LOC110489798 (LOC106583742)


Basic Information

Item Value
gene id LOC110489798
gene name LOC106583742
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41157008 ~ 41237519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562721.2
CAAACTAGGGGTGATGATAGCTTACAACAATACCCCACTCAAACGTCACGTGTTGTGCCTCATTTCACACGAGAATCAAAACGGCTGCGTTTATTTATTTCCTGCACTAGGACCCTGAGGGAGCCTCGGTGTTGTGTGAGAGGACCTAGGCAGCTAAATAGCATGTGTCATCTTCATTATCTAAAATAATAAGAAAAAATACTTCACTCTGGTCAAGGGGCTTCTAATTCTGAGCAGCCCCACAGATCTAGAGATCTCCACGTGACAGGAGCAGCTATATGAGAAAGCAACCCAAGCATCAGGACCAGTAGTAACCTACCACTTCACCTCGGCTCGAAGCGCAGATGCAGACAATCTAGAGGAGAATCTACTGGGTTTATATCCTTTGCTTTAAACCCCAAGGTAAAACGAGACGTCTGAATGGTGTAGACAAGTTTGTTGAAGTGAAGAAGGACACGCTTTCACCGGGGAAGCAGGTATTATCGGAATAAAACTCGCGTGCATCTCAGGGAGATCACTCGGACCTCTGTTCTCTTCAGAATAACTTTTCATACAAGAGGTGATGCTGTATGCTCCAAATCCACTGTGGCTTTCTGAAGTGGATTTAGACTGTCACATATGCAGCACTCAAAGGGACACTTGTGAATGAAGGGTGAACTTCATAAACTTCATAAAATGATATTATTCAGTGGTGAGATATTATGTTGTCGCTGCTCGTTTAATGTGTGACAAATTGGAATCATTCAAGAAACTGGAGGACACGAACCAGATAATTCATCCCAACACCACTGGCACTTCTTATTCGAGTCGGAACACCAGCCGTCCAGATGCAGTTTCGACTTTTCTCATTGGCTTTAATCGTGTTGCACTGTATGGAGTACAGCAACTGTCAAACGCAGTCAAATCGCTGGAGGAGGAACAAAAGAGCTAGCTATGGAGTGTACCCCATCTGCAAGGGCTGCTCGGTGTGCTCCAAGGACAATGGCTGCGTGAACTGCCAGCCCAAGCTCTTCCTGTTCCTgcggagggagaggatgagacagTACGGCGAGTGTCTCCACGCATGTCCGACGGGATACTTTGGCATTCGAGCTCCTGAGATCAACACGTGCTCCCGGTGCAGGATAGATAACTGTGAGTCCTGCTTCAGTAAAGACTTCTGCACGAAGTGCAAGGCAGGGTTTTACCTGCACAAAGGGCGCTGCTCTGAGAAGTGCCCCGAGGGCTTTGCGCCCCTGGAGGACACCAAGGAGTGTGGAGAGGGCTGCGAGGTGGGCCAGTGGAGCGAGTGGGGGTCCTGCACCAGGAGAAACAAAACCTGCGGCTTCAAGTGGGGTCTGGAGACGCGGACGCGGCACATCGTGAAGAAGCCTCCCAAGGACACGATACCCTGTCCCACCATCGCCGAGTCCAAGAGATGCAAAATGGCCATTAGGCACTGCAGGAGAGGAGGATCAGGGAAGCAGCGACCCAAAGAACCAAAGAAGTCCAACAAGCAGAGGCTCCGGTTCCAGGCCCAGAATCAGCATAGTGACCACCTGGCCTCCATGAGCtccagccagtagaggactgagTCCCCCCCACACACCCCACCCCTTGGAACCTAAACAACACAAAGCTGCTAGCTGCTGCTCCACaaacctccaccccacccccccaccccagcaCACAGTCACACTACACCATATTAATGACCCTACACATGTCTATGGTTGTAGTAAAGTACACATAtgccctctgtccctgtctctctctgtcttctgctGCTTCCCTCGTACCGCAGAGTACCGCATCGTAGTGTGCCGCTGACAGATCAGCCAATCAGCTCCCCCCTTTTGACCCCACTGTGACATCATAGAACTCCTAGAAACACTCGTTCCTTTTGCTCACACGCCATGTACGTCTGGGGAGAACAAACCAACGAGGGGAAACCGACACACACCGACTGACAGACGGAGGACGCGAAAGAGCAGGAGAATGAGGAATGAGATGGATGTTGATAATAGTGGTGACGGTCCAGCTATGGGGGCAATGGAAGACGCCAAGACGACGACTCTGACGGAGAGAGGAAGAACGTgcgaagagagagaatgagaggatgatcaagagaagaggagagatttGGCAGAAGCAACAAGGGTGACGGCTATTAAGTGACATCTTGAAATAATTGAGACTCTTCTGTATTTATTTCAAAGCAAACTCTTATTTTCCCTCATTGGAGGCGGAGTGTTCCATGTATGGCCTTTTTGTTCATTGTGTACATTTTTTGAGAGTCATGTTAAGAAATACCATGCGTAGTTGCAATGTATTTTATTCTCAGCACAAAATGTTTACGTCCAGAACCCGCTTTAATGCTCTAACTGTATGCTGTGGATAAAGACATGTTAGTTGTTCAAACTTAGCATGGCAACAAACTCATGTGTACATAGTTGATGAGTTCATCTAATTATAAAACCTATTACTGTATTTTCGGTATTGACTCCTCCCAGCGTTCTAAATGTTTCAGAGAAAAGGATGTAATACCAAGCTACAGATTCAAAAAAGACTGAAAACGAAATAATAAACATAGCCAACACATAGCTATTACATTTATATGgtatatatttgatttatttattgattCTATTTTGTACTTTTGTGTTCGGTGACAATTTTGTCTCGTACTGTTACTCCTCTGTGCTGAAATATGATTTGAATCCCACAATACAGATATCTTTAAAAGAG
>XM_036948433.1
CCAAACTAGGGGTGATGATAGCTTACAACAATACCCCACTCAAACGTCACGTGTTGTGCCTCATTTCACACGAGAATCAAAACGGCTGCGTTTATTTATTTCCTGCACTAGGACCCTGAGGGAGCCTCGGTGTTGTGTGAGAGGACCTAGGCAGCTAAATAGCATGTGTCATCTTCATTATCTAAAATAATAAGAAAAAATACTTCACTCTGGTCAAGGGGCTTCTAATTCTGAGCAGCCCCACAGATCTAGAGATCTCCACGTGACAGGAGCAGCTATATGAGAAAGCAACCCAAGCATCAGGACCAGTAGTAACCTACCACTTCACCTCGGCTCGAAGCGCAGATGCAGACAATCTAGAGGAGAATCTACTGGGTTTATATCCTTTGCTTTAAACCCCAAGGTAAAACGAGACGTCTGAATGGTGTAGACAAGTTTGTTGAAGTGAAGAAGGACACGCTTTCACCGGGGAAGCAGGTATTATCGGAATAAAACTCGCGTGCATCTCAGGGAGATCACTCGGACCTCTGTTCTCTTCAGAATAACTTTTCATACAAGAGGTGATGCTGTATGCTCCAAATCCACTGTGGCTTTCTGAAGTGGATTTAGACTGTCACATATGCAGAAACTGGAGGACACGAACCAGATAATTCATCCCAACACCACTGGCACTTCTTATTCGAGTCGGAACACCAGCCGTCCAGATGCAGTTTCGACTTTTCTCATTGGCTTTAATCGTGTTGCACTGTATGGAGTACAGCAACTGTCAAACGCAGTCAAATCGCTGGAGGAGGAACAAAAGAGCTAGCTATGGAGTGTACCCCATCTGCAAGGGCTGCTCGGTGTGCTCCAAGGACAATGGCTGCGTGAACTGCCAGCCCAAGCTCTTCCTGTTCCTgcggagggagaggatgagacagTACGGCGAGTGTCTCCACGCATGTCCGACGGGATACTTTGGCATTCGAGCTCCTGAGATCAACACGTGCTCCCGGTGCAGGATAGATAACTGTGAGTCCTGCTTCAGTAAAGACTTCTGCACGAAGTGCAAGGCAGGGTTTTACCTGCACAAAGGGCGCTGCTCTGAGAAGTGCCCCGAGGGCTTTGCGCCCCTGGAGGACACCAAGGAGTGTGGAGAGGGCTGCGAGGTGGGCCAGTGGAGCGAGTGGGGGTCCTGCACCAGGAGAAACAAAACCTGCGGCTTCAAGTGGGGTCTGGAGACGCGGACGCGGCACATCGTGAAGAAGCCTCCCAAGGACACGATACCCTGTCCCACCATCGCCGAGTCCAAGAGATGCAAAATGGCCATTAGGCACTGCAGGAGAGGAGGATCAGGGAAGCAGCGACCCAAAGAACCAAAGAAGTCCAACAAGCAGAGGCTCCGGTTCCAGGCCCAGAATCAGCATAGTGACCACCTGGCCTCCATGAGCtccagccagtagaggactgagTCCCCCCCACACACCCCACCCCTTGGAACCTAAACAACACAAAGCTGCTAGCTGCTGCTCCACaaacctccaccccacccccccaccccagcaCACAGTCACACTACACCATATTAATGACCCTACACATGTCTATGGTTGTAGTAAAGTACACATAtgccctctgtccctgtctctctctgtcttctgctGCTTCCCTCGTACCGCAGAGTACCGCATCGTAGTGTGCCGCTGACAGATCAGCCAATCAGCTCCCCCCTTTTGACCCCACTGTGACATCATAGAACTCCTAGAAACACTCGTTCCTTTTGCTCACACGCCATGTACGTCTGGGGAGAACAAACCAACGAGGGGAAACCGACACACACCGACTGACAGACGGAGGACGCGAAAGAGCAGGAGAATGAGGAATGAGATGGATGTTGATAATAGTGGTGACGGTCCAGCTATGGGGGCAATGGAAGACGCCAAGACGACGACTCTGACGGAGAGAGGAAGAACGTgcgaagagagagaatgagaggatgatcaagagaagaggagagatttGGCAGAAGCAACAAGGGTGACGGCTATTAAGTGACATCTTGAAATAATTGAGACTCTTCTGTATTTATTTCAAAGCAAACTCTTATTTTCCCTCATTGGAGGCGGAGTGTTCCATGTATGGCCTTTTTGTTCATTGTGTACATTTTTTGAGAGTCATGTTAAGAAATACCATGCGTAGTTGCAATGTATTTTATTCTCAGCACAAAATGTTTACGTCCAGAACCCGCTTTAATGCTCTAACTGTATGCTGTGGATAAAGACATGTTAGTTGTTCAAACTTAGCATGGCAACAAACTCATGTGTACATAGTTGATGAGTTCATCTAATTATAAAACCTATTACTGTATTTTCGGTATTGACTCCTCCCAGCGTTCTAAATGTTTCAGAGAAAAGGATGTAATACCAAGCTACAGATTCAAAAAAGACTGAAAACGAAATAATAAACATAGCCAACACATAGCTATTACATTTATATGgtatatatttgatttatttattgattCTATTTTGTACTTTTGTGTTCGGTGACAATTTTGTCTCGTACTGTTACTCCTCTGTGCTGAAATATGATTTGAATCCCACAATACAGATATCTTTAAAAGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K23097 RSPO2; R-spondin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562721.2 False 2727 mRNA 0.47 6 41157008 41237518
XM_036948433.1 True 2604 mRNA 0.48 6 41157008 41237519

Neighbor

gene id symbol gene type direction distance location
LOC110489723 NA coding downstream 45028 40928216 ~ 41111980 (-)
LOC110489774 LOC106583729 coding downstream 249874 40867889 ~ 40907134 (-)
LOC110489712 LOC106605066 coding downstream 295814 40854215 ~ 40861194 (-)
LOC110489653 LOC106605072 coding downstream 858675 40224622 ~ 40298333 (-)
LOC110489634 LOC106605073 coding downstream 1078009 40003770 ~ 40078999 (-)
LOC110489806 if36 coding upstream 2373 41239892 ~ 41285762 (-)
LOC110489824 LOC106605057 coding upstream 199108 41436627 ~ 41439816 (-)
LOC110489843 LOC106605054 coding upstream 442113 41679632 ~ 41687533 (-)
LOC110489860 LOC106605053 coding upstream 476750 41714269 ~ 41730507 (-)
LOC110489886 LOC106605049 coding upstream 726203 41963722 ~ 41969950 (-)
G143067 NA non-coding downstream 21656 41130331 ~ 41135352 (-)
G143040 NA non-coding downstream 53051 41103620 ~ 41103957 (-)
G143034 NA non-coding downstream 57846 41098908 ~ 41099162 (-)
G143030 NA non-coding downstream 65954 41090784 ~ 41091054 (-)
G142992 LOC107712493 non-coding downstream 120809 41035577 ~ 41036199 (-)
G143485 LOC106605058 non-coding upstream 57127 41294646 ~ 41361157 (-)
G143537 NA non-coding upstream 141500 41379019 ~ 41379287 (-)
G143545 NA non-coding upstream 154825 41392344 ~ 41392624 (-)
G143551 NA non-coding upstream 162809 41400328 ~ 41400654 (-)
G143735 NA non-coding upstream 429596 41667115 ~ 41667404 (-)
G142918 NA other downstream 293287 40863214 ~ 40863721 (-)
G141363 LOC106605077 other downstream 1391535 39763933 ~ 39765473 (-)
G140879 NA other downstream 2092590 39063862 ~ 39064418 (-)
G140479 NA other downstream 2328813 38827909 ~ 38828195 (-)
G145010 NA other upstream 1469299 42706818 ~ 42707279 (-)
G145767 NA other upstream 2033198 43270717 ~ 43272516 (-)
LOC110490183 LOC106605015 other upstream 2135321 43372725 ~ 43392160 (-)
LOC110490298 LOC106605170 other upstream 2538544 43776063 ~ 43783884 (-)

Expression


Co-expression Network