggtgtaGACCGAAAAGTTTATTTTACCTTGCTTAGAATGGTAGTTCTTCATGTTCCCTGTGTAATATCACTGGTACATGGTCAGTTAACCGTCCATAAATCGAATTTGTCTCTCTTTCCACTCAGAGTTGGTGTTATATACCGACGCggcgtgtgtttgtgagtgtagGCAATTGGTTGGAAAGTACAAATTGTGGAAATAACGTTTTGCTGGACCTGAGACAGATTTGAATGGGGAAAGTGAATCAATAGATCTGGTGCAATAGCAGAAAATCTGTCATGGAA
>TU161761
CAAGCAGTGACTGAGGGGTGACTGATTGGCAGCTTTATTGAAATACCTTCAGTGGTGGGTGGACACCAACACAAGTAGATACCAACGGTCACTTCTTCATCTGTTTTGACTGATTACATTACCGTGACTGGGATTCAATCCAATGCACGTTAGGGAAATGCACATTGCGTTTGACTTTAAAAGGGAATTTACACTTGATTACCACCGCGTTTACACGGAATTTGAATTCCTAAAACATGGGGAAAATCGCATTTAAAATGCACATTGTCAGCAGTGCAACCCTACAATGCGCCTTCTATTGAATCCCTGCCACTCTAAGTTCATTTCATGGTCAGCGGTGTCTTTCACCCGCTGATTCAAGGAGAAGTAGTGGGGAAGGCATCCATTTGACAGATGCGGTGGTAGAGGAATTGACAGGGCACGTCGGACCAGGCATGAGTGTTACTCTGTAGGACCACACAGTCCTCACCTTCCAGCCCACCGGAGACATTGTTATCAGGCTCCGAGCTGTACGGTTGCCAGAAGCTACAGGGaaagggaggtagggggagagaaaaTATGACGGGTAGGATGGAATTGAagtcacagagagggagagcgataaGACAGAAGAAAAAAAGTTAAAAAGGAGGGGACAAATGGTGGAGAAAAAAGCAACAGATATTTTGAGTCAATGTTGTACGTGTCATGTTGAGATTGTTGAATGGGTTTGCAGACCCTACATACTTATTTGTGAGCGTTGTGTTGTCCACCCATCTCCagtccccctccatctctctgtctgataGGCCGATCCAGAAGTAGTTATTAAACCCACCAATCCTACTTGCCTCTTTTTCCAGGGCTTCCTCGAGCTCTTGCTGTGCAGGATGCTAAGGTGGCTGCCCATTGATGTACAATTGTCTCTGCTGCTCGGCCAGTCCATCTTGTCATTACTGAAGTAGTAACATTTTTCATTTACCAGTACATGAAGCCACCCCTCAGGACACCCTGTGAAATTCACCACTGGCAGAGCAGTTTTTTGCCAGACTGGCATAGTTATCACGTAGGCGGCTGTAGCGACGCAGCACAGTACTCAGATCCAACTTCAGGGCTGCCAACTCTTCCTCGGGGGTCTCCCGAGGTTGAGTGACATTTGACAGGGGCTCTGCAGCTGCCTGATTGGTGTTGATGGATACCAAGAGGCCAATCAGCACAAAGAGGATGGTCTGACACGTCAGAAGTCCTGCCCACTTCTTCCCCCCCTGGTACCTTGCTTAGAATGGTAGTTCTTCATGTTCCCTGTGTAATATCACTGGTACATGGTCAGTTAACCGTCCATAAATCGAATTTGTCTCTCTTTCCACTCAGAGTTGGTGTTATATACCGACGCggcgtgtgtttgtgagtgtagGCAATTGGTTGGAAAGTACAAATTGTGGAAATAACGTTTTGCTGGACCTGAGACAGATTTGAATGGGGAAAGTGAATCAATAGATCTGGTGCAATAGCAGAAAATCTGTCATGGAA

Function

NR:

description
C type lectin receptor B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947997.1 False 2634 mRNA 0.46 9 39403821 39410519
TU161760 False 1793 lncRNA 0.42 3 39410233 39412741
TU161761 True 1509 lncRNA 0.45 4 39410233 39412741

Neighbor

gene id symbol gene type direction distance location
LOC110489493 LOC100169854 coding upstream 18790 39379592 ~ 39385031 (+)
LOC110489446 ubp5 coding upstream 25533 39366408 ~ 39378288 (+)
LOC110489418 LOC106605090 coding upstream 66242 39328460 ~ 39337579 (+)
LOC110489375 LOC106605093 coding upstream 83939 39298409 ~ 39319882 (+)
LOC110489358 LOC106605095 coding upstream 105757 39256426 ~ 39298064 (+)
LOC110489499 LOC106605088 coding downstream 2937 39413456 ~ 39420001 (+)
LOC110489505 csn7a coding downstream 20087 39430606 ~ 39440426 (+)
ubxn11 ubxn11 coding downstream 59135 39469654 ~ 39485394 (+)
LOC110489537 LOC106605082 coding downstream 89626 39500145 ~ 39520622 (+)
LOC110489572 LOC106605173 coding downstream 111044 39521563 ~ 39524931 (+)
G140792 NA non-coding upstream 196 39403334 ~ 39403625 (+)
G140772 NA non-coding upstream 53462 39350136 ~ 39350359 (+)
G140771 NA non-coding upstream 54036 39349525 ~ 39349785 (+)
G140766 NA non-coding upstream 56364 39341782 ~ 39347457 (+)
G140758 NA non-coding upstream 74244 39329325 ~ 39329577 (+)
G140793 NA non-coding downstream 11839 39422358 ~ 39422680 (+)
G140794 NA non-coding downstream 19580 39430099 ~ 39430309 (+)
G140809 NA non-coding downstream 27436 39437955 ~ 39438584 (+)
G140834 NA non-coding downstream 91568 39502087 ~ 39502310 (+)
G140804 NA non-coding downstream 105974 39516493 ~ 39550773 (+)
G139179 NA other upstream 1352077 38051359 ~ 38051744 (+)
G139101 NA other upstream 1459809 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1463107 37919735 ~ 37940714 (+)
G139004 NA other upstream 1579811 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 3001850 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2128776 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2557855 41968374 ~ 41969317 (+)
G144661 NA other downstream 3099811 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4320353 43730872 ~ 43731218 (+)
G146091 NA other downstream 4358188 43768707 ~ 43769162 (+)

Expression


Co-expression Network