LOC110489572 (LOC106605173)


Basic Information

Item Value
gene id LOC110489572
gene name LOC106605173
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39521563 ~ 39524931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562306.2
GAGAAGTAGTTTTTTGCTAAAAAAGCTATTTTCCCATTTTAATTGAAATCTAAGATACTTAACTGTTACCAAGAAATGAattgatattgatataacaacGTCTGCATTGGGCATTTAATTAATATCCAGGCTGGCTTTGTGAGATTTGTTGCATGACTGCTTTGCAGGCCGTCGAACGCGGCCGCCATACGCGCCTACGCATTTTCGTGATGTCAGTTGAGCAGCGACAGGCTACGGCACAGTGTTAAAATTACTGATGGCGCAGGAGGCGGACGAAATAGATATAATGATTAATTATCACGGGGGTTTCGAAAAAATAGACCGGAAAAACAGCCGTTATCCTTATTGCGTCGTTTGGACACCTATTCCAATACTGTCGTGGTTGCTCCCCTTCATTGGTCACATGGGGATCTGTACTTCTGCAGGCGTGATAAGAGACTTCGCTGGATCGTActtagtgtctGAAGATAATATGGCCTTTGGAAGACCAACAAAGTACTGGAAGCTTGATGTTGATAAGGTGTGTGGCACTGGCTCAGCTGCCTGGGACAAGGCAGTGCAAGACGCATCGGAGGAGTACAAATGCAGGCCGCACAACCTCTGCTGTGATAACTGCCACTCCCATGTGGCCCTGGCCCTTAACCTCATGCGCTACGACAACAGAACGTCCTGGAACATGGTCAACCTATGCCTGCGGTCCCTTATCCACGGCAAGCATGTCAGCTGTGTGTCGTTCCTCAAGACCTGGCTGCCCTTCCTTATGTTGACTGGAGCCCTCGTCACCTTCATCCTAACGCTCAACCTGCACTGACCACACAAGGGAcacggagagggagacggaggggagaGATAATACAAGGGATTTTCCTGCTCCGTTGTAATCATAAAAAGTGAAAGAAGAAGAATAAACGTTTCGATGGGACACTTCTTTGTGCAGTGCTAACATTCACACTCTCATGAGGGCAGTTATGTCCAGCTGTTCTGGCTTGTTTCGAAGTACCTTTTACTAGATTCAGAAAGGAATGTCATATAAATGAATGTTTGGCTTGGGATAGTCAtaaccatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttaaggcttcaaacataaagatataaaactgtatt

Function

NR:

description
transmembrane protein 222-like

GO: NA

KEGG:

id description
K20726 TMEM222; transmembrane protein 222

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562306.2 True 1157 mRNA 0.46 6 39521563 39524931

Neighbor

gene id symbol gene type direction distance location
LOC110489537 LOC106605082 coding upstream 941 39500145 ~ 39520622 (+)
ubxn11 ubxn11 coding upstream 36169 39469654 ~ 39485394 (+)
LOC110489505 csn7a coding upstream 81137 39430606 ~ 39440426 (+)
LOC110489499 LOC106605088 coding upstream 101562 39413456 ~ 39420001 (+)
LOC110501538 LOC100301666 coding upstream 111044 39403821 ~ 39412741 (+)
LOC110489581 LOC106605172 coding downstream 2671 39527602 ~ 39530858 (+)
LOC110489590 LOC106605080 coding downstream 15775 39540706 ~ 39547363 (+)
znf407 LOC106605077 coding downstream 44554 39569485 ~ 39766378 (+)
LOC110489609 LOC106605074 coding downstream 296949 39821880 ~ 39862520 (+)
LOC110489640 LOC106583530 coding downstream 591027 40115958 ~ 40292372 (+)
G140834 NA non-coding upstream 19253 39502087 ~ 39502310 (+)
G140809 NA non-coding upstream 82979 39437955 ~ 39438584 (+)
G140794 NA non-coding upstream 91254 39430099 ~ 39430309 (+)
G140793 NA non-coding upstream 98883 39422358 ~ 39422680 (+)
G141146 NA non-coding downstream 35948 39560879 ~ 39561194 (+)
G141148 NA non-coding downstream 37504 39562435 ~ 39562737 (+)
G141226 NA non-coding downstream 171430 39696361 ~ 39699522 (+)
G141245 NA non-coding downstream 200232 39725163 ~ 39725428 (+)
G141248 NA non-coding downstream 203829 39728760 ~ 39728997 (+)
G139179 NA other upstream 1469819 38051359 ~ 38051744 (+)
G139101 NA other upstream 1577551 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1580849 37919735 ~ 37940714 (+)
G139004 NA other upstream 1697553 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 3119592 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2014364 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2443443 41968374 ~ 41969317 (+)
G144661 NA other downstream 2985399 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4205941 43730872 ~ 43731218 (+)
G146091 NA other downstream 4243776 43768707 ~ 43769162 (+)

Expression


Co-expression Network