LOC110489712 (LOC106605066)


Basic Information

Item Value
gene id LOC110489712
gene name LOC106605066
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40854215 ~ 40861194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562506.2
GACTGGTTCATATGCTCCAGCTACATAATGCAGTATTGGATCCAATTACGCAGCCCAACATTCATCTGAATCAGGAGACAATCATTAGACCAGAGCAAACTAAAGAAAATGTTAGCTGACTGAATCCATATGTGAGAAAAGGGTAGAGGCATGATGCACTCCAAACAGAGGATTGTCGACAACATTCCAGGTAAACGCTGCAGATGCCAActcaattggaaattacctttGAATGTCAAGCGAGCTGTAATCCGGTTATGGATTGAACCCAGCCAAAATTGTGTCATGTCAAATTAACAATTAGAAAAGATCAACAGCACAATATGACTGTGACAACATCTGTAGGCGCCATACTAGAGGGTAGAACATAGAGATAAACACATGTATCAATCTCTATGGGGTAAACACATTTAATGACTCTCCAAGGATTCAAGGCTGTTGGAGAGACGTGCTGAGAATATGGGACAGGAAGAAGATTGAGCAAACAAGTCAATCCTGCTTTTCATGTGTTTTGGGTGTGTTGTCTTACAGTCAAGTCATAGACATTACAGCTACACAGAGTGGTCAAAGTAGCATATACTGCATTTCCTTTGAGTAGGTTACTCAGTTACTCAGCACAGTGACAACTTGTTTCATCATCAGCCTTTCAGGTCAGTGCAAAAGGAAACCTGTACTGGAAACTAGGAGCAGTGACACTGTTAGTAGTGTCACAGTCTCAGGTTACAGTCTCCTAAAAAAAACTATCTGGAGTAGTCAGAACTGCCCTCTGACATTCTGTTATAAATACACAGCTTCTTATGACTGGTGTGTAGTAGAGTACTTGGCagctgcctccctctccctctctctctctctctcttgctctccctgtttctctcacgCTACAGCCAACGTTTTCTGTTTAGGGGGGGCAGAGCCAAGGTCATATTTTctaggggtggaggagagggggagggtacGTAGTTGACCCCTCCCCCTTCTGCTACTGCAACTTTCTCTAGTGCTCTAGGGGCTGCAGGGAGGCAGAGCTGCAGAGCACATGGCGAAATTATTTTTCGAACGAGGCTCCTTTAAATCCGGGGATTACGGTGTCATAGACAAGAGGAGCCGGTGTACTTCCTGTTCTGTCAATTGAATGGGATACACAGAATTCGTGAGTGTGTATGTAATAGCGATAACGAGGGGGGAGGGAATATGAACTGAATGTACACACTTGCCGGATAATGTAATAATACTCTGATCACAGTGGAGTGAGAAGTTACCcaagagagaaggagatataATAGGCAGTCCCACTCCATCACAAGGTCCTTTATGCAAGTTGTTTactggctgtgcccctgcccttCACCATGACTCTCCTAACCCACGTGCTGGCATGTCTCTTTGGCATGGGCTCCTGGGTGGCCATCAACGGGATGTGGGTGGAGCTGCCCCTCATAGTGCCCGAAATCCCAGAGGGTTGGTACCTGCCCTCTTACCTCACTGTGCTCATCCAGATGGCCAACGTGGGGCCCCTTTTCGTCACCCTCATGCACCGCTTCCGCCCGGGCAAGCTGGACGAGCGGCCCGTCATCTACTCCATAGTGGGCCTGGGCGTGGTCGCCACCTTCCTCCTGGCCTTCTTCTGGAAGCACACGGTGTCCCTAGCGGGCGCTACGCATAGTGTCCCCCTCCTAGTGCTCTGTTTCCTACTCTCTGTGGTGGACTGCACCTCCTCGGTCACCTTCCTTCCCTTCATGATGCGCCTCGGGCCCCAGTACCTCACTACGTACTTTGTAGGGGAGGGCGTTAGTGGCTTGGTGCCTGCCATAGTGGCTCTGGTGCAGGGGGTGGGGGTGGTTCACTGTCGGAATGCTACAGTGGCTAGCTTAGCCAATGGGACCTTAGGGATTAACTCCACGGTAGGGGCCAGTGGAGAGCTCCAGGCTCAATACCAGCCCGCTAACTTCTCTGCCCaggtcttcttcctcttcctcagtgCCATGATGGTGGTGTGTCTGGCCGCCTTCCTCTTGCTCAACCACCACCCGGCCGTGGCCAGGGAGAGGAAGCGCGAGCACTACTTCAACAGAGGCCTGGCAGAGGAGAAGAGTGACCAAGCCCTGTCCCTGTCTCACAGACCTCAAGAGGAGAAGCCCATGATCAGTTCTCCGGATGGCCACCGGAGAGCCCGGCAGAGCTCCTTTGGGACGGGCTTCTACAGTGGGCCGGAGGTGACGTTCATCTTTGTGGTTCTGGCCTGGGTCAATGCCCTGACCAACGCAGTGCTGCCCTCAGTGCAGTCTTACTCCTGTCTGCCTTACGGGAACCAGGCCTACCATCTGGCGGCCACCATGGCAGCCGTGGCCAACCCCGTGGCCTGCTTCATCGCCATGTTCCTGCCCTTAAGGTCGTTGGTGCTGATTGGGCTTCTGACAATAGTTGGGACAGGGTTTGGTACTTACATCATGGCCATGGCTGCACTGAGCCCCTGTCCTCTACTGGTTCACAGCGTCTCAGGCACCGCACTCATAGTGATCGCCTGGATGTTGTTTGTCCTGACCCTCTCCTATGTGAAGGTGATCATTGGGGTGATCCTTCGGGATGAGGGCCACAGTGCCCTCGTGTGGTGTGGAGCAGTAGTACAGCTTGGCTCCATGCTGGGTGCCCTGTCCATGTTTCCCTTGGTCAGTGTCTATGGACTCTTCAAATCAGGGGACCCTTGTAACACCATGTGCGCAAAGTAGGGATCAAGATGTGGCTTACTGTTGAAACTCACTGTAGAAAACAAAAATTGTTGACACTGGAAATGTATATTTCTTCATGTGAGTTTGCCTCTTTAAACTGATTTTGACGTATCTAGTCTGTTGCCAAAGCAATGAAATATCTCCCTATGGTTGCGGAAGGATCTCTTTGAAGCACATCCTCAGATTAGAAACTAAATGGCACCAAACCCTTTGTGTTTGTTTTCTGTTGAATAAAGTTGAAAAACATAGGGTCTTAATTTAATCACCTTGTTGCAAGATAGCTTTTTCTGCAATGCAGGAGCTATAaaatgtgtagtgtatttgaggttttaaggcttctgaagtttgcaatttccactttgacatttcagacttaaTTTTCCCTTGTGAAAATGTTTTCATTCCCTATAAAATgttccatgaattataatccacataataatttacatttcctgttgctgcaggattattttcctgctgttgcaaactggctcaaattaagatctgaaATCTGTAAAGTGTGGGAGGCCAACTTTTATTGTTACAAAGACCACAAAGATGATAATATTTAATTGCTAAGCTTTTTGCAATTCTTCTTTAAAAGAAGCTGAATGCCTTGGAATATGTTACAGGGACAAAACAGTGCCTTCATTTTGGAGTTTCTAGTACTGCAAATGTCAACCAAAAGGTCATTTATGTTTATTCTTTACCAGTCTAtgtttaatgtattttttttccaaAACCAAAATTTGTCTTCATGCTTTGTATACGACCTTACTGCAGTCATAATGTATTGCACTGCAATTATGTTTATGGCTTGAGTCAATTAAAAtgtatacataaaaaaaaaa
>XM_036948344.1
CTTTAGTATTGTGGAGTTTTTGTTATTGCATGCTTTCAATTGTATGCTAACATGGGTAACTTTTTTCTCATTAGACTGGTTCATATGCTCCAGCTACATAATGCAGTATTGGATCCAATTACGCAGCCCAACATTCATCTGAATCAGGAGACAATCATTAGACCAGAGCAAACTAAAGAAAATGTTAGCTGACTGAATCCATATGTGAGAAAAGGGTAGAGGCATGATGCACTCCAAACAGAGGATTGTCGACAACATTCCAGGTAAACGCTGCAGATGCCAActcaattggaaattacctttGAATGTCAAGCGAGCTGTAATCCGGTTATGGATTGAACCCAGCCAAAATTGTGTCATGTCAAATTAACAATTAGAAAAGATCAACAGCACAATATGACTGTGACAACATCTGTAGGCGCCATACTAGAGGGTAGAACATAGAGATAAACACATGTATCAATCTCTATGGGGTAAACACATTTAATGACTCTCCAAGGATTCAAGGCTGTTGGAGAGACGTGCTGAGAATATGGGACAGGAAGAAGATTGAGCAAACAAGTCAATCCTGCTTTTCATGTGTTTTGGGTGTGTTGTCTTACAGTCAAGTCATAGACATTACAGCTACACAGAGTGGTCAAAGTAGCATATACTGCATTTCCTTTGAGTAGGTTACTCAGTTACTCAGCACAGTGACAACTTGTTTCATCATCAGCCTTTCAGGTCAGTGCAAAAGGAAACCTGTACTGGAAACTAGGAGCAGTGACACTGTTAGTAGTGTCACAGTCTCAGGTTACAGTCTCCTAAAAAAAACTATCTGGAGTAGTCAGAACTGCCCTCTGACATTCTGTTATAAATACACAGCTTCTTATGACTGGTGTGTAGTAGAGTACTTGGCagctgcctccctctccctctctctctctctctcttgctctccctgtttctctcacgCTACAGCCAACGTTTTCTGTTTAGGGGGGGCAGAGCCAAGGTCATATTTTctaggggtggaggagagggggagggtacGTAGTTGACCCCTCCCCCTTCTGCTACTGCAACTTTCTCTAGTGCTCTAGGGGCTGCAGGGAGGCAGAGCTGCAGAGCACATGGCGAAATTATTTTTCGAACGAGGCTCCTTTAAATCCGGGGATTACGGTGTCATAGACAAGAGGAGCCGGTGTACTTCCTGTTCTGTCAATTGAATGGGATACACAGAATTCGTGAGTGTGTATGTAATAGCGATAACGAGGGGGGAGGGAATATGAACTGAATGTACACACTTGCCGGATAATGTAATAATACTCTGATCACAGTGGAGTGAGAAGTTACCcaagagagaaggagatataATAGGCAGTCCCACTCCATCACAAGGATGGATTCAAACTGaagaaaaaccaggaagaggAACTGAGTTACTGTCCTTTATGCAAGTTGTTTactggctgtgcccctgcccttCACCATGACTCTCCTAACCCACGTGCTGGCATGTCTCTTTGGCATGGGCTCCTGGGTGGCCATCAACGGGATGTGGGTGGAGCTGCCCCTCATAGTGCCCGAAATCCCAGAGGGTTGGTACCTGCCCTCTTACCTCACTGTGCTCATCCAGATGGCCAACGTGGGGCCCCTTTTCGTCACCCTCATGCACCGCTTCCGCCCGGGCAAGCTGGACGAGCGGCCCGTCATCTACTCCATAGTGGGCCTGGGCGTGGTCGCCACCTTCCTCCTGGCCTTCTTCTGGAAGCACACGGTGTCCCTAGCGGGCGCTACGCATAGTGTCCCCCTCCTAGTGCTCTGTTTCCTACTCTCTGTGGTGGACTGCACCTCCTCGGTCACCTTCCTTCCCTTCATGATGCGCCTCGGGCCCCAGTACCTCACTACGTACTTTGTAGGGGAGGGCGTTAGTGGCTTGGTGCCTGCCATAGTGGCTCTGGTGCAGGGGGTGGGGGTGGTTCACTGTCGGAATGCTACAGTGGCTAGCTTAGCCAATGGGACCTTAGGGATTAACTCCACGGTAGGGGCCAGTGGAGAGCTCCAGGCTCAATACCAGCCCGCTAACTTCTCTGCCCaggtcttcttcctcttcctcagtgCCATGATGGTGGTGTGTCTGGCCGCCTTCCTCTTGCTCAACCACCACCCGGCCGTGGCCAGGGAGAGGAAGCGCGAGCACTACTTCAACAGAGGCCTGGCAGAGGAGAAGAGTGACCAAGCCCTGTCCCTGTCTCACAGACCTCAAGAGGAGAAGCCCATGATCAGTTCTCCGGATGGCCACCGGAGAGCCCGGCAGAGCTCCTTTGGGACGGGCTTCTACAGTGGGCCGGAGGTGACGTTCATCTTTGTGGTTCTGGCCTGGGTCAATGCCCTGACCAACGCAGTGCTGCCCTCAGTGCAGTCTTACTCCTGTCTGCCTTACGGGAACCAGGCCTACCATCTGGCGGCCACCATGGCAGCCGTGGCCAACCCCGTGGCCTGCTTCATCGCCATGTTCCTGCCCTTAAGGTCGTTGGTGCTGATTGGGCTTCTGACAATAGTTGGGACAGGGTTTGGTACTTACATCATGGCCATGGCTGCACTGAGCCCCTGTCCTCTACTGGTTCACAGCGTCTCAGGCACCGCACTCATAGTGATCGCCTGGATGTTGTTTGTCCTGACCCTCTCCTATGTGAAGGTGATCATTGGGGTGATCCTTCGGGATGAGGGCCACAGTGCCCTCGTGTGGTGTGGAGCAGTAGTACAGCTTGGCTCCATGCTGGGTGCCCTGTCCATGTTTCCCTTGGTCAGTGTCTATGGACTCTTCAAATCAGGGGACCCTTGTAACACCATGTGCGCAAAGTAGGGATCAAGATGTGGCTTACTGTTGAAACTCACTGTAGAAAACAAAAATTGTTGACACTGGAAATGTATATTTCTTCATGTGAGTTTGCCTCTTTAAACTGATTTTGACGTATCTAGTCTGTTGCCAAAGCAATGAAATATCTCCCTATGGTTGCGGAAGGATCTCTTTGAAGCACATCCTCAGATTAGAAACTAAATGGCACCAAACCCTTTGTGTTTGTTTTCTGTTGAATAAAGTTGAAAAACATAGGGTCTTAATTTAATCACCTTGTTGCAAGATAGCTTTTTCTGCAATGCAGGAGCTATAaaatgtgtagtgtatttgaggttttaaggcttctgaagtttgcaatttccactttgacatttcagacttaaTTTTCCCTTGTGAAAATGTTTTCATTCCCTATAAAATgttccatgaattataatccacataataatttacatttcctgttgctgcaggattattttcctgctgttgcaaactggctcaaattaagatctgaaATCTGTAAAGTGTGGGAGGCCAACTTTTATTGTTACAAAGACCACAAAGATGATAATATTTAATTGCTAAGCTTTTTGCAATTCTTCTTTAAAAGAAGCTGAATGCCTTGGAATATGTTACAGGGACAAAACAGTGCCTTCATTTTGGAGTTTCTAGTACTGCAAATGTCAACCAAAAGGTCATTTATGTTTATTCTTTACCAGTCTAtgtttaatgtattttttttccaaAACCAAAATTTGTCTTCATGCTTTGTATACGACCTTACTGCAGTCATAATGTATTGCACTGCAATTATGTTTATGGCTTGAGTCAATTAAAAtgtatacataaaaaaaaaa
>XM_021562497.2
CACTGTTATTtaacagacagacacatcagCAACCTGCACAAGGTTGCTCCAGAGCGTAGCGTATCATCACGGCAGCCTCACACAAACATACTCTGTCAGAGGACCATCACATTGTGCTGTGGGACTCAAAACACCGGCAGCCAATATCCATCAACTGCATCTAACTCTGTCTGACTGAGAGGAAGCTTACAGAGTCAGGTCCTTTATGCAAGTTGTTTactggctgtgcccctgcccttCACCATGACTCTCCTAACCCACGTGCTGGCATGTCTCTTTGGCATGGGCTCCTGGGTGGCCATCAACGGGATGTGGGTGGAGCTGCCCCTCATAGTGCCCGAAATCCCAGAGGGTTGGTACCTGCCCTCTTACCTCACTGTGCTCATCCAGATGGCCAACGTGGGGCCCCTTTTCGTCACCCTCATGCACCGCTTCCGCCCGGGCAAGCTGGACGAGCGGCCCGTCATCTACTCCATAGTGGGCCTGGGCGTGGTCGCCACCTTCCTCCTGGCCTTCTTCTGGAAGCACACGGTGTCCCTAGCGGGCGCTACGCATAGTGTCCCCCTCCTAGTGCTCTGTTTCCTACTCTCTGTGGTGGACTGCACCTCCTCGGTCACCTTCCTTCCCTTCATGATGCGCCTCGGGCCCCAGTACCTCACTACGTACTTTGTAGGGGAGGGCGTTAGTGGCTTGGTGCCTGCCATAGTGGCTCTGGTGCAGGGGGTGGGGGTGGTTCACTGTCGGAATGCTACAGTGGCTAGCTTAGCCAATGGGACCTTAGGGATTAACTCCACGGTAGGGGCCAGTGGAGAGCTCCAGGCTCAATACCAGCCCGCTAACTTCTCTGCCCaggtcttcttcctcttcctcagtgCCATGATGGTGGTGTGTCTGGCCGCCTTCCTCTTGCTCAACCACCACCCGGCCGTGGCCAGGGAGAGGAAGCGCGAGCACTACTTCAACAGAGGCCTGGCAGAGGAGAAGAGTGACCAAGCCCTGTCCCTGTCTCACAGACCTCAAGAGGAGAAGCCCATGATCAGTTCTCCGGATGGCCACCGGAGAGCCCGGCAGAGCTCCTTTGGGACGGGCTTCTACAGTGGGCCGGAGGTGACGTTCATCTTTGTGGTTCTGGCCTGGGTCAATGCCCTGACCAACGCAGTGCTGCCCTCAGTGCAGTCTTACTCCTGTCTGCCTTACGGGAACCAGGCCTACCATCTGGCGGCCACCATGGCAGCCGTGGCCAACCCCGTGGCCTGCTTCATCGCCATGTTCCTGCCCTTAAGGTCGTTGGTGCTGATTGGGCTTCTGACAATAGTTGGGACAGGGTTTGGTACTTACATCATGGCCATGGCTGCACTGAGCCCCTGTCCTCTACTGGTTCACAGCGTCTCAGGCACCGCACTCATAGTGATCGCCTGGATGTTGTTTGTCCTGACCCTCTCCTATGTGAAGGTGATCATTGGGGTGATCCTTCGGGATGAGGGCCACAGTGCCCTCGTGTGGTGTGGAGCAGTAGTACAGCTTGGCTCCATGCTGGGTGCCCTGTCCATGTTTCCCTTGGTCAGTGTCTATGGACTCTTCAAATCAGGGGACCCTTGTAACACCATGTGCGCAAAGTAGGGATCAAGATGTGGCTTACTGTTGAAACTCACTGTAGAAAACAAAAATTGTTGACACTGGAAATGTATATTTCTTCATGTGAGTTTGCCTCTTTAAACTGATTTTGACGTATCTAGTCTGTTGCCAAAGCAATGAAATATCTCCCTATGGTTGCGGAAGGATCTCTTTGAAGCACATCCTCAGATTAGAAACTAAATGGCACCAAACCCTTTGTGTTTGTTTTCTGTTGAATAAAGTTGAAAAACATAGGGTCTTAATTTAATCACCTTGTTGCAAGATAGCTTTTTCTGCAATGCAGGAGCTATAaaatgtgtagtgtatttgaggttttaaggcttctgaagtttgcaatttccactttgacatttcagacttaaTTTTCCCTTGTGAAAATGTTTTCATTCCCTATAAAATgttccatgaattataatccacataataatttacatttcctgttgctgcaggattattttcctgctgttgcaaactggctcaaattaagatctgaaATCTGTAAAGTGTGGGAGGCCAACTTTTATTGTTACAAAGACCACAAAGATGATAATATTTAATTGCTAAGCTTTTTGCAATTCTTCTTTAAAAGAAGCTGAATGCCTTGGAATATGTTACAGGGACAAAACAGTGCCTTCATTTTGGAGTTTCTAGTACTGCAAATGTCAACCAAAAGGTCATTTATGTTTATTCTTTACCAGTCTAtgtttaatgtattttttttccaaAACCAAAATTTGTCTTCATGCTTTGTATACGACCTTACTGCAGTCATAATGTATTGCACTGCAATTATGTTTATGGCTTGAGTCAATTAAAAtgtatacataaaaaaaaaa

Function

NR:

description
riboflavin transporter 2-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14620 SLC52A3, RFT2; riboflavin transporter 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562506.2 False 3580 mRNA 0.47 4 40854215 40859593
XM_036948344.1 False 3699 mRNA 0.47 5 40854215 40859666
XM_021562497.2 True 2471 mRNA 0.49 4 40854215 40861194

Neighbor

gene id symbol gene type direction distance location
LOC110489653 LOC106605072 coding downstream 555882 40224622 ~ 40298333 (-)
LOC110489634 LOC106605073 coding downstream 775216 40003770 ~ 40078999 (-)
LOC110489623 zadh2 coding downstream 1032370 39814123 ~ 39821845 (-)
nr0b2a LOC106605079 coding downstream 1298782 39553803 ~ 39555433 (-)
LOC118940039 NA coding downstream 1352727 39499737 ~ 39501488 (-)
LOC110489774 LOC106583729 coding upstream 6695 40867889 ~ 40907134 (-)
LOC110489723 NA coding upstream 67022 40928216 ~ 41111980 (-)
LOC110489798 LOC106583742 coding upstream 295814 41157008 ~ 41237519 (-)
LOC110489806 if36 coding upstream 378698 41239892 ~ 41285762 (-)
LOC110489824 LOC106605057 coding upstream 575433 41436627 ~ 41439816 (-)
G142913 NA non-coding downstream 6455 40845962 ~ 40847760 (-)
G142912 NA non-coding downstream 8471 40845540 ~ 40845744 (-)
G142909 NA non-coding downstream 12393 40841600 ~ 40841822 (-)
G142907 NA non-coding downstream 15517 40838399 ~ 40838698 (-)
G142903 NA non-coding downstream 22156 40831828 ~ 40832059 (-)
G142942 NA non-coding upstream 60332 40921526 ~ 40921746 (-)
G142944 NA non-coding upstream 91853 40953047 ~ 40953318 (-)
G142948 NA non-coding upstream 102072 40963266 ~ 41022443 (-)
G142992 LOC107712493 non-coding upstream 174383 41035577 ~ 41036199 (-)
G143030 NA non-coding upstream 229590 41090784 ~ 41091054 (-)
G141363 LOC106605077 other downstream 1088742 39763933 ~ 39765473 (-)
G140879 NA other downstream 1789797 39063862 ~ 39064418 (-)
G140479 NA other downstream 2026020 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 2805549 38046700 ~ 38048666 (-)
G142918 NA other upstream 2020 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 853352 41714269 ~ 41730507 (-)
G145010 NA other upstream 1845624 42706818 ~ 42707279 (-)
G145767 NA other upstream 2409523 43270717 ~ 43272516 (-)
LOC110490183 LOC106605015 other upstream 2511646 43372725 ~ 43392160 (-)

Expression


Co-expression Network