LOC110489505 (csn7a)


Basic Information

Item Value
gene id LOC110489505
gene name csn7a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39430606 ~ 39440426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948069.1
agtCCCTTGTCAGTCAAGACAAACACTACCCTCCTCCTTTTCACGTTTCGTCCaatgagcagggatgttctccTTTGTTGTCAAACGTGCACTGACCGCGGAACTGGGCGATTCGGGGGACAGGCTATCAACTTGAGTTTGCTTACAAATAAGatggaggtagagcagctcctctctctctcaggcccgGCGTTGGCCCAGGCCATAAGCTCTCTGCTGGAGACACCAGGCCTCTACGTGTTCTCAGACATCCTTGAGCTGCCCAACGTCagagagCTGGAGACAGGCCCGCACGCACCAGTGTATCAGCTACTCAACCTCTTCGCCTATGGAACCTACTGTGACTATAAAGAGAGGGCAGCCTCTCTCCCAGAGTTGACCCCAGCTCAGAGGAATAAACTCCGTCACCTCTCCATCATCAGTCTGGCATCCAATCTCAAGTGCCTGCCCTACTCTctgctcctgcagcagctggagCTGAAGAACGTGCGGGAGCTGGAGGACCTGCTGATTGAGGCGGTCTACTGTGACATCATTCAGGGCAAGCTGGACCAGAGGAACCAGCAGGTGGAGGTGGACTGCAGCGTGGGCCGAGACCTGGGGCCCAACGAGCTGCCCAACATAGCAAACACACTGCAGGAGTGgtgttcAGGATGTGAGGCGGTCCTGTGTGGGATCGAGGAGCAGGTAACCAGAGCCAACCAATACAGAGAGAGCCAGCTGAAGGTCAAAGTTCAGGTGGAGACAGAGgTGTCAAACCTCCAGAAAACGCTAAAGGCCAGCTCCGCCTCCCCGTCGTCCGGCCCCGCTGCCGCTGGAGCCGCATCCAATCAGGATGCAGACCAGCCGGCCGAGCCACGAGACCCCGCCTCCTCTCAGGAACCACGGCAACCGGGCAAGAAGAGTTCAAAGGTCAAAGGGGTCCCGGCAGAGGTGTGGTTCAAGCCGAGGCTCCGTGGAAGTGGGAAGATCTGGTCCAAGTCCAACTGAaggcagagatgcagagagaccCGGGAAAAACCCCCACTGATCCActgtcagatggatggacagacacATAGACCCACACAGACTCATAGACCGATAATGTGACCAATGCACAGACAACACACtaagatttacacacacacatccatgcacgcgcatacacacacacactgtgtgtgtgtgtatgtctgtatatatgtatatacagacactgagtcagacagacacacttgCAGCGTCTGACACCCATTCTGATAGGTGTGTACACACAACCAGACAGACGGACTATCTGCACTGTGTATATACACAGACCCAAACCCATTCTAAcatgtacacagagagagacagactgagtaTAATCTTTTCTGGGCAGAGCTTCGCTGCTGTCTGTATTATCAAGAGAATCAGAGCCACAAGCAGTGAAACTGAATGTGTGTATTTGATGTGTGTACTCTGTGTTacactttttgtttgtttgtatttttttctgcTGAGGATTGAGTTGAGACGTATAAAATCAGGATATTAATTGTTGGTAATAAATTGAACCCCCTCTATTCA
>XM_036948079.1
gtCCCTTGTCAGTCAAGACAAACACTACCCTCCTCCTTTTCACGTTTCGTCCaatgagcagggatgttctccTTTGTTGTCAAACGTGCACTGACCGCGGAACTGGGCGATTCGGGGGACAGGCTATCAACTTGAGTTTGCTTACAAATAAGatggaggtagagcagctcctctctctctcaggcccgGCGTTGGCCCAGGCCATAAGCTCTCTGCTGGAGACACCAGGCCTCTACGTGTTCTCAGACATCCTTGAGCTGCCCAACGTCagagagCTGGAGACAGGCCCGCACGCACCAGTGTATCAGCTACTCAACCTCTTCGCCTATGGAACCTACTGTGACTATAAAGAGAGGGCAGCCTCTCTCCCAGAGTTGACCCCAGCTCAGAGGAATAAACTCCGTCACCTCTCCATCATCAGTCTGGCATCCAATCTCAAGTGCCTGCCCTACTCTctgctcctgcagcagctggagCTGAAGAACGTGCGGGAGCTGGAGGACCTGCTGATTGAGGCGGTCTACTGTGACATCATTCAGGGCAAGCTGGACCAGAGGAACCAGCAGGTGGAGGTGGACTGCAGCGTGGGCCGAGACCTGGGGCCCAACGAGCTGCCCAACATAGCAAACACACTGCAGGAGTGgtgttcAGGATGTGAGGCGGTCCTGTGTGGGATCGAGGAGCAGGTAACCAGAGCCAACCAATACAGAGAGAGCCAGCTGAAGGTCAAAGTTCAGGTGGAGACAGAGgTGTCAAACCTCCAGAAAACGCTAAAGGCCAGCTCCGCCTCCCCGTCGTCCGGCCCCGCTGCCGCTGGAGCCGCATCCAATCAGGATGCAGACCAGCCGGCCGAGCCACGAGACCCCGCCTCCTCTCAGGAACCACGGCAACCGGGCAAGAAGAGTTCAAAGGTCAAAGGGCTCCGTGGAAGTGGGAAGATCTGGTCCAAGTCCAACTGAaggcagagatgcagagagaccCGGGAAAAACCCCCACTGATCCActgtcagatggatggacagacacATAGACCCACACAGACTCATAGACCGATAATGTGACCAATGCACAGACAACACACtaagatttacacacacacatccatgcacgcgcatacacacacacactgtgtgtgtgtgtatgtctgtatatatgtatatacagacactgagtcagacagacacacttgCAGCGTCTGACACCCATTCTGATAGGTGTGTACACACAACCAGACAGACGGACTATCTGCACTGTGTATATACACAGACCCAAACCCATTCTAAcatgtacacagagagagacagactgagtaTAATCTTTTCTGGGCAGAGCTTCGCTGCTGTCTGTATTATCAAGAGAATCAGAGCCACAAGCAGTGAAACTGAATGTGTGTATTTGATGTGTGTACTCTGTGTTacactttttgtttgtttgtatttttttctgcTGAGGATTGAGTTGAGACGTATAAAATCAGGATATTAATTGTTGGTAATAAATTGAACCCCCTCTATTCA
>XM_036948088.1
CAAACACTACCCTCCTCCTTTTCACGTTTCGTCCaatgagcagggatgttctccTTTGTTGTCAAACGTGCACTGACCGCGGAACTGGGCGATTCGGGGGACAGGCTATCAACTTGAGTTTGCTTACAAATAAGCTCCTGCACATactctcactctgtctttctcgctctctcagatggaggtagagcagctcctctctctctcaggcccgGCGTTGGCCCAGGCCATAAGCTCTCTGCTGGAGACACCAGGCCTCTACGTGTTCTCAGACATCCTTGAGCTGCCCAACGTCagagagCTGGAGACAGGCCCGCACGCACCAGTGTATCAGCTACTCAACCTCTTCGCCTATGGAACCTACTGTGACTATAAAGAGAGGGCAGCCTCTCTCCCAGAGTTGACCCCAGCTCAGAGGAATAAACTCCGTCACCTCTCCATCATCAGTCTGGCATCCAATCTCAAGTGCCTGCCCTACTCTctgctcctgcagcagctggagCTGAAGAACGTGCGGGAGCTGGAGGACCTGCTGATTGAGGCGGTCTACTGTGACATCATTCAGGGCAAGCTGGACCAGAGGAACCAGCAGGTGGAGGTGGACTGCAGCGTGGGCCGAGACCTGGGGCCCAACGAGCTGCCCAACATAGCAAACACACTGCAGGAGTGgtgttcAGGATGTGAGGCGGTCCTGTGTGGGATCGAGGAGCAGGTAACCAGAGCCAACCAATACAGAGAGAGCCAGCTGAAGGTCAAAGTTCAGGTGGAGACAGAGgTGTCAAACCTCCAGAAAACGCTAAAGGCCAGCTCCGCCTCCCCGTCGTCCGGCCCCGCTGCCGCTGGAGCCGCATCCAATCAGGATGCAGACCAGCCGGCCGAGCCACGAGACCCCGCCTCCTCTCAGGAACCACGGCAACCGGGCAAGAAGAGTTCAAAGGTCAAAGGGGTCCCGGCAGAGGTGTGGTTCAAGCCGAGGCTCCGTGGAAGTGGGAAGATCTGGTCCAAGTCCAACTGAaggcagagatgcagagagaccCGGGAAAAACCCCCACTGATCCActgtcagatggatggacagacacATAGACCCACACAGACTCATAGACCGATAATGTGACCAATGCACAGACAACACACtaagatttacacacacacatccatgcacgcgcatacacacacacactgtgtgtgtgtgtatgtctgtatatatgtatatacagacactgagtcagacagacacacttgCAGCGTCTGACACCCATTCTGATAGGTGTGTACACACAACCAGACAGACGGACTATCTGCACTGTGTATATACACAGACCCAAACCCATTCTAAcatgtacacagagagagacagactgagtaTAATCTTTTCTGGGCAGAGCTTCGCTGCTGTCTGTATTATCAAGAGAATCAGAGCCACAAGCAGTGAAACTGAATGTGTGTATTTGATGTGTGTACTCTGTGTTacactttttgtttgtttgtatttttttctgcTGAGGATTGAGTTGAGACGTATAAAATCAGGATATTAATTGTTGGTAATAAATTGAACCCCCTCTATTCA

Function

NR:

description
COP9 signalosome complex subunit 7a-like

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12180 COPS7, CSN7; COP9 signalosome complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948069.1 False 1548 mRNA 0.52 9 39430606 39440426
XM_036948079.1 False 1517 mRNA 0.52 8 39430607 39440426
XM_036948088.1 True 1570 mRNA 0.52 9 39430625 39440426

Neighbor

gene id symbol gene type direction distance location
LOC110489499 LOC106605088 coding upstream 10605 39413456 ~ 39420001 (+)
LOC110501538 LOC100301666 coding upstream 20087 39403821 ~ 39412741 (+)
LOC110489493 LOC100169854 coding upstream 45575 39379592 ~ 39385031 (+)
LOC110489446 ubp5 coding upstream 52318 39366408 ~ 39378288 (+)
LOC110489418 LOC106605090 coding upstream 93027 39328460 ~ 39337579 (+)
ubxn11 ubxn11 coding downstream 29228 39469654 ~ 39485394 (+)
LOC110489537 LOC106605082 coding downstream 59719 39500145 ~ 39520622 (+)
LOC110489572 LOC106605173 coding downstream 81137 39521563 ~ 39524931 (+)
LOC110489581 LOC106605172 coding downstream 87176 39527602 ~ 39530858 (+)
LOC110489590 LOC106605080 coding downstream 100280 39540706 ~ 39547363 (+)
G140794 NA non-coding upstream 297 39430099 ~ 39430309 (+)
G140793 NA non-coding upstream 7926 39422358 ~ 39422680 (+)
G140792 NA non-coding upstream 26981 39403334 ~ 39403625 (+)
G140772 NA non-coding upstream 80247 39350136 ~ 39350359 (+)
G140834 NA non-coding downstream 61661 39502087 ~ 39502310 (+)
G140804 NA non-coding downstream 76067 39516493 ~ 39550773 (+)
G141146 NA non-coding downstream 120453 39560879 ~ 39561194 (+)
G141148 NA non-coding downstream 122009 39562435 ~ 39562737 (+)
G141226 NA non-coding downstream 255935 39696361 ~ 39699522 (+)
G139179 NA other upstream 1378862 38051359 ~ 38051744 (+)
G139101 NA other upstream 1486594 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1489892 37919735 ~ 37940714 (+)
G139004 NA other upstream 1606596 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 3028635 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2098869 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2527948 41968374 ~ 41969317 (+)
G144661 NA other downstream 3069904 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4290446 43730872 ~ 43731218 (+)
G146091 NA other downstream 4328281 43768707 ~ 43769162 (+)

Expression


Co-expression Network