nr0b2a (LOC106605079)


Basic Information

Item Value
gene id nr0b2a
gene name LOC106605079
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39553803 ~ 39555433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562336.2
CAGTCTCACAGATTAGGCTCACCCCGCCCAAAATGGATATGCTCTATCCATTGGTTTTCAATAAGAATACCTTATCTGCTCTTTAGGGGACGCCGTCAGTCGAGTTGTCTGCTCTTTAGGGGCTCTTTGTTTTTTCGCCGAGGGAGTATTGACAGGTCAAGGTGCACAAGTTTAGCTCAGTGGGTTGGCCTTATAAGTAGAAGCATGGTGTAAGGCATCCGCACAACCACACACCACCTCAACAAGAGCCTGTCTTGGTAGGACAAGAGCATTTGAatgtatttcagcttttcattttgttttTGAGAGTTTGTTCTGTATCTCATCAAAATGGATAACGTATGTCAATGTACAGATTACAATGTTAGGCAGTCAAATGCTATCCTTTACAACATCCTCAATCAAGAAAATGTCAAGTCAAGCCACAACAACCTGAACTACAACTTGATACCTCATAGATGCAACTGCGAGATACGACGGACAGTGTGCTTGGAAAGTCCAGCAGACATTTGCCAAGAGGCATCGGGAGTGCTGGTGAAAACAATTCACTTTATGAAGAACTTACCTGCTTTCAACCAACTCCCACCAAACGATCAACTATCGCTCCTCCAAAGTTGCTGGGCGCCACTCTTTATTTTGGGTCTGGCCCAGGAAGGCATGAACTTTGACATCGTCGACACCCCTGCCGATAGCATGCTGAAAAGAATCCTCTTGAATTCTCAAGAGAGCTCAGAGACGGAAAGAGAGCAGCCCACATTGGCTGGTGTGAACAAACTCAAGGCATGCCTCAAAAAGTTCTGGAGTCTGGATTTAAGTCCAAAGGAGTACGCATACCTCAAGGGCACCATGATATTTAACCCAGATGTGAAAGACCTAAAGGCAGCTCTATTCGTGGAGGGCTTACAGCAGGAGGCTCAGCATGCTCTGAGGGAGGTGGTCCAACCGCTCCACCCCGCGGACCGAAGCCGCTTCGCTCGTATCCTGCTCGCGGCCTCCATGCTCAAAACCATCACACCCAACCTCATCACCGAGCTCTTCTTCCGTCCTGTCATTGGCCAAGCAAATCTACTGGACTTCCTGGTCGATATGCTCTTCAGCAGGTAGCTACTGTAAGGCTGATATACAGAGACCTGATATAATTTCCCGCTGGGACAATAAAGTTGAAGCTTAAGCTTGAGGGGTTTGGGCTCCCACTGTGAGGGATATTGAGCCCCCGGGACTGAGTTGGAGGTGTCTGGTCATGTGGTGAAGAGATTGACAAATAAGAGCTCGTTATAAGGGGaaacaaaataaatgtgtatTCTTTATTCCCAGTAATAAA

Function

NR:

description
nuclear receptor subfamily 0 group B member 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function

KEGG:

id description
K08563 NR0B2, SHP; nuclear receptor subfamily 0 group B member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562336.2 True 1321 mRNA 0.47 2 39553803 39555433

Neighbor

gene id symbol gene type direction distance location
LOC118940039 NA coding downstream 52315 39499737 ~ 39501488 (-)
LOC110501545 NA coding downstream 56242 39487555 ~ 39497561 (-)
si:ch211-154o6.3 LOC106605084 coding downstream 88197 39449495 ~ 39465606 (-)
LOC110489516 LOC106605085 coding downstream 104469 39442306 ~ 39449334 (-)
LOC100301666 LOC100301666 coding downstream 141233 39410248 ~ 39412570 (-)
LOC110489623 zadh2 coding upstream 258690 39814123 ~ 39821845 (-)
LOC110489634 LOC106605073 coding upstream 448337 40003770 ~ 40078999 (-)
LOC110489653 LOC106605072 coding upstream 669640 40224622 ~ 40298333 (-)
LOC110489712 LOC106605066 coding upstream 1298782 40854215 ~ 40861194 (-)
LOC110489774 LOC106583729 coding upstream 1312456 40867889 ~ 40907134 (-)
G141108 NA non-coding downstream 3254 39516522 ~ 39550549 (-)
G141091 NA non-coding downstream 83043 39470402 ~ 39470760 (-)
G141090 NA non-coding downstream 83927 39469660 ~ 39469876 (-)
G141082 NA non-coding downstream 126024 39427547 ~ 39427779 (-)
G141081 NA non-coding downstream 127369 39422834 ~ 39426434 (-)
G141138 NA non-coding upstream 525 39555958 ~ 39556282 (-)
G141147 NA non-coding upstream 5491 39560924 ~ 39561351 (-)
G141338 NA non-coding upstream 163564 39718997 ~ 39719255 (-)
G141352 NA non-coding upstream 186955 39742388 ~ 39742618 (-)
G141358 NA non-coding upstream 205605 39761038 ~ 39761262 (-)
G140879 NA other downstream 489385 39063862 ~ 39064418 (-)
G140479 NA other downstream 725608 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 1505137 38046700 ~ 38048666 (-)
G139231 NA other downstream 1800845 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 2090045 37442359 ~ 37463839 (-)
G141363 LOC106605077 other upstream 208500 39763933 ~ 39765473 (-)
G142918 NA other upstream 1307781 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 2159113 41714269 ~ 41730507 (-)
G145010 NA other upstream 3151385 42706818 ~ 42707279 (-)

Expression


Co-expression Network