LOC110489853 (sybu)


Basic Information

Item Value
gene id LOC110489853
gene name sybu
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41694437 ~ 41710790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562800.2
CAGTCAGACTCGTGATGAACACTGGAGTAACGAGGGACTCGTTGTGGTGTCCGTGATTTAGGCTACACCCGCATCATTTGCAACTGGGGGAATCATCACCAAACATCCAGATCCAAAGGGGAAAACACAGCGTTAAGCACAATGGGACCATTCCAGGAATATGAGGAAAAGAAGTCATCAGGGAAGGAAAGCCCCCGCAGCCGCATCCCACGCTTGATCCTTCATCCTTTCCACCCTAATGGGAAAGGGTCACCCTTGTCCGAATCACCCATTTCAGAGGAGGAGGGTAAGGACTGTGACATCAGCTCGGACAACTCCAAACGGACCATCAGCTTTTGCTCAGATGACACTGGCTGCCCCAGTAGTCAGTCTGTGTCCCCCTCCAAAACCCTGTCAGGGTCAGACAACAGTCCACATGGCTCCCCCACGCCCACTGCAGAGTGCAAGACCAAGGTGAAGAGGGTGAGGTTGATGGCAGAGTGGCACGCACCACCGCCGAGGCACAAGAGGGAGCAGCGATCGTCCACATTGCCCAGAGGTAGCGAAGCAGACTTCAGCTCCTCCAGCAGCACGGGCAGCCTAAAGAGAGGGGAGAGCCTGGCCCACAACGCCACAGGGAAGAAGATCTCCTCACGCAGTCGTGGTGCCCACATCAGGAGCCTCCCGATGTTCAAGCTGGCAGGGAGCCCGTCAGCATCCCATGATGCAGAGCTCTATGCCCCATACAGGACAGTCCCCTCATCcaccaacagcagcagcaactcCAGCCCCAAAATACCCTCCAGGATGCCCCCCGGACGTTACcactcctgtggggacagccATGGGCTCAGACCCCCCAATCCAGAGCAGTATCTCACCCCCCTGCAGCAGAAGGAGGTGGCCATTCGCCACCTGAGAAGCAAGCTGAGGGAAGCGGAGAACATCGTCCATGACAGGGAGTCCGAGATCGAGGAGCTCAAGTCCCAGCTGGGCAGGATGAGGGAGGACTGGATCGAGGAGGAGTGCCACCGTGTAGAGGCGCAGCTGGCCCTGAAGGAGGCACGCAAGGAGATCAAGCAGCTCCGGCAGGTTGTGGAGACCATGAAGAGCAGTCTGATGGAGAAGGACAAGGGCATCCAGAAGTACTTTGTCGACATCAACATCCAGAACCGCAAGCTGGAGTGCCTGCTGCACAGCATGGAGATGGCCCAGAGTGGCTCCACGCTGCAAGACGAGCCAACCATGGACTTCATCTGTGGTGACTCCCCTGTCAATGATAAGCAGGGGGAGGTGGGTGACCAGGCGGTGGAGGAGATGGCAGACTGTGGGCTGCTGGTCAACGACAACCTGGCACACATGCTCATGTCCACAGAAGTGGACTCTAGCGGTAAGCTACGCTGCCACCCAGAGGCTGGTCCTGGGGTGTCCACTCTACTCCACAgtctggaggaggagaagatcGCACCACTGCCTCCACCACCCTCCAACACGTTCTGTTGCAGCACACTCCCCTTCCCTGCTCCAGAGGAGAAGGCCGTTCAGACCGAGATGGTATCCTTCCCTCCTGACCTGCACACCCTCCTGCTGCAGCTGCTGAAGTTCCATGGTGGTGCAGTTGGAGATGCTCTCCTTCCAGCTTCTACCAGCCTCCTAGAAATCCCAGCACAGCAGGGCCCAGACTTGGCCCCTATCCCGTCCACCTTAAGCCTGCCTAGCTCCTGCCAGCCCATTCCAGTTCTGCCAGTGAGCCCTTATATGTTAAGTAATTCAGGGTTGTGTTGCTCAGACCCTGAGGTGGTCTCCATGCGCTTCATGGAGGAGCTGGATTTTGAGGTGAGCAGTGAGGAGCCCTGCAAGGCCCTCGGGGTGGCTGTGGTCAACAAAAGCTATTGGAGCAGCAGCTTCCTTGTTGATCTTGTTGCTGTGGCCGTACCAGTGTTGCCCACAGTGGCCTGGCTGTATTCCCGGCATGGCGTGGATGGGGCGGCGCCAGTCTACAACATCGCAGCATTGATCCGGGGCTGTTGCATCATGGGATTGCACTCTCTCCGTCATGTCACTCATCATGGGGCAGATGTGTAACGGTCTACGACCCCTGCGTGCACAGCCCGTCCCCTCCAATTAAAGCACTTCAACATTCGTTAATCAAAGAGTATTTGAATATTTAGTTTTTCTACACTTGTGAATATTAATGCTACAGTTATTACTTTAGGTTCCCACGTGGTTACTTTGCACTGTGTACAGTTGTTGCGGTGAGTTAAGTCTTTGTTTATGGTGAAAGGATtttgttaattgtatttatttttcctctgttctcttGTGTATAATCTGAGTAGGTGGTTATGCATCATTGATGTCCTGGGCTGGCACTAGTTACCCCTACTTAAAGCAGCCATGTTTTTTTTCTGAAAGTATTAGGATTTCTGAGGGTGGGGATGAAATAGAATGTTCGTTTGAACGAGTGTTTGTAGTGGTTTATGTTCCAAAATAATCTTAAACCTGCAGCCAAAGCTTTATTAATGAACGTTCACTCTTTATTTTTCTACCTGGGAGTAGAGCGTACATGTGTAACAAATTGATAGGTGTCAGACCAACGCTTCAAGACAACTCATACTTGTTTGTGCCTGAGCTACTGTGTGTAATACTCATAACATCAAATGTCCTAATATATTTACTATTAAAGCATGATAATCCCA
>XM_036948527.1
TTGTTCGTAAATGGTGCAGTGCCAGTGTGCCACATCAGGATGCCTTGGACAGAAATACATCTCACCGTTACTTTTCTCACAGATCCAAAGGGGAAAACACAGCGTTAAGCACAATGGGACCATTCCAGGAATATGAGGAAAAGAAGTCATCAGGGAAGGAAAGCCCCCGCAGCCGCATCCCACGCTTGATCCTTCATCCTTTCCACCCTAATGGGAAAGGGTCACCCTTGTCCGAATCACCCATTTCAGAGGAGGAGGGTAAGGACTGTGACATCAGCTCGGACAACTCCAAACGGACCATCAGCTTTTGCTCAGATGACACTGGCTGCCCCAGTAGTCAGTCTGTGTCCCCCTCCAAAACCCTGTCAGGGTCAGACAACAGTCCACATGGCTCCCCCACGCCCACTGCAGAGTGCAAGACCAAGGTGAAGAGGGTGAGGTTGATGGCAGAGTGGCACGCACCACCGCCGAGGCACAAGAGGGAGCAGCGATCGTCCACATTGCCCAGAGGTAGCGAAGCAGACTTCAGCTCCTCCAGCAGCACGGGCAGCCTAAAGAGAGGGGAGAGCCTGGCCCACAACGCCACAGGGAAGAAGATCTCCTCACGCAGTCGTGGTGCCCACATCAGGAGCCTCCCGATGTTCAAGCTGGCAGGGAGCCCGTCAGCATCCCATGATGCAGAGCTCTATGCCCCATACAGGACAGTCCCCTCATCcaccaacagcagcagcaactcCAGCCCCAAAATACCCTCCAGGATGCCCCCCGGACGTTACcactcctgtggggacagccATGGGCTCAGACCCCCCAATCCAGAGCAGTATCTCACCCCCCTGCAGCAGAAGGAGGTGGCCATTCGCCACCTGAGAAGCAAGCTGAGGGAAGCGGAGAACATCGTCCATGACAGGGAGTCCGAGATCGAGGAGCTCAAGTCCCAGCTGGGCAGGATGAGGGAGGACTGGATCGAGGAGGAGTGCCACCGTGTAGAGGCGCAGCTGGCCCTGAAGGAGGCACGCAAGGAGATCAAGCAGCTCCGGCAGGTTGTGGAGACCATGAAGAGCAGTCTGATGGAGAAGGACAAGGGCATCCAGAAGTACTTTGTCGACATCAACATCCAGAACCGCAAGCTGGAGTGCCTGCTGCACAGCATGGAGATGGCCCAGAGTGGCTCCACGCTGCAAGACGAGCCAACCATGGACTTCATCTGTGGTGACTCCCCTGTCAATGATAAGCAGGGGGAGGTGGGTGACCAGGCGGTGGAGGAGATGGCAGACTGTGGGCTGCTGGTCAACGACAACCTGGCACACATGCTCATGTCCACAGAAGTGGACTCTAGCGGTAAGCTACGCTGCCACCCAGAGGCTGGTCCTGGGGTGTCCACTCTACTCCACAgtctggaggaggagaagatcGCACCACTGCCTCCACCACCCTCCAACACGTTCTGTTGCAGCACACTCCCCTTCCCTGCTCCAGAGGAGAAGGCCGTTCAGACCGAGATGGTATCCTTCCCTCCTGACCTGCACACCCTCCTGCTGCAGCTGCTGAAGTTCCATGGTGGTGCAGTTGGAGATGCTCTCCTTCCAGCTTCTACCAGCCTCCTAGAAATCCCAGCACAGCAGGGCCCAGACTTGGCCCCTATCCCGTCCACCTTAAGCCTGCCTAGCTCCTGCCAGCCCATTCCAGTTCTGCCAGTGAGCCCTTATATGTTAAGTAATTCAGGGTTGTGTTGCTCAGACCCTGAGGTGGTCTCCATGCGCTTCATGGAGGAGCTGGATTTTGAGGTGAGCAGTGAGGAGCCCTGCAAGGCCCTCGGGGTGGCTGTGGTCAACAAAAGCTATTGGAGCAGCAGCTTCCTTGTTGATCTTGTTGCTGTGGCCGTACCAGTGTTGCCCACAGTGGCCTGGCTGTATTCCCGGCATGGCGTGGATGGGGCGGCGCCAGTCTACAACATCGCAGCATTGATCCGGGGCTGTTGCATCATGGGATTGCACTCTCTCCGTCATGTCACTCATCATGGGGCAGATGTGTAACGGTCTACGACCCCTGCGTGCACAGCCCGTCCCCTCCAATTAAAGCACTTCAACATTCGTTAATCAAAGAGTATTTGAATATTTAGTTTTTCTACACTTGTGAATATTAATGCTACAGTTATTACTTTAGGTTCCCACGTGGTTACTTTGCACTGTGTACAGTTGTTGCGGTGAGTTAAGTCTTTGTTTATGGTGAAAGGATtttgttaattgtatttatttttcctctgttctcttGTGTATAATCTGAGTAGGTGGTTATGCATCATTGATGTCCTGGGCTGGCACTAGTTACCCCTACTTAAAGCAGCCATGTTTTTTTTCTGAAAGTATTAGGATTTCTGAGGGTGGGGATGAAATAGAATGTTCGTTTGAACGAGTGTTTGTAGTGGTTTATGTTCCAAAATAATCTTAAACCTGCAGCCAAAGCTTTATTAATGAACGTTCACTCTTTATTTTTCTACCTGGGAGTAGAGCGTACATGTGTAACAAATTGATAGGTGTCAGACCAACGCTTCAAGACAACTCATACTTGTTTGTGCCTGAGCTACTGTGTGTAATACTCATAACATCAAATGTCCTAATATATTTACTATTAAAGCATGATAATCCCA

Function

symbol description
sybu Predicted to enable kinesin binding activity and syntaxin-1 binding activity. Acts upstream of or within determination of dorsal identity; regulation of Wnt signaling pathway involved in dorsal/ventral axis specification; and regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic microtubule and vesicle. Is expressed in blastomere; oocyte stage I; unfertilized egg; and yolk. Orthologous to human SYBU (syntabulin).

NR:

description
syntabulin-like

GO:

id name namespace
GO:0017075 syntaxin-1 binding molecular_function
GO:0019894 kinesin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562800.2 False 2678 mRNA 0.53 8 41694437 41710790
XM_036948527.1 True 2650 mRNA 0.53 7 41699259 41710790

Neighbor

gene id symbol gene type direction distance location
LOC110489834 eny2 coding upstream 152783 41539240 ~ 41541654 (+)
LOC110489825 LOC106605056 coding upstream 233529 41454259 ~ 41460908 (+)
LOC110489815 LOC106605058 coding upstream 339237 41294681 ~ 41355200 (+)
LOC110489783 LOC106605064 coding upstream 809297 40881174 ~ 40885140 (+)
LOC110489695 LOC106605067 coding upstream 846678 40781026 ~ 40847759 (+)
LOC110489869 LOC106605052 coding downstream 19895 41730685 ~ 41741910 (+)
LOC110489877 LOC106605051 coding downstream 39249 41750039 ~ 41826833 (+)
LOC110489902 LOC106605050 coding downstream 326710 42037500 ~ 42039843 (+)
LOC110489918 NA coding downstream 356214 42067004 ~ 42092073 (+)
LOC110489908 LOC106605043 coding downstream 389500 42100290 ~ 42141745 (+)
G143739 NA non-coding upstream 24130 41669792 ~ 41670307 (+)
G143237 NA non-coding upstream 296800 41397300 ~ 41397637 (+)
G143236 NA non-coding upstream 299330 41394853 ~ 41395107 (+)
G143235 NA non-coding upstream 301792 41392430 ~ 41392645 (+)
G143225 NA non-coding upstream 317750 41376316 ~ 41376687 (+)
G143778 NA non-coding downstream 31583 41742373 ~ 41742549 (+)
G143779 NA non-coding downstream 32729 41743519 ~ 41743788 (+)
G143840 NA non-coding downstream 81923 41792713 ~ 41838218 (+)
G143860 LOC107662719 non-coding downstream 133185 41843975 ~ 41844344 (+)
G143940 NA non-coding downstream 261135 41971925 ~ 41972187 (+)
G139179 NA other upstream 3642693 38051359 ~ 38051744 (+)
G139101 NA other upstream 3750425 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 3753723 37919735 ~ 37940714 (+)
G139004 NA other upstream 3870427 37777061 ~ 37824010 (+)
G143938 LOC106605049 other downstream 257584 41968374 ~ 41969317 (+)
G144661 NA other downstream 799540 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 2020082 43730872 ~ 43731218 (+)
G146091 NA other downstream 2057917 43768707 ~ 43769162 (+)
G146114 NA other downstream 2088614 43799404 ~ 43799853 (+)

Expression


Co-expression Network