LOC110489581 (LOC106605172)


Basic Information

Item Value
gene id LOC110489581
gene name LOC106605172
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39527602 ~ 39530858 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562317.2
TCAAGCTAACAACTTGCCGGTCCTGTTGCTCAGCAGACGAAACATCCTTCTCACTCAATGCAGACACAAACCATTGGGCTATCATTTGGCACCATCTAAAGAAAGGCTAACACCTCATTATACCGTTATGCCGGAGTCTTGAGTTTTTTTCCCTCCTTGATGTGCATGACATGGCGTAATATGACTCACCGTTAACTGCTCCTTCTGCATATTCTGGTATTTATCAGTTTATAACGTTTCTGTTGAGTTATGCATAATTTGGTAATCCTTGTACTTTTTGGTGCGCTACTCTGTGCGCCCCACCAGTGCTTGGAGTGCCCATCAGGCTGCCAATGCTTTGCTGGCACGCGCACAGTGAAATGCGTTTCCAAGGACCTTCGCTCCATACCACAAGATATTCCAGGATACACAAGGAATGTGATCATCACAGGACACAATATATTCAGAATTGGATCAGAGACATTTCAAGAACTGAAAAATGTCACCACCATCATTTTGAGCAACAATAGAATCACAGAGGTTGCGTCCCACAGCTTCTCTACCCTTTCCTACCTGCGCTCCCTGGACATGAGCTGCAACCATCTGACTCTCATCCACCCTGAAGCCCTCAACATCCCAGGGAGTCCTCTAAAGGAGCTCAACCTTAGCCGCTCCCTCTATAACTACACCTCACTGACAGATCTCACCATCGCACTGCGCTGGGGAGGCCTAGGAGGGTTGCTCAGCCTAGACCTCTCCGGGAACCGCCTGGTCTTCCTACCCCCAGGGATGTTCTCCCACCTCCCTAGCCTGCAGCACCTCTTCCTTGGTAACAACTCCCTAGCATCGGTCTACAACGGCACCTTCTTTGGCCTGCGCCGCCTGGAGCTGCTTGACTTGACCCGCAACTCTTTCAGGGCGTTCCAAGGTGATGCTCTAGGGGAGCTGGAAAGGCTGGGGCAAGCCCCCCGCATCCTGCTGAGCCACAACCCCTATGTCTGCACATGTGAGATCCAAGACTTTGCTGTGTGGCTTAAGAATTCCCAGGCTCAGGTGGGGGATGCAGAAGCCCTGACCTGCGCCTCACCCTGGGAGTTTCAGGACAGGCCCCTGCGGGCGCTCGGGGTCCAAGTTATCGGATGCCATGCTACTTCACCACCTCTGGTCGGAATCAGAGACGAGGTGGGCGACCTCTCCCTGCAGACCTCCTACGTCCTCTTGGGTCTGGTGCTGGGCTTTGTGGGCATGGTCTTCCTCTTTGTGCTCTACCTCAACCGGCAAGGTATTAAAAAGTGGGTGGTGGAGACGCGAGATGCCTGCCATGAAGTGTTGGAGGGGTATCACCACCGCTATGAGATCGACACTGACCCACGCCGGGAATACCTCTCAAAAGACGTCAGAGTCGAAGAGAAGCCACCGACAAACGGTAGTTTTGGACAGGCTCACTCAGATAACCGCTTATCACAGCTACCCACTGACACCTGTTTAGTTCAGATCCCCTCAGACACACAGGTCAAGCCAGGCTCCATCTCGGTGGATTTGTGATTCCTCATTCCCTGGAATGGAACTGGACTGGAGTGGACTTGCATTCAggtttgggtaggttactttctaaatgtaatctgtaaccgttactagttacctgtccaaaattgtaatcagtaacgtaacttttggattacccaaactcagtaatgtaaatCGGTTTACTTTCCCCTTATTAGAAGTAGATAAAATgatccatacacacacatttggtgtgtcatcatagtggtctctgacttgtggtcagacttgctCTGGTGGAACTCATTTAAACCTGTTCTTTTATCAATGCTGAATTAAATGTAATTGAGAAAACAGCAGACATCCTTTATGAATTtgaaagtaatcatctagtttttcaaaagcaTCTGTAATCTGATATTTTGGGCTGGTAACATAACtgattaaaagtacatttttttcttttgtaatcagattacatataATCAGTTTCTGCCCAACCATGCACACATGTGTGAGGGATTTACCTGTATCATACATTTCTGTACAATATGTTGAATATAATTACATAACTTATGTAAGCATAAAAATGTATAACAGTTCTACAGTTTATCCTTACATAAGTGATGTAATTACACTATTTAATGGAGAGACTATTTTAAGTGTGAACAGCCGGGCTCGTTGTACCTGCATAGCCTTGATGCCTCTCTTGCTGTGGCCACATTTTTACTAACTTGCATAGATTTAACCAAGTTGCTATCCGTCTTTGGTGTtgtatgtattattatattatacttTGTGGGTCTTATTGACATATCTAGATGGAACCAAAGCAACATAGCCTATCTGAAGGGTCTTGACTGCAAAACTAACCTTGAACGTCTACTCTTTTTGGAAGATTGAATGATTCTACACTGCACTAAGTCATATCTTCGTCCTTAACTGACTTTGTAACCAGACGTAACAGGGCAAGACAGAAACAATGGGCACATATTTACAGAGTGCAGAAGTGATGTGGTATTGAAGTGATGAAGCAGGATCTAGTGTGGTGTATAAACTCACGTGCATAACTTACCAGTGTTATGTAAAGATAATTGAAATGAAACAATTGTAAAACCCCTTTGTGGTGctgaataaaaacatgttttcaagaTGTTATCCAAA

Function

NR:

description
trophoblast glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562317.2 True 2649 mRNA 0.45 2 39527602 39530858

Neighbor

gene id symbol gene type direction distance location
LOC110489572 LOC106605173 coding upstream 2671 39521563 ~ 39524931 (+)
LOC110489537 LOC106605082 coding upstream 6980 39500145 ~ 39520622 (+)
ubxn11 ubxn11 coding upstream 42208 39469654 ~ 39485394 (+)
LOC110489505 csn7a coding upstream 87176 39430606 ~ 39440426 (+)
LOC110489499 LOC106605088 coding upstream 107601 39413456 ~ 39420001 (+)
LOC110489590 LOC106605080 coding downstream 9848 39540706 ~ 39547363 (+)
znf407 LOC106605077 coding downstream 38627 39569485 ~ 39766378 (+)
LOC110489609 LOC106605074 coding downstream 291022 39821880 ~ 39862520 (+)
LOC110489640 LOC106583530 coding downstream 585100 40115958 ~ 40292372 (+)
galr1a LOC106605071 coding downstream 778320 40309178 ~ 40319263 (+)
G140834 NA non-coding upstream 25292 39502087 ~ 39502310 (+)
G140809 NA non-coding upstream 89018 39437955 ~ 39438584 (+)
G140794 NA non-coding upstream 97293 39430099 ~ 39430309 (+)
G140793 NA non-coding upstream 104922 39422358 ~ 39422680 (+)
LOC110501538 LOC100301666 non-coding upstream 114861 39403821 ~ 39412741 (+)
G141146 NA non-coding downstream 30021 39560879 ~ 39561194 (+)
G141148 NA non-coding downstream 31577 39562435 ~ 39562737 (+)
G141226 NA non-coding downstream 165503 39696361 ~ 39699522 (+)
G141245 NA non-coding downstream 194305 39725163 ~ 39725428 (+)
G141248 NA non-coding downstream 197902 39728760 ~ 39728997 (+)
G139179 NA other upstream 1475858 38051359 ~ 38051744 (+)
G139101 NA other upstream 1583590 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1586888 37919735 ~ 37940714 (+)
G139004 NA other upstream 1703592 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 3125631 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2008437 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2437516 41968374 ~ 41969317 (+)
G144661 NA other downstream 2979472 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4200014 43730872 ~ 43731218 (+)
G146091 NA other downstream 4237849 43768707 ~ 43769162 (+)

Expression


Co-expression Network