LOC110489783 (LOC106605064)


Basic Information

Item Value
gene id LOC110489783
gene name LOC106605064
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40881174 ~ 40885140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562694.2
TGTTTCTTGGTAACTTGTGGGTGAGGTCCATTTCAACCAATGAGGAAAGAATAGCACAGACGATCCCTGTGTGTGAAAAAGAATGGCTGCCAGTTTGTCTCTCTTGGAGGAGCACCTCTCTTGTCCCGTTTGCGGTGACATCTTCAGGAACCCGGTGGTCCTCAAATGCAGCCACAGCTTCTGTGAGGAGTGTCTGCAGAAATACTGGAAGGAAATGGAGAATCCGCTGTGTCCCGTATGCAAAAAAGAGTGTTCATCTGAGGAGCAGAGTTTAAGCCTCGCCTTAAAGAGTCTGTGTGATTCCTTACAGAACGGGGGTGAAAACATCAGATCTGATAACAACTGCCAGCTGCATGGGGAGAAACTTAAAATCTTCTGTTTCGACGATAAACAGCTCATCTGTGTTGTCTGCTACACGTCAAAAAAACATAAAGGTCATGACTGTTATCCCGTTGAGGAGGCTGTGCCGGATTTGAAGAGTGAAATCCAGGCAGTCGTTTCCACTTTGAAGAACAAACTAGAAAACAAGAACACAGCCAAGATGTGTCATCAAAGCTGGGTGGAGCACATAAAGGGCCAGGCCCAATTTGCAGAGGAGCAGATCAGCAGGGAGTTTCAGAAACTCCACCAGTTCCTAGACGAGGAAGAGACGGCCAGGATCGCTACCCTGAGAGAGGAAGAACGGCAGAAATCTGAAGTGATGCAAGAAAAAGCTGAGACATTGGCCAGAGAGCTCACAACCCTTTCAGAGACGATTGTAGTACTAGATAAGGAAATGGAAGTTGACAATATCACATTCCTGCAGAACTACAAGGCCATACTTAAAAGAGCCAATTGCACATTCCCAGATACTGAAGATACTCAGGTAGTGTCAGGAGCACTGATTGACGTGGCCAAACATGTGGGATCTCTCAAGTTCAAAGTCTGGGAGAAGATGCATGAGTTTGTTGACTACACTCCTGTGACCATGGATCCAAACACAATGTCCACTAAGTTCACACTCTCTGATGACCTCACCACTATGACATACTGTGACGAGAGGCAGAGTCTCCCAGACAATCCCGAAAGGTTTCTTAACGTAGGAGTGTTGGGTTCTGAAGGGTACAGTAAAGGCATCCATTACTGGGATGTGGAGGTTGGAGATAATGATAACTGGATCTTAGGAGTAGCCAAAGAGTCCATTCCACGCAAGAAGCAAGTCAAAATGGAGCCTCAGAGTGGATTGTGGATCATCAAACACATCAGTGGCAAATACAAAGCATGTATAAAATCGCATGTTCAGATCAAAGTAGATGAGAGCCCACAAGTGATCCGAGTTCGACTGGACTGTGACAAAGGGGAGGTGACATTCTGCGACATCACCAAGAACACGACACTCTACACCTTCAAAGACAAATTCACTGAAAAGGTGTTCCCGTACTTTAATAGTGGAAGTAAGATTTGCCCACTGCGCCTTTTTGTAGCGGGAAAGGCGAAAACTAGCTAATTGCCAGGGTCAAGTGAGGACAAACATATGCAATTATGTAATGACTTTATGTACTGACATTAGCTGGAAGGTTGTGAAAATTGTTTGACTAAAACTCCATGTAATTAAGACtttcctttatttttatttatttgttattttaccaggtaagttgactgagaacacattctcatttacagcaacgacctggggaatagttacaggggagaggagggggatgaatgagccaattgtaaactggggattatcagttgaccgtgatggtttgagggccagattgggaatttagccaggacaccggggtttccacccctactcttacgataagtgccatgggatctttaaatgacctcagagagtcagcacacccgtttaacgttccatccgaaagacggcaccctacacagggtagtgtaatcactgccctggggcattgggatagtttttagaccagaggaaagaagAAGACACTGCCATCTCAGAAGTAATGAACAAGTGTTTTAAGCAGttgatacagtatataaaaaatgtaatgtcAGTAATCAAAATAAATGATATGTACGTTTCAATTGCACCTTCCTAGTCATTCAATAACACTTGCATTTACACATTCACATAAAAAGTTTGACTGTACTGTCGTTAAAGACATCAACCACTAGATGGGGATATCCAGCTATATAGACATCCCTATTGCTCAATGCCACACTGTAAAATGTGCGTACAGTCAGAGTAGGTTCCTCTGAGCTGAGACAAaaccttgaaaaaaaaaaatcatacaatgacaaTACATATTAGGTTTCAATGAGATCCAGGTGGATGGGTAAAGGGCTCTCACCCTATAGTACTATGAATCTCTGAACTTGGATTTCAGTTTTTGATCAGGGCACAGGACCGTTTGTGGGCAGCTACTAAATGGGTCcagtggcgacccatcattcagggcagttgagttttttttttgttttgttgcctgtttgcatgttattttggcattaatacagtatgtgtcatcagtttgcaaacaatgtaaattaAAAATGTCATACATTGAGTCagtaaa

Function

NR:

description
tripartite motif-containing protein 35-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562694.2 True 2546 mRNA 0.43 6 40881174 40885140

Neighbor

gene id symbol gene type direction distance location
LOC110489695 LOC106605067 coding upstream 33415 40781026 ~ 40847759 (+)
LOC110489685 LOC106605069 coding upstream 227792 40636099 ~ 40653382 (+)
galr1a LOC106605071 coding upstream 561911 40309178 ~ 40319263 (+)
LOC110489640 LOC106583530 coding upstream 655842 40115958 ~ 40292372 (+)
LOC110489609 LOC106605074 coding upstream 1018654 39821880 ~ 39862520 (+)
LOC110489815 LOC106605058 coding downstream 409541 41294681 ~ 41355200 (+)
LOC110489825 LOC106605056 coding downstream 569119 41454259 ~ 41460908 (+)
LOC110489834 eny2 coding downstream 654100 41539240 ~ 41541654 (+)
LOC110489853 sybu coding downstream 809297 41694437 ~ 41710790 (+)
LOC110489869 LOC106605052 coding downstream 845545 41730685 ~ 41741910 (+)
G142660 NA non-coding upstream 77583 40803375 ~ 40803591 (+)
G142643 NA non-coding upstream 103767 40777198 ~ 40777407 (+)
G142612 NA non-coding upstream 127423 40753492 ~ 40753751 (+)
G142372 NA non-coding upstream 295648 40584675 ~ 40585526 (+)
G142733 NA non-coding downstream 39172 40924312 ~ 40924529 (+)
G142735 NA non-coding downstream 41188 40926328 ~ 40926634 (+)
G142707 NA non-coding downstream 43079 40928219 ~ 40928482 (+)
G142706 NA non-coding downstream 52212 40937352 ~ 40940688 (+)
G142737 NA non-coding downstream 56038 40941178 ~ 40941802 (+)
G139179 NA other upstream 2829430 38051359 ~ 38051744 (+)
G139101 NA other upstream 2937162 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 2940460 37919735 ~ 37940714 (+)
G139004 NA other upstream 3057164 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 4479203 36354883 ~ 36405310 (+)
G143938 LOC106605049 other downstream 1083234 41968374 ~ 41969317 (+)
G144661 NA other downstream 1625190 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 2845732 43730872 ~ 43731218 (+)
G146091 NA other downstream 2883567 43768707 ~ 43769162 (+)

Expression


Co-expression Network