LOC110489695 (LOC106605067)


Basic Information

Item Value
gene id LOC110489695
gene name LOC106605067
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40781026 ~ 40847759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948320.1
TGAACAGGAGGTGTTTTCCAGCTTTAAAAGGGATGGAGCCAGCCCCTTCTGACATGCCCTGTGTCACAGCTACCAGGAGTCTCAGGAAATCTTAATTAGGCTAAAGCATAACAAAACGACAGCAAAACTCATCTAACCATCAGACCAACCCCGAGTGTGTGAGAAGTGCTATGAAGATAACCCTTTCGCATACTCTACTCTCTTTTCCATCTCAGTTTCTCTTGGAGTGCTGTCACGTAGATGAAAGTGTTTGAATTAATCTCAAATCAGCATTCGAGTTTACTTTTTTATTGACAAATAAtgcgtttatttttgttttgattAATGCACATTTCTACAGCCTGAAATCGTTTTTTTTTCTCGCAGTTCTCATATGATACTGCCTGTGATATTATTGTCAACCGTCACCACCACAAAAGTAGACCAATCGCAAGTTGAATGCAGGATATCAGCTGTTTGAGATTCAGCTCCAAATTCAACTTTGGACCAGTCCTCCCAGCGGCTTTGGGAAAGGAACGAGGATTGCAGTTTCTCAACTCTCTCGCTACCGAGATGAAGTCTGCAGAAGAAGATGCATATAGCTACACTCCAAACGTCAGCCTGTCCCTGCCACTGGGCATGGGAAATCCCTGTCTGGCCACCCAGTACCACACACTGCAGTCCAGCCCCATTATCTCCGTGTCCTCCTGCCACCAGACAGGCTACGGTCTCCACGATCACAACAACCACAACCCAGCCCAGGGCTACTACATGTCCCACGGCCTGAGGCCTAACGGGGCCCCGGCCCTGGAGAGTCCTCGCATCGAGATCACAGCGTACCACCAGTACcctgaggaggaggtggaggagagcagCAGCATGGACCACATCGTCCACCACAAGCGGGGGGTCAACTCCATTGTGACCCTGACGCTACCAAACGGCGATGGCTACCGCGACCCCAGTTGCCTCAGCCCGGCCAGCAGCGTGTCATCACGTAGCTGCAACTCGGATGCGTCGTCCTACGAGTCTGGCTTTTACAACTATGACAACTCATCCCAGAACTCGCCATGGCAGTCTCCTTGTGTCTCTCCGAAAGgctcgtcctctctcctctcctgcccacACGCTCCTCTCGGCCCCCCCTCAACCTCCCCACGCCACTCGCCATCCACCTCCCCCCTGATCGGGGCTCAAGCTGAAGAGGGCTGGGTGGGACAGGCCTCCTGTGGAAGCTCCAGGCCCAACTCCCCGGCTTGCAGCGGAGGAGGTGGCAGTGTTGGCGTGGGGAAGAGAAAATACAGCTTCAACGGCACCACCTACAGACAGCCAACCTACTCGCCCAACCAGTCGTCCACGCCTTCCCCGCGCGGTTCGCCCAGGGTCAGTGTCACAGACGACAGCTGGCTGGCCAACACCAACCAGTACACCAACTCTGCCATCGTGGCAGCCATCAACGCCCTCACCACCGACGGACTGGTCGACATGGGCGAGGGTGTCCCCGTCAAGGCCCGCAAGACCAACCTAGACCACAGCCCCACCATGAGCCTGAAGACGGAgccgggaggagaggagatgggccTTGGGAGCGAGCTCCTCCAGGAGGACTACATCTCCCGCCTGCCTTTCAAGAAGGAGAGCTACTGTGGGGGCTTCCTAGACGTGCCCCAGCACCCCTACTCCTGGTCCAAGCCAAAGCCCTACCTCAGCTCCCTGCCCGCCCTGGATTGGCAGCTGCCATCTTGCTCTGGCCCGTACAGTCTGCAGATCGAGGTGCAGCCCAAGTCCCACCACCGTGCCCACTACGAGACAGAGGGCAGCCGCGGGGCAGTCAAAGCTCCGTCCGGAGGTCATCCAGTCGTACAGCTTTACGGTTACATGGAGAGCGAGCCCCTTACCCTGCAGCTGTTCATCGGGACCGCAGACGACCGCCTCCTGCGACCGCACGCCTTCTACCAGGTCCACCGCATCACGGGCAAGACTGTCTCTACCGCCAGCCACGAGGCCCTGCAGTCCAACACCAAGGTGCTGGAGATCCCTCTGCTGCCCGAGAACAACATGAGAGCCATCATTGACTGTGCAGGGATTCTGAAGCTGCGGAACTCCGACATCGAGCTGCGCAAGGGCGAGACGGACATCGGGCGCAAAAACACACGCGTGAGGATGGTGTTCCGTGTGCACATCAACCAGCCCAATGGCAGGACCATCTCCCTACAGGCCTCCTCCAACCCCATCGAGTGCTCCCAGCGCTCGGCCCAGGAGCTTCCCCTGATTGAGAAGCAGAGCCTGGACAGCTACCCCGCCACGGGGGGAAAGAAGATCCTCCTGAGTGGACACAACTTTCTGCCAGACTCCAAGGTGGTGTTCGTGGAGAAGGCCCAAGATGGACACCACCTATGGGAGACAGAAGCCAAAGTTGACAAGGACTCCTTCAAGTCTACCGCGCTGGTGGTGGAGATCCCCCCCTACAGGAACCAGAGGATATCCAGCCCAGTGCAGGTCAACTTCTACGTCTGCAATGGCAAGAGAAAGAGGAGCCAGTACCAGCGCTTCACCTATCTCTCACCAAATGTCCCGATAATAAAGTCAGAACCGAATGATGAGTATGAGCCTCTGGGGGCTCAGGGGCTGTCTGTTCATTCCAAGCTCTACTATGGCCAACCCAGGCTCACTCCTATCATACCTGTGGGGGACGCTGACACATGCCTGGTCGGGGTTTATTCTCCCTGCCCGCCTTGCCATGGCAGCATTGGCAGCatgcccccctcctcccccaggtcCAGCCCAACACTGCACGACCTGTCCCCCGTGTCTTACCCCAAGTGCCTCTCCACCAGCCCTACGCACGCCCACAATGGCCCCTTGGCGTCCGCCATCCAAGAGACGCCAGGGCTGCGCCCAGCGCCGCTGGTCTGCCCTTCCTCACCCGACCAAGCTCCACTGGGCATGCTTCACTCCCAGGGCAACAGCCCGCATCACCTTGGTAACCCCAGTCCCCATGGCTTCCACCCGCTCTACCACAGCAGCAGCCCCTCCACCTCCCCAGGGTCCCACCCCTCCACTCCAGAGGGGGCAGCAGAGAGCGCGTTCGCCCAGGCACCAGATTACAGCCCCACCCAGGGACAGAGCCAGACTCAGGCCAGGAGCAGCCCTCCCAGCCTGCTGCCGGTGGACGCCAGCCCCCGCGACCTAGCCGTCACTGTCAAGCGGGAACCCCAGGATCTGGACCAGATGTACCTGGACGATGTCAATGAGATCATCCGAAACGACCTGTCCAGCATCTCAGTGCATCTCAGTACATAAACTCTCTGCAGATACAAAAAGGCACAGAGGCAAAGGAACCACAAACCAAAGCTCCTATATCCACATGAGGAACCCCTTAACAGAGAGCTTTCACATTACCACTTCCTCATTGCTACATTTCCCAGATGCCTGATTCGCTTGCCCCTCGTGACGCTGCAGAACGATTGGTCGACTGGTGGTCATTGACAGGAAACTGCAAAGCTCCATATGAACGAATGTTATAATATAATGTGAGACGGCCTTTGATATAATGGGAGGGACTGTGACAATTACTACACTTGCCTTAAATGACAACTCTTGCTCTTCCATGGACCAAACAGCTCAGTAAGACTGAATTACGTGTTTCTTTACTGATTGCCTCTTCATTATGTGTGTTGGACTCTAATATACGGACAAGCCAATGGGTGTGTCATATGTTGGTCAGAGCGTCCTGGCAAACCACAGCAACCCAGGCGGTGCCTTACAACATCACTCACTGACTAGAATGCAGTGTCACTTCGATCACGTCAATCATTTGTTTACAGGGAAACTAAAAATAGCTGGGAAATAAGAATGGGACGTGTATAGGTTAGTTTTGTgtatcagttttttattttttattatgtcCTTGTCCATTTATACCGAATGTTGTGTATGATATTCTTTGTATAAACATGTATTTGAAATGTACTTTGTGTATGCCTTAAATCTATTATGCAGTTTCGCCGTTTAGCTCCtcgttgttttgtttttttcagcGTCTTCCTTTTTCTGAAGATCCGATGTGTACCACCTCGTTGCTAGCGTCTGTCTTGACACCTAGTGCCTCTTCTATCCTTCCGCTCTGGcctacctctccctcttccctttaaaaaataaataaaaaatattcagaACTGCTTAGACCATCAGGAGAGAGCCTCCTACACATATCGAAGGAGAACAACTGGGTTGGCATGTACATACCATAGGATGATAAGGACAATCTAAGACTTCATCTTTATTCCCCTTGCCTGTATAATACAGCTGGAGAAGGGTTGGGCCTTCAGCCTTCAGCTTGGCAATAATTGGTTTCCTCATATCAAAGGATTTCTTACCTACTTATTGTTCGAGCTTCTTCTTTCTTTACTGTTAGAGACAGTGGCTCAGTAGGCTTCAGTCAGTATGTAATCTACTTTACCATAGTAGCAGCACGGCTTTCTCTTCCGTCACGACCAAATGTTATAGGATCTAGATTCACATGCTTAGTATGATAGGACAGACAGCCCTTACTGAGCCACGGGGTCTCTTCTTATAAAGGATGACAGATCCGCCATCGTTTTCTACGTCGTCTAGTGCAATGTCTTTCTTCAGCATGCAGAGAACACTAATGAGATATATGATTTAGCTTTACAATACCATTAAGTGGCTTCACGAATACATGTGGACCATATGATAGCATGGCTCTATGTAACAGATTGACGTATTGTGCCTTATTCGCTATTGTCTCTCTGCTACAACATGATTGTAACTCTTACTCATTTTCTATCCAGGCACAAAGGTGAAACATATTTCCTCCCTAATATGAAATATTTATGGAAATTGAAATGGTGTTTTATGTACACTCAATGTGttctataaaaaataaaaaaaatgaatcaaTAAATGACATAACGATGACAA
>XM_036948326.1
CTCCTCAAAGTCACATTAGGTGGAGTGAGAAAGAGATCTGCATCCTCAGCACTAGTGGAGGGTCTGTCAGGAACGAGCACCAGAAAGGAACAGCATCTCTAAAGACAAAAGGAGAagacaaaacagacagacagacagagacagacagacaacagttaGAGCTGAGGTGTTGGAGGCTGTTCTCATCACCCTTAAGCTGAGGCTAAGATGAGCTCCCTTCGTGAAGAACCGGAGTTTGACTTCGACTTTTTGTTTGAGTACAGCCAAGGGGGAGAGTGTGGCCACAGGCCTGACAGAGATGCATATAGCTACACTCCAAACGTCAGCCTGTCCCTGCCACTGGGCATGGGAAATCCCTGTCTGGCCACCCAGTACCACACACTGCAGTCCAGCCCCATTATCTCCGTGTCCTCCTGCCACCAGACAGGCTACGGTCTCCACGATCACAACAACCACAACCCAGCCCAGGGCTACTACATGTCCCACGGCCTGAGGCCTAACGGGGCCCCGGCCCTGGAGAGTCCTCGCATCGAGATCACAGCGTACCACCAGTACcctgaggaggaggtggaggagagcagCAGCATGGACCACATCGTCCACCACAAGCGGGGGGTCAACTCCATTGTGACCCTGACGCTACCAAACGGCGATGGCTACCGCGACCCCAGTTGCCTCAGCCCGGCCAGCAGCGTGTCATCACGTAGCTGCAACTCGGATGCGTCGTCCTACGAGTCTGGCTTTTACAACTATGACAACTCATCCCAGAACTCGCCATGGCAGTCTCCTTGTGTCTCTCCGAAAGgctcgtcctctctcctctcctgcccacACGCTCCTCTCGGCCCCCCCTCAACCTCCCCACGCCACTCGCCATCCACCTCCCCCCTGATCGGGGCTCAAGCTGAAGAGGGCTGGGTGGGACAGGCCTCCTGTGGAAGCTCCAGGCCCAACTCCCCGGCTTGCAGCGGAGGAGGTGGCAGTGTTGGCGTGGGGAAGAGAAAATACAGCTTCAACGGCACCACCTACAGACAGCCAACCTACTCGCCCAACCAGTCGTCCACGCCTTCCCCGCGCGGTTCGCCCAGGGTCAGTGTCACAGACGACAGCTGGCTGGCCAACACCAACCAGTACACCAACTCTGCCATCGTGGCAGCCATCAACGCCCTCACCACCGACGGACTGGTCGACATGGGCGAGGGTGTCCCCGTCAAGGCCCGCAAGACCAACCTAGACCACAGCCCCACCATGAGCCTGAAGACGGAgccgggaggagaggagatgggccTTGGGAGCGAGCTCCTCCAGGAGGACTACATCTCCCGCCTGCCTTTCAAGAAGGAGAGCTACTGTGGGGGCTTCCTAGACGTGCCCCAGCACCCCTACTCCTGGTCCAAGCCAAAGCCCTACCTCAGCTCCCTGCCCGCCCTGGATTGGCAGCTGCCATCTTGCTCTGGCCCGTACAGTCTGCAGATCGAGGTGCAGCCCAAGTCCCACCACCGTGCCCACTACGAGACAGAGGGCAGCCGCGGGGCAGTCAAAGCTCCGTCCGGAGGTCATCCAGTCGTACAGCTTTACGGTTACATGGAGAGCGAGCCCCTTACCCTGCAGCTGTTCATCGGGACCGCAGACGACCGCCTCCTGCGACCGCACGCCTTCTACCAGGTCCACCGCATCACGGGCAAGACTGTCTCTACCGCCAGCCACGAGGCCCTGCAGTCCAACACCAAGGTGCTGGAGATCCCTCTGCTGCCCGAGAACAACATGAGAGCCATCATTGACTGTGCAGGGATTCTGAAGCTGCGGAACTCCGACATCGAGCTGCGCAAGGGCGAGACGGACATCGGGCGCAAAAACACACGCGTGAGGATGGTGTTCCGTGTGCACATCAACCAGCCCAATGGCAGGACCATCTCCCTACAGGCCTCCTCCAACCCCATCGAGTGCTCCCAGCGCTCGGCCCAGGAGCTTCCCCTGATTGAGAAGCAGAGCCTGGACAGCTACCCCGCCACGGGGGGAAAGAAGATCCTCCTGAGTGGACACAACTTTCTGCCAGACTCCAAGGTGGTGTTCGTGGAGAAGGCCCAAGATGGACACCACCTATGGGAGACAGAAGCCAAAGTTGACAAGGACTCCTTCAAGTCTACCGCGCTGGTGGTGGAGATCCCCCCCTACAGGAACCAGAGGATATCCAGCCCAGTGCAGGTCAACTTCTACGTCTGCAATGGCAAGAGAAAGAGGAGCCAGTACCAGCGCTTCACCTATCTCTCACCAAATGTCCCGATAATAAAGTCAGAACCGAATGATGAGTATGAGCCTCTGGGGGCTCAGGGGCTGTCTGTTCATTCCAAGCTCTACTATGGCCAACCCAGGCTCACTCCTATCATACCTGTGGGGGACGCTGACACATGCCTGGTCGGGGTTTATTCTCCCTGCCCGCCTTGCCATGGCAGCATTGGCAGCatgcccccctcctcccccaggtcCAGCCCAACACTGCACGACCTGTCCCCCGTGTCTTACCCCAAGTGCCTCTCCACCAGCCCTACGCACGCCCACAATGGCCCCTTGGCGTCCGCCATCCAAGAGACGCCAGGGCTGCGCCCAGCGCCGCTGGTCTGCCCTTCCTCACCCGACCAAGCTCCACTGGGCATGCTTCACTCCCAGGGCAACAGCCCGCATCACCTTGGTAACCCCAGTCCCCATGGCTTCCACCCGCTCTACCACAGCAGCAGCCCCTCCACCTCCCCAGGGTCCCACCCCTCCACTCCAGAGGGGGCAGCAGAGAGCGCGTTCGCCCAGGCACCAGATTACAGCCCCACCCAGGGACAGAGCCAGACTCAGGCCAGGAGCAGCCCTCCCAGCCTGCTGCCGGTGGACGCCAGCCCCCGCGACCTAGCCGTCACTGTCAAGCGGGAACCCCAGGATCTGGACCAGATGTACCTGGACGATGTCAATGAGATCATCCGAAACGACCTGTCCAGCATCTCAGTGCATCTCAGTACATAAACTCTCTGCAGATACAAAAAGGCACAGAGGCAAAGGAACCACAAACCAAAGCTCCTATATCCACATGAGGAACCCCTTAACAGAGAGCTTTCACATTACCACTTCCTCATTGCTACATTTCCCAGATGCCTGATTCGCTTGCCCCTCGTGACGCTGCAGAACGATTGGTCGACTGGTGGTCATTGACAGGAAACTGCAAAGCTCCATATGAACGAATGTTATAATATAATGTGAGACGGCCTTTGATATAATGGGAGGGACTGTGACAATTACTACACTTGCCTTAAATGACAACTCTTGCTCTTCCATGGACCAAACAGCTCAGTAAGACTGAATTACGTGTTTCTTTACTGATTGCCTCTTCATTATGTGTGTTGGACTCTAATATACGGACAAGCCAATGGGTGTGTCATATGTTGGTCAGAGCGTCCTGGCAAACCACAGCAACCCAGGCGGTGCCTTACAACATCACTCACTGACTAGAATGCAGTGTCACTTCGATCACGTCAATCATTTGTTTACAGGGAAACTAAAAATAGCTGGGAAATAAGAATGGGACGTGTATAGGTTAGTTTTGTgtatcagttttttattttttattatgtcCTTGTCCATTTATACCGAATGTTGTGTATGATATTCTTTGTATAAACATGTATTTGAAATGTACTTTGTGTATGCCTTAAATCTATTATGCAGTTTCGCCGTTTAGCTCCtcgttgttttgtttttttcagcGTCTTCCTTTTTCTGAAGATCCGATGTGTACCACCTCGTTGCTAGCGTCTGTCTTGACACCTAGTGCCTCTTCTATCCTTCCGCTCTGGcctacctctccctcttccctttaaaaaataaataaaaaatattcagaACTGCTTAGACCATCAGGAGAGAGCCTCCTACACATATCGAAGGAGAACAACTGGGTTGGCATGTACATACCATAGGATGATAAGGACAATCTAAGACTTCATCTTTATTCCCCTTGCCTGTATAATACAGCTGGAGAAGGGTTGGGCCTTCAGCCTTCAGCTTGGCAATAATTGGTTTCCTCATATCAAAGGATTTCTTACCTACTTATTGTTCGAGCTTCTTCTTTCTTTACTGTTAGAGACAGTGGCTCAGTAGGCTTCAGTCAGTATGTAATCTACTTTACCATAGTAGCAGCACGGCTTTCTCTTCCGTCACGACCAAATGTTATAGGATCTAGATTCACATGCTTAGTATGATAGGACAGACAGCCCTTACTGAGCCACGGGGTCTCTTCTTATAAAGGATGACAGATCCGCCATCGTTTTCTACGTCGTCTAGTGCAATGTCTTTCTTCAGCATGCAGAGAACACTAATGAGATATATGATTTAGCTTTACAATACCATTAAGTGGCTTCACGAATACATGTGGACCATATGATAGCATGGCTCTATGTAACAGATTGACGTATTGTGCCTTATTCGCTATTGTCTCTCTGCTACAACATGATTGTAACTCTTACTCATTTTCTATCCAGGCACAAAGGTGAAACATATTTCCTCCCTAATATGAAATATTTATGGAAATTGAAATGGTGTTTTATGTACACTCAATGTGttctataaaaaataaaaaaaatgaatcaaTAAATGACATAACGATGACAA
>TU163841
CAACGGCACCACCTACAGACAGCCAACCTACTCGCCCAACCAGTCGTCCACGCCTTCCCCGCGCGGTTCGCCCAGGGTCAGTGTCACAGACGACAGCTGGCTGGCCAACACCAACCAGTACACCAACTCTGCCATCGTGGCAGCCATCAACGCCCTCACCACCGACGGACTGGTCGACATGGGCGAGGGTGTCCCCGTCAAGGCCCGCAAGACCAACCTAGACCACAGCCCCACCATGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948320.1 False 4923 mRNA 0.52 10 40781026 40847759
XM_036948326.1 False 4650 mRNA 0.53 10 40783361 40847759
TU163841 True 239 lncRNA 0.34 1 40785940 40786178

Neighbor

gene id symbol gene type direction distance location
LOC110489685 LOC106605069 coding upstream 127644 40636099 ~ 40653382 (+)
galr1a LOC106605071 coding upstream 461763 40309178 ~ 40319263 (+)
LOC110489640 LOC106583530 coding upstream 555694 40115958 ~ 40292372 (+)
LOC110489609 LOC106605074 coding upstream 918506 39821880 ~ 39862520 (+)
znf407 LOC106605077 coding upstream 1014648 39569485 ~ 39766378 (+)
LOC110489783 LOC106605064 coding downstream 33415 40881174 ~ 40885140 (+)
LOC110489815 LOC106605058 coding downstream 446922 41294681 ~ 41355200 (+)
LOC110489825 LOC106605056 coding downstream 606500 41454259 ~ 41460908 (+)
LOC110489834 eny2 coding downstream 691481 41539240 ~ 41541654 (+)
LOC110489853 sybu coding downstream 846678 41694437 ~ 41710790 (+)
G142643 NA non-coding upstream 3619 40777198 ~ 40777407 (+)
G142612 NA non-coding upstream 27275 40753492 ~ 40753751 (+)
G142372 NA non-coding upstream 195500 40584675 ~ 40585526 (+)
G142314 NA non-coding upstream 274804 40506019 ~ 40506222 (+)
G142312 NA non-coding upstream 275065 40505722 ~ 40505961 (+)
G142733 NA non-coding downstream 76553 40924312 ~ 40924529 (+)
G142735 NA non-coding downstream 78569 40926328 ~ 40926634 (+)
G142707 NA non-coding downstream 80460 40928219 ~ 40928482 (+)
G142706 NA non-coding downstream 89593 40937352 ~ 40940688 (+)
G142737 NA non-coding downstream 93419 40941178 ~ 40941802 (+)
G139179 NA other upstream 2729282 38051359 ~ 38051744 (+)
G139101 NA other upstream 2837014 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 2840312 37919735 ~ 37940714 (+)
G139004 NA other upstream 2957016 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 4379055 36354883 ~ 36405310 (+)
G143938 LOC106605049 other downstream 1120615 41968374 ~ 41969317 (+)
G144661 NA other downstream 1662571 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 2883113 43730872 ~ 43731218 (+)
G146091 NA other downstream 2920948 43768707 ~ 43769162 (+)
G142660 NA non-coding downstream 17197 40803375 ~ 40803591 (+)

Expression


Co-expression Network