galr1a (LOC106605071)


Basic Information

Item Value
gene id galr1a
gene name LOC106605071
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40309178 ~ 40319263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562443.2
GCGACTGAGGACGCATCAGGTGGAGACAACAACTGCATTACGCACCAAGAATATATAGAACAGTACACTCTGGGCAGCTAACTTCAAACATATTGACAAAATGTCTCATAAAAAGTATCTTCACTTACATTGTATCGAAAAACAATGAGGAACATTGCAACGAATTGAGATACAATATTGTGTGATGGCTGCATTCAAGAGACTCAAGAGACTTTGAAACAAATTATACTTTAATTATCTGAATAGGCAAAAACGCCTGCCAGCTAGTGTCAAACGCCCCTGGAAGACATAAGAAGGCATTTGTGCCCCCTTCACTTACATTTGAAAATATTTCAGCACTAGAAAAAGTGATGAACTCGTCAGGTTTGGACAACCTAACCGAATTTGCACCATGGTATGTCAACAGAACGGATGTCGAGGAGGAAAATCCGAAACTTTTGTTCGGGATTGGCATGGACAACTTCATTACGCTTTTGGTTTTCGGACTCATCTTTACACTTGGAGTGTTGGGAAACTCCATGGTTATCACGGTGCTAGCCCATAGAAAACCCGGAAAACCACGGAGCACCACCAACATATTCATCCTCAACCTTAGCATCGCCGACCTGTCCTACCTGCTTTTCTGCATCCCCTTTCAGTCAACTATTTACATGATGCCGACATGGGTTCTAGGTGCCTTCATCTGCAAGTTTATTCATTATTTCTTCACCGTTTCTATGCTGGTCAGTATTTTCACCTTGTCCGCAATGTCGGTGGACCGCTACATTGCCATTGTTCACTCCAGAAAATCGTCCTCCATCCGTGTGTCAAAGCACGCTTTGATCGGAGTGGTGGTCATTTGGATACTCTCTTTGGCCATGGCAGCGCCAGTCGCGGTCATACACAACATATACCAGAGAGACGAGAATCACACCTATTGCTGGGAAGTGTGGCCGGATCAAAACCAAAAGAAAGTCTATGTTGTTTGCACGTTTGTTTTTGGTTATGTATTGCCCCTGTTGCTGATTTCGTTCTGCTACGCAAAGGTTTTAAATCACCTGCACAAAAAACTCAGAAACATGTCCAAAAAGTCAGAGGCGTCGAAAAAAAAGACTGCCCAGACGGTtcttgtagtggtggtggtgttctgCCTGTCATGGCTCCCTCACCATGTGGTCCACCTGTGGGTGGAGTTTGGCAACTTCCCCTTGACCCAGTGGTCCTTCTTGTTCCGGGTGGCGGCCCACTGCCTGGCCTATAGCAACTCCTCCGTCAACCCTGTCATCTATGCCTTCCTCTCGGAGAACTTCAGAAAGGCCTACAAGCAGGTGTTCAGGTGTCAGATTACCAACTCCCCTCTCAACGAACTCAAGGAGTTCCGCAGCAAGGTGGACAACACACCACCCTCCACCAACTGCACCAACGTCTGATTGGAGGACACCGGGTGCCAGCTCAACTACGGCCATGATGATTGGTTGTTTTCAAGGGGCCTTCTGAGACATATAATGCTATGAGATTCCATGTTTCGATTCAGAGATTGTATGAAGACAATATGAAGAAAACTGGATATGCACTCAAGGTCCACATAGGTCCACATCAGCGCTGTTCCATCATCAGAATGACGCCACACCAGACGATGTGCCATACTGGACATACGATCATATGTGTAGTGAGcatctctcttcctttccctttctctcttgctccctctctctccctctatcttgctttctctctcgttctctctgtcatTATCACAGGAAGATTGCTGAGTCTGACTCTCAGGAATGGAAAGAATGTGGACTTTGATATTTCACTGACCCTCTTCTTATAAATCAAAACTGTGAATGTTTGGTAATTTGCCTTCTTATATGTGCAGATATTTTGTGCATGTGCATATTGTTGGTCCTTCTTAACGCTCTATTTAGGCTGTCTGAAGTAGCTATTGAAATGAGCGTCTATAATATAGCTTCACTACACATTAAAGCCTGAGGTTACTGCTGTATATTGTACATAGTATCCTATCATGGAGTagttttgaattgttaaaaaaataTTAGCTATTGCTCTATTAGATATTGCTCAGAATATAAAAAATGCACACAGTGTAATTTTCTCTTTAAAGTTGAATATTTTTTGAAGAGAAAGCATTTTGTTGTTTGATTGTAATGGCCAATTCTCTTGTTGCGAGTTGCCAATATGTATACAAGGGACATGTTGTCCGTATAACTTAAACCTGTCTTGCCATCTGTAATACAGAGTTTTCAATGGAGAAAAAAACACATGTTGGGACTTTTAATAATACTATTGTATAAACTATTTAAAAATACTATAATGTGTAGTCAATATAAGCCTACTTTATCTTATTTATTAAATTGGTGTATGATATGGAAAGCTTAAGTCCATGTTTTCTGGCGTATTGTTTTGTGATGACTTTGGCTTGTACATTACAACttgtacaggtacagtatgtgGTTTTATCTTAGTGCTAGATCACTGAGCAACCTTGCTTCAAAGGCATTGTGTGGGATCTCGTTACCCTTTGACTTCCATTTCCCCTCATCATTACAGAGTAAACGAAAGAAAAATCTTCAAAGATCAGAGACTGACAAGATTTTGTTTGTCGCTTACAATCAGAAGTAAAGAGAAAAAAACATAACTATTCTCCCAAAAGTACATCCTGCCCCTTTTCACAGCTAATACCACATCCATGTTTGATAGTTTAGTATATGTGAGAGAGATTTGAAAAAGTCACTTCTCATTTTATGTGTCGAAAGCTAGCTAATACTctttaaatatttaaatattttgtttgGTTAACATAATCCAATCAGGGATTGTCTactctatcaatcaatcaatcaaatgtatttataaagccctttttacatcagccgatgtcacaaagtactgtacagaaactcagcattaaaccccaaac

Function

NR:

description
galanin receptor type 1-like

GO:

id name namespace
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004966 galanin receptor activity molecular_function

KEGG:

id description
K04230 GALR1; galanin receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562443.2 True 2920 mRNA 0.41 3 40309178 40319263

Neighbor

gene id symbol gene type direction distance location
LOC110489640 LOC106583530 coding upstream 83846 40115958 ~ 40292372 (+)
LOC110489609 LOC106605074 coding upstream 446658 39821880 ~ 39862520 (+)
znf407 LOC106605077 coding upstream 542800 39569485 ~ 39766378 (+)
LOC110489590 LOC106605080 coding upstream 761815 39540706 ~ 39547363 (+)
LOC110489581 LOC106605172 coding upstream 778320 39527602 ~ 39530858 (+)
LOC110489685 LOC106605069 coding downstream 316836 40636099 ~ 40653382 (+)
LOC110489695 LOC106605067 coding downstream 461763 40781026 ~ 40847759 (+)
LOC110489783 LOC106605064 coding downstream 561911 40881174 ~ 40885140 (+)
LOC110489815 LOC106605058 coding downstream 975418 41294681 ~ 41355200 (+)
LOC110489825 LOC106605056 coding downstream 1134996 41454259 ~ 41460908 (+)
G141613 NA non-coding upstream 15062 40236507 ~ 40294116 (+)
G141522 NA non-coding upstream 301901 40004230 ~ 40007277 (+)
G141507 NA non-coding upstream 324636 39976639 ~ 39984542 (+)
G141503 NA non-coding upstream 340808 39968068 ~ 39968370 (+)
G141799 NA non-coding downstream 86231 40405494 ~ 40406246 (+)
G142202 NA non-coding downstream 113085 40432348 ~ 40432598 (+)
G142204 NA non-coding downstream 114266 40433529 ~ 40433864 (+)
G142312 NA non-coding downstream 186459 40505722 ~ 40505961 (+)
G142314 NA non-coding downstream 186756 40506019 ~ 40506222 (+)
G139179 NA other upstream 2257434 38051359 ~ 38051744 (+)
G139101 NA other upstream 2365166 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 2368464 37919735 ~ 37940714 (+)
G139004 NA other upstream 2485168 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 3907207 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 1220032 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 1649111 41968374 ~ 41969317 (+)
G144661 NA other downstream 2191067 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 3411609 43730872 ~ 43731218 (+)
G146091 NA other downstream 3449444 43768707 ~ 43769162 (+)

Expression


Co-expression Network