LOC110489609 (LOC106605074)


Basic Information

Item Value
gene id LOC110489609
gene name LOC106605074
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39821880 ~ 39862520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562345.2
GCGCGAGGGGAGGAGTAAAAATGAAGCAGGAAAAGCCACTCGATGCGTCTGTCTATCAGTTGAGACTGTCTGAAACGCTTCTCGATTCCCTGCGTTTTCATTTTTTTCCTCGGAGGAGCAGACGAGACCTCGGTTCACTCCCTGGAGTTTACAGAAGAAAAATTCTCTCCGCGAGGGTGGATGCCTGCACCTTGTTTGTTTCTCTTTAGTCGCAGGCTCCTCACCACTTCAACCACCTGCACATTCCTTGATCGGCGGCTGATAATAATTATTTTCCACGACTAGAAATATCTGAGCTTGAAGCGCAGCCTTCCACGGAAATACATTTCAAAGGTGTTCGCTCACACTGGACTTATTTGTTTACCATCAGAGTTTATTTATTTTGGAGTGAAGGCGGTACAAAGTAGCCCCAACACCGCCATATAGCCCCCTATGGCAGCAGGGGAGTGACTGAAACTTGGCTTCGATGTCTGCCTCTTTTTCTGACACACAGTGATGAGGAAAGATGTTATTTGATAGACATGTTCTCAGCTGGCGAAATTCGTGCATCGTTTTGATATCACAGAACCCCTTTTTTTTCGTTTGTCCTTTATCTTCAGTCATTTGTTTCTATTCGTAGGCCTAAAGGACATATTTAGTTATATTGTGGCCGTTTCAGGTTGTCTGGCATAAGCCCACAATTACAAAAGAAACAAACCATTCTAATAGAAAAAACTGTTGACAGTTATTtcccgaaaaaaaaaaaaaggttcggGATGGTTTTTCTCCACTGACAGACTAATTGTTTTGATTCCTGCATGAAAAGTACCGTGGAACGTGACGGTCACTATGCCGAGGAGAAAGCAGCAAGAGCCCAGGCGATCAGCAGCTTACTCACCAGAGGACGAGTTTAAGGCTGGAGCAGTCGATGAGGAACACCTGCAGGATGACGGGCTGTCACTGAACGGGGAGGACACTGCGTACCTTTGCAAcgaggaagaggatggaggaCAGCCGCCCAGCTACCGGGCCTCTCCACTCAGTAATGGCACCAACCCAGACGCTGGCTACGGCTCCCCGCTCAGCGATGCCAGTGACCGGCTCACAGActacaagagcacctcctccagggaTGGCCATGAGAGGGAGGAAGCCCCCCTCCCTTCTGGACTGAACAATGGCCTCTCACTGAGGGACAGCCTGGCTCAGATGAAAGCTGTCTATGCAAACCTGATCTCAGATGCCTCCTGGTCCAGCATTGCCATGGACATCATGAAAGCCACGCCTGCTACTGCTGGCGCCATCCCCATCCCCACCGCCACCAgccccaccactaccaccacacacaacaacaaccacagtgaGAACAGCAATGCTAGCAGCCACCACCACAATGGGAGAAGAAGTACGGCCACCGCCAACCACCAAACAAGCAGTGGCAGTGGCAGCTCTAACGGCACCGTGGCTACCTCCATCAGTAGCAACAGTGGCACCAGCAGTGGCGGTGGCAGTGCTAGTAACGGTGGGGCTGTGGCCTATGACTGGCACCAGGCAGCCTTGGCTAAGACCTTCCAGCATACCCCTTACCAACTGCTGCCTGAGCCCAGCCTGTTCAGCACGGTACAGCTCTACCGCCAGAACAACAAGCTCTACGGCTCAGTCTTCACCGGCGCCAGCAAGTTCCGCTGCAAAGACTGCAGCGGCGCCTACGACACGCTGGTGGGGCTCACGGTCCACATGAACGAGTCGGGCCACTACCGTGACGACAACAAGGACAAGGAGGAAGAGCGGGGCAAGCGCTGGTCCAAGCCCCGCAAGCGCTCCCTGATGGAGATGGAGGGCAAAGAGGACGCTCAGAAGGTGCTCAAGTGCATGTACTGCGGCCACTCCTTTGAGTCTCTGCAGGACCTGAGCGTCCACATGATCAAGACCAAGCATTACCAGAAAGTGCCCCTCAAAGAACCAGTGCCTGCCCTGGTCACTAAACCGATGCCCTCTGCCAAAAAAAGAGCCCTCCAGGACGCCCTAGTATCCCCATGCTCCCCAGACTCTGTCCATGGTAGCGGTGGCCACATGCCCCAAGGGGACGTTGGGAAAGACCCCAAGTCCACGACAAACCCCTATGTCACACCCAACAACCGCTACGGCTATCAGAACGGTGCCAGCTACACTTGGCAGTTTGAGGCTCGCAAGGCCCAGATCCTGAAGTGTATGGAGTGCGGGAGCTCCCACGATACACTGCAGCAGCTGACTGCCCACATGATGGTCACAGGCCACTTCCTCAAGGTCACCAACTCCGCCTCAAAAAAGGGCAAGCAGCTAGTGTTTGACTCAGTGGTGGAGGAGAAGATCCAATCCATCCCTctgccacccaccaccaccaggcttcCCGTCCCCAGCGTCAAATCTCAGCCTGTCTCCCCTGCACTCTCCTGCGGCTCTGACGAAAAGAGAGAACCGGAAGACGAGAGGATGGAGGCAAGTGAACCCAGGGAGAAAAAGatcaaagaggagaaggaagagccAGGTGAGAAGACTGAGGTGAACGCTGGGTCGTATAAATATCTGACAGAGGAGGACCTGGAGGAGGCTCCTAAAGGAGGTTTGGACATCCTCAAGTCCCTGGAGAACACTGTGTCCAGTGCCATCAGCAAGGCCCAGACGGGCACGCCCCAGTGGGGTGGTGGCTACCCCAGCATCCACGCTGCTTACCAGCTCCAGGGCCACATGAAACATGCAGCACTGCACTCCTCGGTCCAGAGTGTGCAGATCCAGCCGGTGTTCAACAGCGGGCTCCGCGGCCTGGTGAACCAGGACTCAGGCTCAGTGAGCCACTCCCCCAGGAGCCCTGCATCTCCGCCCTCTCTCAGGAGCAATGTTACTGCCATGGAAGAGCTGGTGGAGAAGGTCACAAGGaaagctgttgctgctgctgtgaagaaagagaaagaggagaagatggtCAGCTTGGACCGCCACAGGCATTCATCCTCCATCAAGTCGCCGTCTCCTGTACTGAAAGAGCAGAGGGACCACCAATCAGGGCCCAATGACCTCACTGTCGGGAAGCCCCTCGTGAGGAACAGCAGCCCTGGAAATTTAGAGTCGGAGCTGGTCTGCAAAAAGGAGCCCAAAGAGAGCCTGGTAGACAACCACCACAGCCATTCAAAGAACGGCCCAGAGACTCGCCAGTCACCCATCACCAACGGCACCAACAGCTTGGGCATCATCACCGATCACTCACCAGAGAGGCCTTTCATCAACCCCCTCAGCGCACTTCAGTCAATCATGAACAACCACCTGGGCAAGGCATCCAAGCCCGTCAGCCCCGCGGGCGACCCGCTGGCCATGCTCTACAAGATCAGCAACAGCGTGATGGAGAAACCGGCCTTCAACCAGACTCAAGCCAAGCAAGCCGAGCCCATCAACCGCTACTATCAGTACGAGAACAACGACCAGCCTATGGACCTGAGGAAGTCCaaaaacagcaacagcaacaacagcaacagcaacagcagcactggcatcaacagtaacagcagcataaATGGTAACAAACCCATAATGTCaagcctgtctctgtctgacatTTCTTCTCCTCTGAGAGAGAATGCTTTGATGGACATCTCAGACATGGTGAAGAACCTTACAGGCAGGCTGACACCCAAGTCCTCCGCCCCGTCATCCATCTCCGAGAAGTCGGACGCAGACGGCAGTGCGTTCGAGGATGCTCTGGAGGACCTCTCCCCGGTCCAGAAGAGGAAAGGGCGGCAGTCCAACTGGAACCCCCAgcacctcctcatcctccaggCTCAGTTCTGCTCTAGCCTGCGGGAGACCCCGGAGGGCCGCTACGCCATGACGGACCTCGGCCCCCAAGAGCGGGTTCACATCTGCAAGTTCACAGGCCTCTCCATGACCACCATCTCTCACTGGCTGGCCAACGTCAAGTACCAGCTCCGGCGGACTGGCGGGACCAAGTTCCTGAAGAACATGGACTCCTGCCAGCCTGTGTTCCTCTGCGGTGACTGTGCCTCGCAGTTCAGGACTGCGTCCGCCTACATCGGCCACCTGGAGTCTCACCTGGGCTTCAGCTTGAAGGACCTGTCCAAGCTGTCCAATGAGCACCTACGGGAGCAGCAGGCTGCCTCCAAGGTGATCACAGACAAAATTACTTTTGGCAGCACCCTGGCATCCCTGACCTCACCAGACGACGACACTGGCTCAGTTTACCAGTGCAGGCTTTGCAATCGGACATTCGTCAGCAAGCACGCAGTCAAACTGCACCTCAGCAAGACCCATGGCAAGTCACCAGAAGATCACCTGGTGTTCGTCACTGCTCTTGAGAAACTGGAGAAGTAGTAGAGAGGTCTGGagctgagggaagagacagataaacagacagaAAGACGGCTGTGTAACTGACCAGAATTTCATTGCACTAAGATAACATTGTTCACAGTTACTGCACTGGGCCGAACTGAGCCGCCAGAAATCAGTCTTATTTTATGTTGTGATACTGCCTGACTGGACcatgttttatttgattttcTTTTGCCAAGCTTTTTTTAACACTTATTTTGTAATGTATTTATATGCTATTTGTCTGATCTGTGCATGTATTTTAGTGAACCAAGGTTAAatacaagtttttttttaaaatcttttcATGACAAAAAAAAACTACTACTGTTTCAATGGTGACTAAAGTGGCGACCAGAAAATGAATTAGGGGGAAAAGAAAACTGTACAATACTTGATATGAAGAAGTTGAAAATTCATTGTTCACACCAAAAGAATGGACGAACCCCTTGAAAGACTGACGTAGCACCTTATAGacgttttaacattttatttgtaaagAGAACATGTTTTAAGATATTCTGCATTTTGTCCAAAATCTGTTTTAATTTGAAAGATAAATTATTTTCTTCTCTCGGTTCTTGTCACACTGCAACATCTTTGCTAAAGAATGGCCTGCTCAGAAATCTGTCAGTGTATGACAAAACGAAACAGATAATGTAAACATTCAGAGTAATTGAAATGCTGCTTCTGGTTACATATCAGTCAGTGAAAATGAATGGCCGTACAGTATGCAAGTTTgctcaaactttttttttttttatgtgaagTATCACTTATAGTAATTTTCCAATTGTATGGTTTGTTACAAGCTcctttaaaaaattaaaaaattggcGCTTTGAATTCAAGCATTTTAAAAGAACAGTCCTTTACATGTAAATGACTCACAGTGAAATGTCATACTCCATAAGACATATCTTGCCATTTGCAATAGCTCAACATTCTTTGTACTTAAAAGGTGTGTGCATTCTTTAACTTTTATATCGTCattttatataaaataaaataaaaaaaatacaaaaaatgtgtatatagatatatactgtagattcacaaaaatgtcattttttaagAAATAAGAATATAGCTTCTTTGGCTTGGTTTACAGAAATGATTTGAATTATACTTGCATCCAATTTGATGCATGATATGGTGTGAAAAAGAATTAAGCGATGCACAATGACTATACATTTCAATGTTTTATCGAtgatattgtaaaaaaaaaaaagaattattTCTAGCACCGATTAGTTTGTtttcatttagtttttttttctcaattgtAAAATAAATCTCAACGCAGTTCTTGTTAACAGTCA

Function

NR:

description
teashirt homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562345.2 True 5663 mRNA 0.49 3 39821880 39862520

Neighbor

gene id symbol gene type direction distance location
znf407 LOC106605077 coding upstream 55502 39569485 ~ 39766378 (+)
LOC110489590 LOC106605080 coding upstream 274517 39540706 ~ 39547363 (+)
LOC110489581 LOC106605172 coding upstream 291022 39527602 ~ 39530858 (+)
LOC110489572 LOC106605173 coding upstream 296949 39521563 ~ 39524931 (+)
LOC110489537 LOC106605082 coding upstream 301258 39500145 ~ 39520622 (+)
LOC110489640 LOC106583530 coding downstream 253438 40115958 ~ 40292372 (+)
galr1a LOC106605071 coding downstream 446658 40309178 ~ 40319263 (+)
LOC110489685 LOC106605069 coding downstream 773579 40636099 ~ 40653382 (+)
LOC110489695 LOC106605067 coding downstream 918506 40781026 ~ 40847759 (+)
LOC110489783 LOC106605064 coding downstream 1018654 40881174 ~ 40885140 (+)
G141413 NA non-coding upstream 8316 39813353 ~ 39813564 (+)
G141412 NA non-coding upstream 9453 39812120 ~ 39812427 (+)
G141378 NA non-coding upstream 45368 39776310 ~ 39776512 (+)
G141377 NA non-coding upstream 46164 39775494 ~ 39775716 (+)
G141372 NA non-coding upstream 49365 39772314 ~ 39772515 (+)
G141486 NA non-coding downstream 79629 39942149 ~ 39942372 (+)
G141503 NA non-coding downstream 105548 39968068 ~ 39968370 (+)
G141507 NA non-coding downstream 114119 39976639 ~ 39984542 (+)
G141522 NA non-coding downstream 141710 40004230 ~ 40007277 (+)
G139179 NA other upstream 1770136 38051359 ~ 38051744 (+)
G139101 NA other upstream 1877868 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1881166 37919735 ~ 37940714 (+)
G139004 NA other upstream 1997870 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 3419909 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 1676775 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2105854 41968374 ~ 41969317 (+)
G144661 NA other downstream 2647810 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 3868352 43730872 ~ 43731218 (+)
G146091 NA other downstream 3906187 43768707 ~ 43769162 (+)

Expression


Co-expression Network