Item | Value |
---|---|
gene id | znf407 |
gene name | LOC106605077 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048566.1 |
NCBI id | CM023220.2 |
chromosome length | 103806877 |
location | 39569485 ~ 39766378 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: zinc finger protein 407-like isoform X2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036948220.1 | False | 7063 | mRNA | 0.52 | 9 | 39569485 | 39766378 |
XM_036948222.1 | False | 7023 | mRNA | 0.52 | 9 | 39569521 | 39766378 |
XM_036948223.1 | False | 7083 | mRNA | 0.52 | 9 | 39571339 | 39766378 |
TU162245 | False | 499 | lncRNA | 0.37 | 1 | 39764815 | 39765313 |
TU162246 | True | 418 | lncRNA | 0.45 | 1 | 39765951 | 39766368 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110489590 | LOC106605080 | coding | upstream | 22122 | 39540706 ~ 39547363 (+) |
LOC110489581 | LOC106605172 | coding | upstream | 38627 | 39527602 ~ 39530858 (+) |
LOC110489572 | LOC106605173 | coding | upstream | 44554 | 39521563 ~ 39524931 (+) |
LOC110489537 | LOC106605082 | coding | upstream | 48863 | 39500145 ~ 39520622 (+) |
ubxn11 | ubxn11 | coding | upstream | 84091 | 39469654 ~ 39485394 (+) |
LOC110489609 | LOC106605074 | coding | downstream | 55502 | 39821880 ~ 39862520 (+) |
LOC110489640 | LOC106583530 | coding | downstream | 349580 | 40115958 ~ 40292372 (+) |
galr1a | LOC106605071 | coding | downstream | 542800 | 40309178 ~ 40319263 (+) |
LOC110489685 | LOC106605069 | coding | downstream | 869721 | 40636099 ~ 40653382 (+) |
LOC110489695 | LOC106605067 | coding | downstream | 1014648 | 40781026 ~ 40847759 (+) |
G141148 | NA | non-coding | upstream | 6748 | 39562435 ~ 39562737 (+) |
G141146 | NA | non-coding | upstream | 8291 | 39560879 ~ 39561194 (+) |
G140804 | NA | non-coding | upstream | 18712 | 39516493 ~ 39550773 (+) |
G140834 | NA | non-coding | upstream | 67175 | 39502087 ~ 39502310 (+) |
G140809 | NA | non-coding | upstream | 130901 | 39437955 ~ 39438584 (+) |
G141367 | NA | non-coding | downstream | 2743 | 39769121 ~ 39769405 (+) |
G141370 | NA | non-coding | downstream | 4801 | 39771179 ~ 39771552 (+) |
G141372 | NA | non-coding | downstream | 5936 | 39772314 ~ 39772515 (+) |
G141377 | NA | non-coding | downstream | 9116 | 39775494 ~ 39775716 (+) |
G141378 | NA | non-coding | downstream | 9932 | 39776310 ~ 39776512 (+) |
G139179 | NA | other | upstream | 1517741 | 38051359 ~ 38051744 (+) |
G139101 | NA | other | upstream | 1625473 | 37943742 ~ 37944012 (+) |
G139089 | LOC106605123 | other | upstream | 1628771 | 37919735 ~ 37940714 (+) |
G139004 | NA | other | upstream | 1745475 | 37777061 ~ 37824010 (+) |
LOC110488849 | LOC106605147 | other | upstream | 3167514 | 36354883 ~ 36405310 (+) |
LOC110489834 | eny2 | other | downstream | 1772917 | 41539240 ~ 41541654 (+) |
G143938 | LOC106605049 | other | downstream | 2201996 | 41968374 ~ 41969317 (+) |
G144661 | NA | other | downstream | 2743952 | 42510330 ~ 42566030 (+) |
G146054 | LOC100136012 | other | downstream | 3964494 | 43730872 ~ 43731218 (+) |
G146091 | NA | other | downstream | 4002329 | 43768707 ~ 43769162 (+) |
G141270 | NA | non-coding | upstream | 3553 | 39761038 ~ 39761262 (+) |
G141267 | NA | non-coding | upstream | 6926 | 39757573 ~ 39757889 (+) |
G141262 | NA | non-coding | upstream | 21223 | 39743308 ~ 39743592 (+) |
G141261 | NA | non-coding | upstream | 21708 | 39742888 ~ 39743107 (+) |
G141260 | NA | non-coding | upstream | 22112 | 39742422 ~ 39742703 (+) |