LOC110489499 (LOC106605088)


Basic Information

Item Value
gene id LOC110489499
gene name LOC106605088
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39413456 ~ 39420001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948019.1
acacacacacgctctcctGCCTCATCCCCCTATCACACAGTCCTTCTGGCCAGATTCAGCGAGAGCaaaaagagagccagagagacagagccagagagccagagccagagagagaccaagagtaAGCAGGTTTGATGCAATACTAAAAGAACTGCCAGTGAATCTCTGGAGGAAGAACAATAAATACTGAGAAAACTATTTGATGGAACAGAATTGCGAAATCAACTCCCatcccagctgtttggaattacAAACTTTATTTCCCAGCAGTGACTTTATTTACCGTTAGTTACAAAGTCGGGAGATTCTGCAATAGTTGGTATAAGTAAGTTAAACAGTGATTGTGGTGAGAAGAGCTGGTGAAGAACTGAAACTTCAATCATGGAGGTAGAGAACTATACCAGTCTACACGAGTTTACTGAGGACATATCCTCCAGAGGAAACAAGCCTATCCTGAACAACCacacaccacccctctccctcactcttcctCGTCATGCCTTTTTGGGCATGCAGAATGtgttgaGCAGGCCGTTACCTAGTGTTCCCCTGGAGACAGCATCTCTGACCCTGAAGCTGAACTCAGTTCGAGGACGTTATGTCCGTCTCTGTGATGACTACTCCAAACTGGGCCAGAGCTGCTCAAAGACAGTAAGTAAGTGTAGGGAGTGTCCTGAGGGCTGGATTCATGTAGATGAGAAATGTTACTCCTTCAGTAATGACAAGATGGACTGGCCGAGCAGCAGAGACAGTTGTACTTCCCTGGGCAGCCACCTTACCATCCTGCACAGCAAGGAACAGCATGACGCTCTGGAAAAAGAGGCCCGGAGGATTGGCGGGTTTGACTACCACTTCTGGATTGGCCTATCAGATATAGAGAAGGAAGGGGATTGGAGATGGgtggacaacacaacactgacGAATAAgTATTGGAATGAGTATAGCTCTGAGCCTGACAATCATCACTCAGGAGGATCACACGGGGAGGACTGTGCCACCCTGGACAGCCATTCGCAGACCTGGTTTGACGTACCGTGTGACCACATCTACAAACGCATTTGTCAGATGGATGCCATCCGGCTAGACTGAATCACAGGACTTAAACTAAGCCATGAATTTCCCAAttatctagatctactgtccatgCATTCATGAATGATGGCAATGTTTTCTTAAATAGCTTATCCTTTTTATGTCTTTCAAGCGATTTGAGATGTTTTAGTGCAATGAAAAGCGCTATAAAAGTGAAATGATTATTCTTACTGGAAGCATCAGAACTAGAAACTAAACTAGGTTATGGGTCAGATTTACTCAACTACACTGCCAAGTGTGTGTATTACTTTGTATTTTTTCAGAAACCATGAAACAAAATGGGACAGAAAAGGTTAAGAGAAGGGCTAAGATATAGAATGACAAGAGGAGATAAAGATAGTTTTGTGGTATAGCTAGTTTCATGAAATGTTCATTCCCTACTCAAAATAATAGATGCAAACATTTTGCAAATCTGGCACCTTCTGCAAGGAGAATTTCAATGAATGCACTCAATTTAGTAAATCAGTTAATGCAATCAAGGAGGTAGATGCTCTAATCAACTCTGCTGCTTGCCAAACTGATTGCTGGGATACTTTTGAGCAATCTGAGTGCTTTTTTTTATACGTGTGTGACCTGTACATAAATCTCCCAAATATTATGTATTGCTGCACTAACCATGAAAATTAATTCCTGAGAGtcaataaaactgtattttcaaATGA
>XM_036948029.1
cacacacgctctcctGCCTCATCCCCCTATCACACAGTCCTTCTGGCCAGATTCAGCGAGAGCaaaaagagagccagagagacagagccagagagccagagccagagagagaccaagagtaAGCAGGTTTGATGCAATACTAAAAGAACTGCCAGTGAATCTCTGGAGGAAGAACAATAAATACTGAGAAAACTATTTGATGGAACAGAATTGCGAAATCAACTCCCatcccagctgtttggaattacAAACTTTATTTCCCAGCAGTGACTTTATTTACCGTTAGTTACAAAGTCGGGAGATTCTGCAATAGTTGGTATAAGTAAGTTAAACAGTGATTGTGGTGAGAAGAGCTGGTGAAGAACTGAAACTTCAATCATGGAGGTAGAGAACTATACCAGTCTACACGAGTTTACTGAGGACATATCCTCCAGAGGAAACAAGCCTATCCTGAACAACCacatgttgaGCAGGCCGTTACCTAGTGTTCCCCTGGAGACAGCATCTCTGACCCTGAAGCTGAACTCAGTTCGAGGACGTTATGTCCGTCTCTGTGATGACTACTCCAAACTGGGCCAGAGCTGCTCAAAGACAGTAAGTAAGTGTAGGGAGTGTCCTGAGGGCTGGATTCATGTAGATGAGAAATGTTACTCCTTCAGTAATGACAAGATGGACTGGCCGAGCAGCAGAGACAGTTGTACTTCCCTGGGCAGCCACCTTACCATCCTGCACAGCAAGGAACAGCATGACGCTCTGGAAAAAGAGGCCCGGAGGATTGGCGGGTTTGACTACCACTTCTGGATTGGCCTATCAGATATAGAGAAGGAAGGGGATTGGAGATGGgtggacaacacaacactgacGAATAAgTATTGGAATGAGTATAGCTCTGAGCCTGACAATCATCACTCAGGAGGATCACACGGGGAGGACTGTGCCACCCTGGACAGCCATTCGCAGACCTGGTTTGACGTACCGTGTGACCACATCTACAAACGCATTTGTCAGATGGATGCCATCCGGCTAGACTGAATCACAGGACTTAAACTAAGCCATGAATTTCCCAAttatctagatctactgtccatgCATTCATGAATGATGGCAATGTTTTCTTAAATAGCTTATCCTTTTTATGTCTTTCAAGCGATTTGAGATGTTTTAGTGCAATGAAAAGCGCTATAAAAGTGAAATGATTATTCTTACTGGAAGCATCAGAACTAGAAACTAAACTAGGTTATGGGTCAGATTTACTCAACTACACTGCCAAGTGTGTGTATTACTTTGTATTTTTTCAGAAACCATGAAACAAAATGGGACAGAAAAGGTTAAGAGAAGGGCTAAGATATAGAATGACAAGAGGAGATAAAGATAGTTTTGTGGTATAGCTAGTTTCATGAAATGTTCATTCCCTACTCAAAATAATAGATGCAAACATTTTGCAAATCTGGCACCTTCTGCAAGGAGAATTTCAATGAATGCACTCAATTTAGTAAATCAGTTAATGCAATCAAGGAGGTAGATGCTCTAATCAACTCTGCTGCTTGCCAAACTGATTGCTGGGATACTTTTGAGCAATCTGAGTGCTTTTTTTTATACGTGTGTGACCTGTACATAAATCTCCCAAATATTATGTATTGCTGCACTAACCATGAAAATTAATTCCTGAGAGtcaataaaactgtattttcaaATGA
>XM_036948010.1
cacgctctcctGCCTCATCCCCCTATCACACAGTCCTTCTGGCCAGATTCAGCGAGAGCaaaaagagagccagagagacagagccagagagccagagccagagagagaccaagagtaAGCAGGTTTGATGCAATACTAAAAGAACTGCCAGTGAATCTCTGGAGGAAGAACAATAAATACTGAGAAAACTATTTGATGGAACAGAATTGCGAAATCAACTCCCatcccagctgtttggaattacAAACTTTATTTCCCAGCAGTGACTTTATTTACCGTTAGTTACAAAGTCGGGAGATTCTGCAATAGTTGGTATAAGTAAGTTAAACAGTGATTGTGGTGAGAAGAGCTGGTGAAGAACTGAAACTTCAATCATGGAGGTAGAGAACTATACCAGTCTACACGAGTTTACTGAGGACATATCCTCCAGAGGAAACAAGCCTATCCTGAACAACCacaGCGCCCAGGGGCTGAAGAGGGGGTCAGAGTGTCTCAGAGGTCAGACAGCCCTCTTTGTGCTGATTGGTCTATTGGCCTCCATCTGTGCCAACATCGCTCTGAGCGTGCTCTtgttgaGCAGGCCGTTACCTAGTGTTCCCCTGGAGACAGCATCTCTGACCCTGAAGCTGAACTCAGTTCGAGGACGTTATGTCCGTCTCTGTGATGACTACTCCAAACTGGGCCAGAGCTGCTCAAAGACAGTAAGTAAGTGTAGGGAGTGTCCTGAGGGCTGGATTCATGTAGATGAGAAATGTTACTCCTTCAGTAATGACAAGATGGACTGGCCGAGCAGCAGAGACAGTTGTACTTCCCTGGGCAGCCACCTTACCATCCTGCACAGCAAGGAACAGCATGACGCTCTGGAAAAAGAGGCCCGGAGGATTGGCGGGTTTGACTACCACTTCTGGATTGGCCTATCAGATATAGAGAAGGAAGGGGATTGGAGATGGgtggacaacacaacactgacGAATAAgTATTGGAATGAGTATAGCTCTGAGCCTGACAATCATCACTCAGGAGGATCACACGGGGAGGACTGTGCCACCCTGGACAGCCATTCGCAGACCTGGTTTGACGTACCGTGTGACCACATCTACAAACGCATTTGTCAGATGGATGCCATCCGGCTAGACTGAATCACAGGACTTAAACTAAGCCATGAATTTCCCAAttatctagatctactgtccatgCATTCATGAATGATGGCAATGTTTTCTTAAATAGCTTATCCTTTTTATGTCTTTCAAGCGATTTGAGATGTTTTAGTGCAATGAAAAGCGCTATAAAAGTGAAATGATTATTCTTACTGGAAGCATCAGAACTAGAAACTAAACTAGGTTATGGGTCAGATTTACTCAACTACACTGCCAAGTGTGTGTATTACTTTGTATTTTTTCAGAAACCATGAAACAAAATGGGACAGAAAAGGTTAAGAGAAGGGCTAAGATATAGAATGACAAGAGGAGATAAAGATAGTTTTGTGGTATAGCTAGTTTCATGAAATGTTCATTCCCTACTCAAAATAATAGATGCAAACATTTTGCAAATCTGGCACCTTCTGCAAGGAGAATTTCAATGAATGCACTCAATTTAGTAAATCAGTTAATGCAATCAAGGAGGTAGATGCTCTAATCAACTCTGCTGCTTGCCAAACTGATTGCTGGGATACTTTTGAGCAATCTGAGTGCTTTTTTTTATACGTGTGTGACCTGTACATAAATCTCCCAAATATTATGTATTGCTGCACTAACCATGAAAATTAATTCCTGAGAGtcaataaaactgtattttcaaATGA

Function

NR:

description
C-type lectin domain family 4 member E-like

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948019.1 False 1754 mRNA 0.43 6 39413456 39420001
XM_036948029.1 False 1697 mRNA 0.42 5 39413459 39420001
XM_036948010.1 True 1804 mRNA 0.43 6 39413463 39420001

Neighbor

gene id symbol gene type direction distance location
LOC110501538 LOC100301666 coding upstream 2937 39403821 ~ 39412741 (+)
LOC110489493 LOC100169854 coding upstream 28425 39379592 ~ 39385031 (+)
LOC110489446 ubp5 coding upstream 35168 39366408 ~ 39378288 (+)
LOC110489418 LOC106605090 coding upstream 75877 39328460 ~ 39337579 (+)
LOC110489375 LOC106605093 coding upstream 93574 39298409 ~ 39319882 (+)
LOC110489505 csn7a coding downstream 10605 39430606 ~ 39440426 (+)
ubxn11 ubxn11 coding downstream 49653 39469654 ~ 39485394 (+)
LOC110489537 LOC106605082 coding downstream 80144 39500145 ~ 39520622 (+)
LOC110489572 LOC106605173 coding downstream 101562 39521563 ~ 39524931 (+)
LOC110489581 LOC106605172 coding downstream 107601 39527602 ~ 39530858 (+)
G140792 NA non-coding upstream 9831 39403334 ~ 39403625 (+)
G140772 NA non-coding upstream 63097 39350136 ~ 39350359 (+)
G140771 NA non-coding upstream 63671 39349525 ~ 39349785 (+)
G140766 NA non-coding upstream 65999 39341782 ~ 39347457 (+)
G140793 NA non-coding downstream 2357 39422358 ~ 39422680 (+)
G140794 NA non-coding downstream 10098 39430099 ~ 39430309 (+)
G140809 NA non-coding downstream 17954 39437955 ~ 39438584 (+)
G140834 NA non-coding downstream 82086 39502087 ~ 39502310 (+)
G140804 NA non-coding downstream 96492 39516493 ~ 39550773 (+)
G139179 NA other upstream 1361712 38051359 ~ 38051744 (+)
G139101 NA other upstream 1469444 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1472742 37919735 ~ 37940714 (+)
G139004 NA other upstream 1589446 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 3011485 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2119294 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2548373 41968374 ~ 41969317 (+)
G144661 NA other downstream 3090329 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4310871 43730872 ~ 43731218 (+)
G146091 NA other downstream 4348706 43768707 ~ 43769162 (+)

Expression


Co-expression Network