LOC110489825 (LOC106605056)


Basic Information

Item Value
gene id LOC110489825
gene name LOC106605056
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41454259 ~ 41460908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562771.2
ATGGAGAATGTTACTTCAATTCCAGATAACCAGACGCTTGGTCCATGGACTGATTATAGCATGGAATACAAAGTGGTCAGCATATTTTTTGTGATTCTCATCTGTGGGATAGGAATAGTTGGAAACGTTATGGTGATTCTAGTTGTTCTTACAACCAAACACATGCGGACACCCACCAACTGTTACCTGGTGAGTTTGGCGGTGGCCGACCTGATGGTTCTGACGGCGGCGGGACTGCCGAATATTACACAGAGTTTGTATGGAGGAGGCTGGGTGTACGGATACGTCGGGTGCCTTAGCATAACTTATTTCCAGTACTTGGGCATCAACGCGTCTTCATGCTCTATCACCGCTTTCACTATTGAGCGGTACATAGCCATCTGCCACCCAATAAAAGCGCAGTTTATGTGCACTCTGTCAAGAGCAAAGAAAATCATAGTGGTCGTTTGGGCTTTTACCTCGCTCTACTGCGCCATGTGGTTTTATCTGTCTGACATGAACGAGTTGATTTACGACAATATTACCGTGGTCTCATGCGAATACAAAGTGTCAAGAAATCTTTACCTGCCATTTATCTACTTCACGGACTTTGCCATGTTCTACGTGGTGCCCCTCATGCTAGCCACGGTTCTGTATGGATTTATCGCTAGAATTCTTTTCCTCAACCCATTGCCGGCTGACCCCAAGGAAAACACAAAGTGGAAAAAAGAATCATGCCAAGGAAATAGAATGATGAGCACCAACAATTCATCCTGTAGCACAACCATCCGCTCTCGCAGGCAGGTGACTAAGATGTTAGCTGTGGTGGTGGTGCTCTTTGCCCTCCTCTGGATGCCCTACCGGACGCTGGTGGTGGTAAACTCCTTCCTGGACAAGCCTTACCTGGACCTCTGGTTCCTACTCTTCTGCCGCATCTGCATCTACCTGAACAGCGCCGTCAACCCTGTCATCTACAACGCCATGTCTCAGAAGTTTCGCACCTCCTTCAAGAAGTTGTGTCACTGCGGTCCGCAGCGATTGGAGAAGCCGGCGTCTTACAGCTTGGCCCTGACCTACAGCGCCATCAAGGACACAACCAATGGAGAGAGCCCTGACCACTTCACTACCGAGATGGATGAGCTGGCCACACCCACACCCAGTGACCAGTTCCTGCCCAGCACCAAGAGGATATCATTTGAGGACACCTCTCTGTCAGGCAGGGTTGCCCTTTGCACTGCCTGACGGAAAAAATAACTCCATTCAGGCAACAATGATTACCTGCAAGGATCTTCTTATCCTTAAGCTCTAGTTTGTGAATTCAAAATGGTCTCCAGCAGCATACTTCCAATTCTATTCTATAACTCATTTTCTGTCGAGGAATTGATTTAATATTTGAGCAGTGCAACGGCAAACATTAAATGCCAAAAAATGTGTTGTTAACAGAGGAAGTACTACTTCATTTCTTTATCTATCATGGTGAAAATatattctcccctctctctgtagccATCTTAGCACAAAGCACCCAATTATAGGCATTGTTTAAATCCGTCCTAAACATTGTGTGACACAATGCAAGGTAATAATCATACTGCTTTCACATACTGAGCAACAGTTGCCATCTCTGTAAAGTGTTTTCCTACAAGGGAAATATAACAAGGGAAAGATGTTATCCCTCTTTTTATCTGGAGAGGTGTAGGCCAggaactcagtgtgtgtgtgtgtgtgttcgtgtgtgtgttttaaagatAAGCTCACTCTACAGGAAGAATCAAACTGTCTGGGCTGTTGTTAAAACCACCCTGCTACCTTCCATGTTTTAAAACAACACAGAGAGAATGTGATCACTGACCACATTTCAAAGGCAGAATTCAAAGGAGGCAGAGTATCAAAACCATCTCTGCTCAAGGGGTGTAAATATCACACATTGCTTTAAATTGAAACCTGCCTGTCAGAGAAATAGAGATGAGGTGGGATGAAGTTTATTTAAAGGTTACAGATGATGAAAAGGACTGATAACAAAGCAATGACACGCCGGATCTGTCATCCGTATGATTCCTCAATACCATTTGACTTTATAGTAACCTTATTGGCTAAAAGGTTCACCCGATATGAAACGTTCCGCAGGGGCTAGTGTCAAAAATGCAGCATGGTTAAACATCCTGCTGTACCTGTAATGGACTACTGTGGTGTGGATTCAATCAACAAGTGTTGGAGGGTCCAGAGTCCATAGCGAGAAAGATCTTTGATGACTCAGACACCTGGGTGGTTGATGGTTGTCTCTAGGTCAGGGGCCTGACATGACCAGACCAAACATTATGTTGACATCCTCAACAGCAGAGACTGATGGTAGCATTTCCCCATAATGGATCCCCCCAAGCACAACCCGGCGAGATTAGAGGATTCATCAATGCCAAAGTGTTCTACTTTGTAGATTTGAGGGAGGCTGGTGAGTCATGGTACAGCCATAAAGCACGGGCACAGTGTCaaaaaaacagaaagaaaaaGCATAAAAGGAATGAGCATTGATTTAATTTAGAATTCAAATAAGGAAAAAATAGAacgtttgttgttgtttattttatACTGATGAAACGCCCTCTCTGTCCCTTTTAGGATACTGTAAAAATGCTTGCAAATGATTGTGCGTTGCCGTGTGAAATTGATGTACGATGTACATTTTCGATGTACGTTTCAGACCTGTTTTCAATTCATACCTTTGTACCATTTACATTGTGTCTGCCAGTAGAGCTATTTTGTAATAACGTAGTTTGTTTTGTTCAGTTTTATTGTTTGTTCCCATCAATATACAGTATTTTACTATGGAgcgatcaatgtggagctacgcTCTTCTTCTTTGGCAACACTACAACTACAGTAGGTTTCAAAGAAGGTATGTGAAATAATGATCTGTCCCTCTTGCACTTTCATCTACTATCTCCGTTGCACAGTTTCCACCATTAGAGGGAGTGGTGCCTGGTAGCGAGTTTGCAGCATGGACACTGTAAaacaaatgatgttgtggtgtgATTTCAAAAAGAAAGACATCTATGTGCTGTATACAGTTATTCTTCAGTCAGCAATGTTGTGTATCCTGGTCTTTCTTTGCTGGCAGTTCTCTGCATTGTAAAAACTACCCTTGTTGTTGTTTGGatgttttgtgttttgtattttgtattgtcaTTTGTCTATAATAAAATGGTCATTGATCATGTACTCTGTCAAATATTGATAATTACTCTCAGAA

Function

NR:

description
thyrotropin-releasing hormone receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004997 thyrotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04282 TRHR; thyrotropin-releasing hormone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562771.2 True 3226 mRNA 0.43 2 41454259 41460908

Neighbor

gene id symbol gene type direction distance location
LOC110489815 LOC106605058 coding upstream 99059 41294681 ~ 41355200 (+)
LOC110489783 LOC106605064 coding upstream 569119 40881174 ~ 40885140 (+)
LOC110489695 LOC106605067 coding upstream 606500 40781026 ~ 40847759 (+)
LOC110489685 LOC106605069 coding upstream 800877 40636099 ~ 40653382 (+)
galr1a LOC106605071 coding upstream 1134996 40309178 ~ 40319263 (+)
LOC110489834 eny2 coding downstream 78332 41539240 ~ 41541654 (+)
LOC110489853 sybu coding downstream 233529 41694437 ~ 41710790 (+)
LOC110489869 LOC106605052 coding downstream 269777 41730685 ~ 41741910 (+)
LOC110489877 LOC106605051 coding downstream 289131 41750039 ~ 41826833 (+)
LOC110489902 LOC106605050 coding downstream 576592 42037500 ~ 42039843 (+)
G143237 NA non-coding upstream 56622 41397300 ~ 41397637 (+)
G143236 NA non-coding upstream 59152 41394853 ~ 41395107 (+)
G143235 NA non-coding upstream 61614 41392430 ~ 41392645 (+)
G143225 NA non-coding upstream 77572 41376316 ~ 41376687 (+)
G143121 NA non-coding upstream 130041 41238892 ~ 41324218 (+)
G143739 NA non-coding downstream 208884 41669792 ~ 41670307 (+)
G143778 NA non-coding downstream 281465 41742373 ~ 41742549 (+)
G143779 NA non-coding downstream 282611 41743519 ~ 41743788 (+)
G143840 NA non-coding downstream 331805 41792713 ~ 41838218 (+)
G143860 LOC107662719 non-coding downstream 383067 41843975 ~ 41844344 (+)
G139179 NA other upstream 3402515 38051359 ~ 38051744 (+)
G139101 NA other upstream 3510247 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 3513545 37919735 ~ 37940714 (+)
G139004 NA other upstream 3630249 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 5052288 36354883 ~ 36405310 (+)
G143938 LOC106605049 other downstream 507466 41968374 ~ 41969317 (+)
G144661 NA other downstream 1049422 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 2269964 43730872 ~ 43731218 (+)
G146091 NA other downstream 2307799 43768707 ~ 43769162 (+)

Expression


Co-expression Network