LOC110489685 (LOC106605069)


Basic Information

Item Value
gene id LOC110489685
gene name LOC106605069
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40636099 ~ 40653382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562456.2
AAGCTTCTGACTTTAACTGTAACGGTGTGGTACATCCTAGCGGTCGCTCAACGCAATGGGCTGAACCTAGCCCAAGGTttaactctctcacacacagcgcAGTCCCCACACACGGAGCTAAAGGCGAGGGCAGCAACGGCTACATCAAACCTCCCGAGTAGTGCTCCTGTTACGAACCATCAAGTGAAGTCGAAAACGACTTTCATGTCCGACATATTAGAACGTAGATCGATCAGAAAAAAAATTCTAAAGCTCTTTGGAAAGGACCGGGGTCTTCGGCGAGCAACTGGCGGAAGAGAGAGGGGACTTTGGAGAGCAGCTCGAGACAAACGCGCAGCCGGGAGCAAAGCACCACGAGGGGGAAGAGCACACCTAGCCACCCAGCGCTAGTTGGGgtgtattttcttttttttttttataaacgcTCATTATACAAACGATTAGGTGCGTATAGAGGCAAAGAACTATTTCATACTTCATAACTCCGACAAGGCGCGCCGATTCTGAGAAGACGCACATCAAACTTTGAGTGGCAATTCGAACGAGTATGTTCCTTGCTTATCCACTGGCAATCAAACCGAACTTTTACAATTCCCCTTTACAACGGAATTGCATCATCAAGGCGCACTGGGAACAACTCACAACCATCCTCAAAAACTTTATCCGTCCCATCCGCTTCTAGCGGGTGTAGGCGACTGATGTCCATCGGCAaggagttttttgttgttgtttgaacgaAGATGCTGTCAATTATATGAAGATTTAAAAAAGACTGAACCACTTCAGGGACATTAAAAACACTTTCAGATGCACACAGCCACATTCAGGGGGAGTACTCAGTCGGGGGACAAAAGTTATCTAGCCTAAATAAGATGGAGGAAAAGATGGACGGAAAGTATGAGCATTGAGGCAAGCTCTTAGAATTCCGTCATCTAAATCATCACAAGTTCACAACTCAAGTGGAACATACTACTTAAAAGCATGGCTGAAGTATGGGATACACGCAAGAAAAGAATTGCATCGATGAATCTCCAGCAGTGGTGAATCTAAGCTCCGTAGAAAAGGAGAAAAGCTGACCTTCCGCGACGTAGACCCCCCTGAATGCTGGGTGTAACAAGCGAGATTTTGTGTGTTGTTGGAGGAGGTGGATAGCTAGAGACGAGAGACAGATAGTCTGAGAGTGAAGCAGCTAATTGCTTAGTCTGTCCCTCATTACCATATCCAGTGTGTGTCCGCTGGACTTCAGCCAATCCCCCTCACACAGTACCATTAATCGCAATGCATTATTCACTATCATAATTATATACCGACATGCGCAATCCACGCAACAGCAACACCAGCTAATTCCCGTAATTTTTTGCAACCAGACTATTTGtgaacatttttttttcattCGCTCGCTGCTGATGTATCTGCAAAAAGCAGAAACATCTCGCAGCGTATCAGCAGCATGTCCCGTCGCAAGCAAGCGAAGCCACAGCATCTCAAGTCGGACGAGGATCCCACAATAGCCGGGGTGGTGTCCGAAAATGCCACAGGAGAAGTGCTGGATGACTCAGACAGTGGGAATGAGAGCCGTAGTGGGAGTGAGGAGACCCACGTGTGTGAGAAGTGTTGCGCCGAGTTCTTCAAGTGGTCCGATTTCTGCGAACACTTGACGAGCTGCATCAAGAACCCCCTGGTGCTCATAGTAAATGAAAACGAAACCGAACCCTCCCGGGAGTATCCTGCAGAGCCATCGCCCTCGCCAAGCTGCCATAGTGACCAGGCAGACAGTGAGGACGCTGGGGAGGGCAGCAGCCACAGCCCCGGTGAGGACGATGAGGGCGGAGAGATAGCCCTGGAGGGGGGCAGTGCCCTGGAGAAGGAGGACGAGCCCATGGAGCTGTCTCCTCAGAAACCGGTGGACCTCGAAGTGAGTGACGCCTCCCCAGAGCCAGATGGTGCTCTACCTCAGCTTAGCGATCCTGCCCCATCCTCTGTGAAGAGCTACAGCATGCCGAGCACCAACGTCACTCTGGAGACACTACACAGCACCAGCGTGGCAGTGGCTCAGTTCTCCCAGAGTGTTTGTGCCGCGGTGGCCGGCAGTGGGGTCTCCCCCTTGGCCATCCCCATGATCCTGGACCAGCTGATGGCGCTGCAGCAGCAACAGATCCACCAACTCCAACTGATCGAACAGATCCGCAGTCAGGTGGCGTTGATGCAAAGGCAGCCCTCTGTCGCCCAGCTGGCCcagaaccaccaccaccacaacacagttGCTGGCTCCCAGGGGCTGTCATCTTCCAACCAACTACAACAGTTACACAACTTCATCACTCCCCCTGTCCACCAGCTGCCCATCAGGTTGCCCTCACCGCTAAACAGCCTGGgctcctcctccctcacctctGCTATAGATGGGCCCCTCTTCTCCCATACCCAGCAAAGTAGTAATCAGCAGTCAAATTTTCCGATGCCCAACACCACTTCAGCAAACTCCTCTTTCCCACCATCCAGTGGTAATGTGCTGTCATCTCTACTGCCTTCCTGCATGACTTCAATCACACACAGCAGCAGCGGAGCTGGATCCGCTGCTGGAGGAGGCATGAGCAGCAGCATTACAGCTCTGCCAAGGAATTCCAGCAGCCCCCCTTCACTAGGCCACAACAGCCTCCTGAGCACCAGTCCCTCCAATCTACCACTGATACCTCACAGTTCATCTAGTAGTGTCATCTTCCCGAACCCGCTAGCCAGTATAGCTGCCACTGCCAATGCACTTGACCCACTCTCCGCTCTGATGAGGCACCGCAAGGGAAAGCCCCCCAACGTGTCTGTCTTCGACACCAAGTCCAGCTCCGAGGACCCCTTCTTCAAGCACAAGTGTAGGTTCTGTGCCAAGGTGTTTGGCAGTGACAGTGCCCTGCAGATCCACCTGCGCTCTCACACCGGCGAACGGCCCTTCAAGTGCAACATATGCGGAAACCGGTTCTCCACCAAGGGCAATCTGAAGGTCCACTTCCAGAGGCACAAGGAGAAGTACCCGCATGTCCAGATGAACCCTTATCCCGTGCCAGAATACCTGGATAACGTGCCGACCAGCTCAGGCATTCCGTATGGTATGTCCTTCCCCCCAGAGAAGCCGGTGACCACCTGGCTGGACAGCAAACCTGTTCTCCCCACAGTCCCCACCTCAGCCGGGCTCCAGTTccccccaactctccccagtatgATGGGAGGCTACGGTGATTCCCCGAGCCTCACTCCCCTTAGCAGATCACCCCAGaggccctcccctccctccagtgAATGTGCCTCTCTGTCACCTAACCTCTTCACAGAAGCAGGCATGATCACCACCTCACAGTCTCCGCAGCCCAACTTAGGGGGCGACATACCTCCCATTCTGAAACCAGAGGGCATCCACCTACCCCCAAACCTCCCCACTTCCAGGCCTGGTGAGAACAAGACCACCACCGTTACTCAAGTGGTCCTCGCCACCACGGTCACCGCAACCACATCCACTAGCAGCTGTACTGAACCCATCATTGCCCCCTCTGTCTCCCATACAATCCTCCCCATGATCTCTGATCAGTTCAAGGCCAAGTTTCCGTTCGGCGGCCTTCTGGACTCTATGCAAACGTCCGAGACCTCAAAGCTGCAGCAGCTGGTGGAGAACATCGACAAGAAGATGACAGACCCCAACCAGTGTGTCATCTGTCACCGTGTGCTCAGCTGCCAGAGCGCCCTTAAGATGCACTACCGCATTCACACAGGAGAAAGGCCTTTCAAATGTAAGGTCTGCGGCCGAGCATTCACCACCAAGGGCAATCTGAAAACGCACTTTGGGGTCCATCGTTCCAAGCCCCCACTTCGGGTCCAACACTCCTGCCCCATCTGCCAGAAGAAGTTCACAAACGCTGTGGTCCTGCAGCAGCACATCCGCATGCACATGGGGGGCCAGATCCCCAACACCCCTCTGCCTGAGTCTCTCCAGGAGATGGACACCGACCTCTCCTTTGATGAGAAGAGCTTAGATGCCATGAGCAACTATGATGACGAGCTACTGGATGAGATGGAGGCAGCTATGGAGGACGAAGCAGAGCTGAAAGAAGGAGAAGAGATGATGGACCCATCCAAACCTCTCCATCCATATTCAGGAATGTCCCCTGGTCGCTCCCCACCTACCTCTGTCATCTCCAGCATCGCTGCTCTGGAGAACCAGATGAAGATGATCGACTCCTCTGTCAATATGAGCCGCTCGTTTGGGCTGAAGCCCATGCAGAACTGTGGCCAGTTTGGAGGGGAGAACGACTTCTTCAACAATGACTCGCTGTATGCCTCGGGGGACCTGGAAGGCCAGAGTGTGGGAAGCCCAGCACTATCTGAGTCCTCAGGGTCCATGCAGCCCATCTCCCCTGCTCACAGTCACCCTGAGAGTCATCGATCCAAGTCCCCAGCCACACTCAACCATAACAGAAGCACTGCAGCAGATGAGGGGCAGGAGAACAACGGGATGGCTACAGTGAAATCTGAGAAGTCAGATACCCCATCCCCGGCACCTGTGTCTGAAGGTAATGGGGCATTGGACCTGACTGCTAGCATAACCCAGCCTAGCAGGCACTTCATCAAGGAGGAGAACCACTTCAACATGATGTTCCTGAGCAGAGATAGAGgtctgagCAACTCTAGCTTGCTAAACACAGCATCCAACATGATCAAAATGGAGATGAATGGGCACAGGCACAGCAAGCCCATGTCACTGAATGACGGTCCTTACATGCCCGTGGGCATCCAAGTGCCCGCTTCTGCACCCCAGACCAACATGAGCCCCAGTATCACCCCCATGCTGGCACCGCCAACTCCCCGTCGCACCCCCAAGCAGCACAACTgccacaactgtgggaagaacTTCTCCTCAGCTAGTGCCCTGCAGATccatgagcgcacacacacaggagaaaaaccaTTTGGCTGCTCGATCTGTGGAAGAGCCTTCACCACTAAAGGCAACCTGAAGGTGCACATGGGCACCCACATGTGGAACAATGCACCAGCCCGTCGTGGACGCCGTCTCTCCGTGGAGAACCCCATGGCCTTGCTGGGCGGGGACGCCATGAAGTTTAGTGAGATGTTTCAGAAGGACCTGGCGGCGAGGGCCATGAACGTAGACCCTGGCTTCTGGAACCAGTATGCTGCCGCCATCACCAACGGCCTGGCCATGAAGAACAACGAGATCTCCGTCATCCAGAATGGAGGCATCCCCCAGTTGCCCATCAGCCTGGGTGGAGGAGGTATGACCTCGCTAGGGGCCATGTCAGGAGGTATGGACCGTATGGACCGGGTGAATGCCAGTAGCAGCCCTCCCATGACTGGGCTGGATAAGACAGTTCTGGAGGTTGGGGCTAGACGCCCCTTCGCTCGATTTATGGAGGAAAATAAAGAGATTGGGATCAATTAAGGACTTTATTATTATTAAGGAAAGGAAAGAAACTGCTAATCCAGTTTGAACTCTTATGTACTATATTATGTACAGATTACGTTTTTATTTGGTTTGGTTTTTGAAATATAATATTTAGTATTGGTTAGAGGTCTTTGCCTTTCGCCCATTCACCCCTCATTGATATTTCGCTCGTACGAAGAATACTTTGTCTCTTGTTTGAGAATATGTCGTCTTGCAAGATTTGCATGGTACTTATTGGTTTCAATCAGTATGTTTGACTGCTTTTAAGGATTATTTTTGAAAAGTAATATCTTGACTCAATTGTGATGGGCAAGGACTAAAATTAAGCTGAGCGAGCTCTTGTACGTGCATAGACTGACTAGCTGCTGTTTGGCTAATGTTTATGTTTGCTCACAAAGAGCAAGGGACTGAAGTAAATTGGAATTATGGTGTTACTGCGCTCGCCTACAATTTTTTTCTCATgaagtagaaaacttgaaaaaaTGTTTCAACTATTTTAATCTTTACATTTAGTCTCCCAGCATTGTCTTATAATATTGTCCTGTGTCTTTAGTATTTATGatattgacaacaaaaaaaagcgGGTATAAGAAAATATATTTAATGACCCCAGCATTTTATTGATCCTTTTTTTCTAAACTGCAAACTTCATTTATAAATATCTCTTTCAATAAAGACAACATGTCATTTCAGTTGTACGACAGAGACACATTGTGAAGTTTTATTTGGATATCCAGCCAAGACTATGTGCAACATGTTTGGATGCACAGTGAAGAAGCGGAGATATCTGAAGCTGCTATTATCACAAACCTGCTTTTAACCTtttgaaataaatacatgtgtATAGAAATACAGACAACTCTATAACAGGTATGCATATTTTGTACCACATGAAAATAGACATCCTTTGAGAGTATTTGTCATGTTTGTGAATGCACTTTTTAAACGAGACGTTTTTGTCTGTGACTTATCGTTCGTCTTTGACTGAGTTGTCGATCACAAATGGTTTTAATTGTTTTCAGCGTACCACTCCTACTAGAGTGGCCCTCTGGTACGGCCTCTTATGCTACTCATCTGAGTACAACCTCATCCACTCAATCAAATTCTTctccaataaaaaaaataataatagagaACAGGTCAC

Function

NR:

description
sal-like protein 3

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562456.2 True 6590 mRNA 0.50 4 40636099 40653382

Neighbor

gene id symbol gene type direction distance location
galr1a LOC106605071 coding upstream 316836 40309178 ~ 40319263 (+)
LOC110489640 LOC106583530 coding upstream 410767 40115958 ~ 40292372 (+)
LOC110489609 LOC106605074 coding upstream 773579 39821880 ~ 39862520 (+)
znf407 LOC106605077 coding upstream 869721 39569485 ~ 39766378 (+)
LOC110489590 LOC106605080 coding upstream 1088736 39540706 ~ 39547363 (+)
LOC110489695 LOC106605067 coding downstream 127644 40781026 ~ 40847759 (+)
LOC110489783 LOC106605064 coding downstream 227792 40881174 ~ 40885140 (+)
LOC110489815 LOC106605058 coding downstream 641299 41294681 ~ 41355200 (+)
LOC110489825 LOC106605056 coding downstream 800877 41454259 ~ 41460908 (+)
LOC110489834 eny2 coding downstream 885858 41539240 ~ 41541654 (+)
G142372 NA non-coding upstream 50573 40584675 ~ 40585526 (+)
G142314 NA non-coding upstream 129877 40506019 ~ 40506222 (+)
G142312 NA non-coding upstream 130138 40505722 ~ 40505961 (+)
G142204 NA non-coding upstream 202235 40433529 ~ 40433864 (+)
G142202 NA non-coding upstream 203501 40432348 ~ 40432598 (+)
G142612 NA non-coding downstream 100110 40753492 ~ 40753751 (+)
G142643 NA non-coding downstream 123816 40777198 ~ 40777407 (+)
G142660 NA non-coding downstream 149993 40803375 ~ 40803591 (+)
G142733 NA non-coding downstream 270930 40924312 ~ 40924529 (+)
G139179 NA other upstream 2584355 38051359 ~ 38051744 (+)
G139101 NA other upstream 2692087 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 2695385 37919735 ~ 37940714 (+)
G139004 NA other upstream 2812089 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 4234128 36354883 ~ 36405310 (+)
G143938 LOC106605049 other downstream 1314992 41968374 ~ 41969317 (+)
G144661 NA other downstream 1856948 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 3077490 43730872 ~ 43731218 (+)
G146091 NA other downstream 3115325 43768707 ~ 43769162 (+)

Expression


Co-expression Network