LOC110489634 (LOC106605073)


Basic Information

Item Value
gene id LOC110489634
gene name LOC106605073
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40003770 ~ 40078999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948238.1
CTTTGCTTATCGTCATTGCTCGAGAGGAATCAAGCTCTTAGTGCATTGAATGCTTGGAGACCGATGACTATCCCTATGTCACAGTGGTTTCGACTCACTCAATCATATGCACTTCAACATACAGCGCATGCTGCTTTCGCCTTTGCTTTCGCCTATTCTTTGGGAGTGCTTGCAGGATATGTTTCGATCACACACTTGCACACAGggTGAGGACCTGCACAGGCTGTACAGAGAGCTCACAGAGAGTGATGCAACCTGGGAGCTGCTGATGTGATGAAAAATAAAGCCAAAGAAAAGCCAGCCAGTGAACTGAACAGGAGTGGGGACATGGTGTAACAGTGTCTGACTATACACAGCCACAGATAGAGCTCAATGTGTTGCCATATACCATGGCGGATTCTGTCTGACACAGTGTAAGGCACACGGAGATGTGCGATTCCAGATAGCGCTGTGTAAGCCATTTCACAAAGGGCCCAATAGCAGGTGCAGAGACATCGACAGTGTTGGATTCACTGACTGTCACTGCATGGATGAAGACCGATAGATGGCATTGGATTCACTAAGCAAAGAGTGTCAGATGAACACGGCCTAAATAGCACTGGATGCACCCATACAGTTGGCAGTGGATGATCACGGACAGATAGCATTGGGATCGGCTGATACAGACGCAGAACGCTAGAGCTAGATGAGCTACTGCAGATAGCAGTGTAGATCCACTGTTAGCGAGCTAGCGCAGGTAGGGAGTTGGAGTGGGAGGCATAGCACCATGAACCCcagagagagcggaggaggagtggaggacatgGAGACCCAGGCGGGAGGTTTGGCGTTGGGGGAAGAGGGTGGCAAGGCCAGCCatagaggagatggagaagagggggaagaagacAAGGCCTCAGCCTACGACTGCAACGTGTGTGGCCGCAGCTTCCCCTTCCAGAGCTCTCTGTCGCAGCACATGCGGCGCCACACAGGCGCACGCCCCTACAAGTGTCCCTACTGTGACCACCGTGCCTCCCAGAAGGGCAACCTCAAGGTCCACATCCGCAGCCACAAACTGCGCACACTCACTAGCCACCACcccgaggaggaggaggggccagaggaggaagaggaggggtcaGGTGAAGTGGGTGTGTCCGAGGGCCTGGACGGTGGAACCAGTCCGACGAAGAGCAGCTCGGCCTGTAACAGGGTCGTCAACGGCGACGCTAACACAGAAGAGGGCATAGGGAAGACGGCGGTGAGGAGTGTCAAAAGGGAGAAGTCGAGCTCTGAGCAGCGGCCATATTGCTGCCGTCTGTGCGGGTACCAGACCCAGCGCGAGGACCAACTCCTCAGTCACATCGAGAAGGTCCACATCACAGCCGACATGGAGGACGAGACTAACCCAGTGAGTCAGGAGGCAGTGGCAACGGAGGGAGAAGCAGGGACTCAGGTCACTGATGGGGCCTTCCCCTGTGAGACGTGTGGCCAGGTGTTCACACAGGCCTGGTTTCTTAAGTCCCACATGAAGAAACACGCAGGCCTCCTTGAGCACTGTTGTCGGGTGTGTGGCCGTCGCTTCAGGGAAGCCTGGTTCCTCAAGAGCCACATGAAGACCCACAATGGCTCCAAGGCCTCCGGCCGGGGGAAACCCAAGGCAGACTCCCAAGAGGCCGCGGCCACCATCAACGACGTGGCCCAAGACCCAGAGACCAATGTGACCTCCACAAGCCTTTACCAGGTTTGCTCCAAGTGTGGCAACCTGTTCCATGACCGAGAGAGCCTGAGGGCCCACGAGAAGGTCCACAACCAGGCTAAGCAGCCGACACAGGGCCAGAGACCTAGTGACGACGGGGACTCTCCCAGTGCCAAAAGGCGCCTCTTGGACTACCTCAGCCTCCGCCCAGCTGACGAAGTAAAGCCCCAGGAAGAGAAGAGGCGCTTGGGCCAGAGAATCCCCGAGCTGGACCCAGTTTGTAGCTACCAGGCCTGGCAGCTGGCTACTCGGGGCAGGGTTCTGGAGCCTGTGGAGTCATACAGTATAAAGGCTACGGTAGGTGGGGAAGGGGACGAGGCCCTGGCTGGAGGGACCGTGGTGTACGAGAAGGAGAGCAGCCGCTACATCCTGGAGGGCCAGCAGAGGGAGAGACGCTCAGGGAGACGCAGCAGCGCCAGTGGGGGAGGGGGTAGTAGCCACCACACCTCCCCGGGGGAGCGCACCCCCGAGAGTCTGAGCGACTCGGAGTACCGTCCCTCCTCCCGCCAGGGCCGACGTCCCTCGTCCTTCCAGCAGAGCCAGTCCAAGTCCACCGAGTGCTTTGAGTGCGGAAAGGTGTTCCGCAGCCGCCACCAGATGATTGTGCACCAGCGGGTCCACCAGAGGCGAGACGGGGGCAGGGGTTCCGGGTCCGGAGGGGACAACAGGGCAGGGCAAGGAGTGGACCGCTGGGGATCCACCAGTGACCCTGAATCAGGCTCCCCCAGCAGGCCCAGCACCCCAGGGTACGGGAACTCACCACCAGCCTCCACCCTGGGAGAGGACGCCCCTGAGATGAGCACCGCCAATGCAGTCCAACTGGCAGATGAGAAGTCTTATGTCTGCAGCCTGTGTGACTTTGTCAGCACAGAGTCCTCTGCCTTCCTGTCCCATCTACGTCTCCAGCACACCAGTGACGGCCGCCCCATTCCAATTCCCAACCCCAGCTCCAGCTCTGAGAGAGGCACCCCCAGTAGCTTCCCCAAGCTGAAGAGGGCCCTCCTCGATGGGCTTGCTCAATCCTCTGCCCCCCACCCTTACCTCTCTGCCCGGCCGTCAAGAGACAAATGCACCGCCGAGGGCAGTTCACCCACTGACCCTCACCATGTTGCTCCTCTGGACCTGTGTGTGAGAGCCGAGGGCCACAGGGGCCCGACCTCCTCAGCCCTTCAGCAGAAGGGCCTGCCCAGTCATAAGTGCTCTTACTGCTCCCACTCCACCCACTACCTGGAGGTGCTGTGGATGCACCAGACTGTCGCCCATCGTATCAACAGCAGCGCCCTGGCCCCCAAATGGGCCCTCCTGAAGAATGGCTTCAAAGGCCCCCGGGAGCTTTCATCCTCCAGGAGACGCACGGGCCCTCCTCCTGCTCTGGATGGGAGGGAGTGCCCCCCGTTGCCCCCTGTGGTGCGCACCCCCCGCACACGCCCCCCATCGTTGAATGGGGGCCAGAAGAAAGACGGCAGGGACAGGGCAGCCAGTCAACCCagcacctcttcctcctccacacaAGGATCCTCCTCTTCTGCCTCAGGCTCCCAGAGTGTGCGGCCTTCCAGGGCAGGCAGCAGACAGAGAGGCGAGGCTGTGCCAGATCAGGGCCACCGCTCTCGCTCCAACTCCAGGCCCAGGGTGGAGATCTACCCACGGGGAGGCTCCTCGACCGGCTCCCTGGAGAAGAGCACTGCGGCCGGGGCTCCCCAGCGACCCTCAGCCCCTAGCCCCAGTGTTggaggaaccaccaggctggtgGATAGGTACATGTTGCCTCAGGAAGGCCTTGGATTCATGCTGTCCAGCAAACATGGCCTGGCAGAGTACAGCAGAGCCAGGAGCTCGCCTCAGCCCCAGCCCAAGCCCAGCAGCTCCCAGTCCCACACCCAGTCTCACCCCCAGTCCCAGGTCAGACCCAGGGCAGAGCGCCCAGCCCACAACACCACCACGGCAGGCCAGGGCTACGGAGCCTCCCACTCCCAGACACTAGGGAGCGCCGTCCAGGTATCCTCCGCCTCTTCCTCCTACTCAGCCCAGCATGCGGAGGTGAAACAGGAGGAGGCACGGAGGGTGGAGACACCAGAGCTGCCCATGGACATCTTGAGCTTCCTGAAGAACTGCAACTCCAATGACCTGGCGACACTCTACCACCGCTGGGGCGCCGCCAACCCCCTACTGGACCCCACAGGGATGCTGAGGTCTCTGGTTCGACAAGGGGAATACGGCTGCCAagagtgtgggaagagcttcagtcAGCCCAGTCACCTCCGCACACACATGAGATCCCACACAGTCGTGTTTGATTATAACGGACTCCGAGGTGCTGACGCTCAAACCAACCCCTCGGAAGCTCCCAAACAAGGGAGAGACCGTTCCGGTGCCGCCTCTGCCCGTACCGAGCCTCTCAGAAAGGGAACCTAAAGACCCATGTCCAGAGTGTCCACCACGTGCATTTCGACAACGCCCAGTACCCTGATTACAGACCACCGGGACTGGGCCtcgaacaggaggaggaggaggtaataACAGACCCACCAACGTGACATCCCCAGGGCCTAAGATAGAGATAGAGACTCTATCCATATTCCCAGCCCCTACCCAAAGACAGCAGAGAGACCTGAGAGCTGTGTCAGAGACACCACCTGACAGAGTGAATGAACAGAATGAACTCACCTATTGCCCTTTTAGATGAAATATTACCAGGACTATTTGAAATGTgtttaaaaataagaaataaaaggattTCTTGGAAAGAGAAGAAAAATCGGACACAACCAAATGCTGTTTTGTTTCCTCTGTGGACCCATGGGCAAGGATGGCATGGTGGCATAGTGACGTTCCTATAGCTTTCCATTTTCCTATTTTTCCCTATTTGATTTAGATTGTGATTAAATGGTTTTGTGCATTCCTCAGGACACTGATCCCTTAATAACACACGGCAGAATGGAGCAGCCAAGTTGGTGATGTTTACACTGACTGAACTGAACTCACTTAGCTAACCCTCCGATTGCAGCTAACTTGACAAGCTcaagacggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcttcctcTCGAGCACCACTATGATGAGTCCAGTATGAGTGGCTATAGTGAAGTGACCACTACACGATCTGACTCCGAGGCTGTTTGGTCGGTTattaaagagagagaacaagagagagagagggctaatGACAGTGTGAGAGGAGGTGCCTGCTTTGCTGCTCATTAAAAAGAGTATGTGCTTTTAATGGGGGGTATAAACGAGCGTGCGGTTTTAACAGTCATTCAATTAttgggaggagaagaagaggccgTTTTCTGATCCCTCTGATCCGAGCGTAGTcctcctcccacacccacacCTCCAACCTCAAATTAGACCCACTTACTGAAACCTCTTAGCAGGAATAAAGTGGTCTGACTGTTTGGTTCAAGTTGCCCTTACTCTCTTTTCTACTTGAGTAAGAGTATACTCCTAAAAGCTAGTCCTCACAACAGTAGCTTTTGGGGGGGGAGCGGTTGAGAGGTCAGGCGTCTAGAGCTTTCAGGGAGCATTGTTGGAGACAGTGTTTTGTTTCTGATggctgcggtgtgtgtgtgcggcttgtgtgtgtgctgcttgtgtgtgtgttttgccccTCCTTGATTACCTCTGCGTATTAGACTCCCTTTAGACGCTTTGCATACTACCTCCTTTGCAATAAAAGCTTGTTTTGGTTTTTGTACAGCCAGGTATGAAGTGAGGACCAAAGCCATgcttgtatactgtatataagatatAAGGAGAGGCTTCACTGTAACCATATGTGTGaagtttttctcaaagttgcatTCACCCTCATAAAACGCCTCCTGGATTCATAGCCATGCCTATGACTATTGGATTACCTGTTTGTTAGGGCAGAcaccaaaaaaaacattttttgcaacggaaaacaaaaatGAGCATTTCTGATTGGACAAATCCAGAAGggccctccctgtttcagtccatctTCTTCCATtgggtgcctaatgaacaccacCCAGGTGAGGTGAAGCTCTAATAAGTTAGTAATTCTTGTTTTGGTGCATGGGATGTCAACATGTTCGTTCAGACAAGCAGACTATTGGTCAGACAGTCTTTTTGAGCAAACGTTGTATACACGCAAGGCTACGTGCACTGTACAAGACACTGCAAATGGCAAAGTGTGAGACAAATAGAAGTGAATAATTATCAGCTGTTTAGaattaaaacaacaaaaaaaaattgggggggggaTTCAAAGATATGGAATTATTGTCATGGGATATAATACTGTCTACTTTGAGACCTCGGTAGTAGTTTTTACATGAACACAAGATGAAACCATTTCTGTGTCAGTTACTTTATATGGTTGGTTGAATATGCGTACAACAATGTGCTTGCGTAtacctacacatactgtatgtgtatattaaAGATGGATAGTCAAATACTTGAAACGGATAATATAGCCTATCAAGTAGTGTCCTTAATAATTAGTGCCCTTAAATACTGTTGTACAGAATGACCCTTTAAGATGAACTCCTAAAATACACATTTGTACTCCTAAGTGTGACTTAGCAGATATGAGCAGACCACgcgggagtgagagagtgagtatttgtgcgtgtgtgtatgtaagtgtgtgtgtctgtattataaTCGTACCGAACCCGTTACAGCGTTAGATACCAAATGGCATTTCCGGTGCACTTAGTCTAGGTTACTGCTTTAACCCGTTATAACTGTCTTCTGTCTTGTTCTATTATTATAGATATCCATGATTCATTTAATATCATTTgctatgtgtttttttttttttaggcgtttgttttttttattacacTGCTCAGTTCAGTTTTCGAATGGAAAACGATAGGCGCATAAATATGTTTCATAAAGAGCGtgtttttagtctctctctctttgctaaaaaaaaaagtagaaCTTCTTCAGTAGATAGCCATGGTTACCCTCCCAAAGAACGTGGTGAAAGTCATTATTTCTATTTGGTTGGGGTTTTAACAATGTCtccaagttgtgtgtgtgtgtgtgtgtgcgttggctTTTTATTTGTAATTAACTACATTGTAATTGTTCCGTAGATGACATTATTTGGAATGTATTTGGTTGACATCTGTATTTATTAGTTACAATGATCAGAGCAGAAGCAGACAGGACTCGTTTTATTTGATCCTTTTCAGATGTGTTTTTACACTTTGTTTTCACTGTCCCCGATGAAAGCTCTACCTCGTCTGAGACCTTCTCGGTTCTGTTAAAGTTTTGTACATCGTTGCAGAAAATGTAAAGTCATCATGTCCACATTAAATACACAAATATGGCACCATTCAACCGGTTTCATCAGTCTCCCTTGCTTGCATGTGATAGAATGAGCAGCATCCTGTTGGGATCTGATGGAATACTGTAGGCtcctaggggagagtggggtaagttgtgccatttttttgttgaattttcagGATCACtttgtcaagggaaatatagtattctttctaacaaagatatctacatatatttcaggatgttgtgtatctcTGGAAATAATCTGAATTCATGTTaccattacagttttgaaaatatTGACTTAAGTTAAGGTACCTACACATTTTTAGACTGAATTAAATATTCCCgctacctttttaaaaccatgtctatgTTAATTTCCCAAATTCAATTCAACATCACTTTTTTGTCTTTTAATCATTTAAAGCATATTTTAACGCAGGCTTAACACCTAACAGACActttttttaaaaacactttGAACATCGTTCCAGCGACAATTCCTTGCATTATACCTGGGG

Function

NR:

description
zinc finger protein 516-like

GO: NA

KEGG:

id description
K22411 ZNF516; zinc finger protein 516

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948238.1 True 7615 mRNA 0.51 6 40003770 40078999

Neighbor

gene id symbol gene type direction distance location
LOC110489623 zadh2 coding downstream 181925 39814123 ~ 39821845 (-)
nr0b2a LOC106605079 coding downstream 448337 39553803 ~ 39555433 (-)
LOC118940039 NA coding downstream 502282 39499737 ~ 39501488 (-)
LOC110501545 NA coding downstream 506209 39487555 ~ 39497561 (-)
si:ch211-154o6.3 LOC106605084 coding downstream 538164 39449495 ~ 39465606 (-)
LOC110489653 LOC106605072 coding upstream 146074 40224622 ~ 40298333 (-)
LOC110489712 LOC106605066 coding upstream 775216 40854215 ~ 40861194 (-)
LOC110489774 LOC106583729 coding upstream 788890 40867889 ~ 40907134 (-)
LOC110489723 NA coding upstream 849217 40928216 ~ 41111980 (-)
LOC110489798 LOC106583742 coding upstream 1078009 41157008 ~ 41237519 (-)
G141913 NA non-coding downstream 13016 39990449 ~ 39990754 (-)
G141895 NA non-coding downstream 38510 39964953 ~ 39965260 (-)
G141833 NA non-coding downstream 153939 39849394 ~ 39849831 (-)
G141392 NA non-coding downstream 215040 39788040 ~ 39788730 (-)
G141389 NA non-coding downstream 217391 39785904 ~ 39786379 (-)
G142069 NA non-coding upstream 137067 40216066 ~ 40216322 (-)
G142070 NA non-coding upstream 137405 40216404 ~ 40216619 (-)
G142334 NA non-coding upstream 445047 40524046 ~ 40524255 (-)
G142462 NA non-coding upstream 450708 40529707 ~ 40633685 (-)
G141363 LOC106605077 other downstream 238297 39763933 ~ 39765473 (-)
G140879 NA other downstream 939352 39063862 ~ 39064418 (-)
G140479 NA other downstream 1175575 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 1955104 38046700 ~ 38048666 (-)
G139231 NA other downstream 2250812 37747441 ~ 37752958 (-)
G142918 NA other upstream 784215 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 1635547 41714269 ~ 41730507 (-)
G145010 NA other upstream 2627819 42706818 ~ 42707279 (-)
G145767 NA other upstream 3191718 43270717 ~ 43272516 (-)

Expression


Co-expression Network