LOC110489860 (LOC106605053)


Basic Information

Item Value
gene id LOC110489860
gene name LOC106605053
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41714269 ~ 41730507 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562812.2
TGGGGGCAGAAGACAAATGCACAGCGATGCTGAGGGTGCCTCTTGCCCCGGCTTTAGTTCCACATCATCTCCTCTGTTTCAAGATGGCAGCCATGAAGCTATGAAGAAGCGATAAATGTTTCTGGAATAAATTATGAAAACAGATACTAGGTAGCAGCGTTAGACACATACGCCTGTGGTATGACTGGTATCATTATTGCAAGTGTGTTGTTTCTAGAGTGAGATTTATAAGGAAAAATACGTTGCATACCGGTATGCTCATTTGCTAAGCTAGCCAAATAAATGAATTCTGGGGACGGCCACATCTGATTCGCCAGCTGTCAGCTAAACAAGCATATTGATCTGTGCGCTCAACTTCACCATGGCCATCTCTCAGTTTCGCCTTTTCAAGATTTGCACATGGCTTGCAACCTTCCTTTCATTCTTCAGAAGGTTAATGTGCAGATCTGGGAGGTTGCGTAAGCTAAGCGGCGATCAGATATCTCTTCCAATTACGGTTGATTTTTCATCGGTGCCCAAACAGCCAGAGATTGAAGAATGGAGCTCGTGGGATGAAGAAGGTCCCACAAGTATCAAGATCGAGGGCGGTAACGGCAACGTGCCACCTCAGCCTGGCGAGGAAGAGGAACCAGACTACTTCAAAGACATGGCTCCCACCATCAGGAAAACACAGAAAATTGTGCTGAAGAAGAGGGAGCCACTCAACTACTTGGTACCCGATGGCAGTGCGGGCTTCTCCAGCAGACTGGCAGCCACTCAGGACACCTCCTTCATCCAGCCATCTTCTGAGCTTGGAGACATGGATACCTGGCACGAGGATACCAACGCCTGGGAGGATGAGTCGTCAGATGCTGCCTGGGAGGCCGATTTAGTGCTCAGACAACAgaagatggcagagagagaaaagcgTTCCATGGAACAGCAGAGGAAGAAGATGGAGAAGGAGGTTCAGAGGATGATGAAGAAGGACCAGAAGATTGCTGTCAAGCTCTCGTAACATTTTTTAGAGCACTCGTCCCTTGAGCCAGAAGGCAAAAAAAGAAACACTGAGACAAACTTCATCATGCCATCCTCTAGTCATCTCCACACGAAGATCATCTCTACTCCACAAAGCGGTCATTTAAAATAAATCTCTGTCCACCAGCCATCATTTGAGGCATGGCTTGGCCAGTGTGATGTTTGTTCAGTGACTGTTGCATTCAGCTATCGGAAGGCACTTCATTCCTGggatgtgttcattagggcacgcaacGGAAAACGGAAATGAGTATTTCTTATCTGACAAGTCCAGGAAGTCACTCCCTGattcagtccattttcttctgtTTTGCGCTGAATGAACACTACCATACTCTGCGCAATGCCCTTTGGTAATGCCCTATGTCAGAGACTGGGTATCAAATGTCACTCTGGCTAAGTATGACACTGGGTTCAGGTAGATAGTTTTGAGTTGTCCATTTGTATTTCCCAGGAATATGTGTAAATATACTGGTACCTATAGTACAAGTGGAGTCTCAAAAGAGACTTATTTCTATGACATTTGTCTTATTTATAACATGAAGGACAAAGGTGTGTAATTAAATGTAAGTCTCACTGTGTATCAGTTACATACATCCCTTTGTTGGCTTAGTTATTGTGCTTTTTAATTACGTTTCTCGTCATCGTTGTTCGAAAACACATTCTCTCATTGACGTTGCTTGATATTCCTGATGTACTTTTGCTGTACAGCCTTCAATATGCTGAATTGCACATTTTTGAATTGAAGGCTTTAAAAGAAGAGTTTCAGACTGAGGGTGTGGACACTGTCAAGGGGATTTGGGAATTTAATTGAGCCTTACTCAAGAGTTGGCTGTGGATTCCTATGGTAATCCTATGGTTACTGATCGGCCAGGCTCAACATTTTTGACGTCTTGAATAATCAAAACATTTTCCTGTTTGTTCTTATCCCTGCTTTTTAATACACCAAAATAGAAGCGGCGACTCTAACAACTTTTGTCTTTTATTATTATGttgaatgtgtttttatttttttattttacacgtTCAATGTAGCATAACGCATACaaactctgtctctgtgttatctGAGAAAGTTTGGTTATCAGACATGGCCAACTCACATCCTTGATCAGTGATCATAGCAAATAAAAAGATGCAAAGCTCTGTGCTCCCCTCCTCATTTAATTTGCAGATGGTTAATAACAGAATCAGTCAAAATATTTCATAAGTTAAAGCCTTTTCCATTGCCTGGACCAATAACCTGTTACGTATCAATATGATTTTGGTATGGTCAATCGGTGTCGAATCAAGTGGATCTTTTTGTGAAggaagtgtgtgttgtgtgcgagTGCCCAGCAACTGGTGTATGAGACTGGAATGTCAAGCAGAAGGGTCTAGTTGCCATAGAAACATATTTGCAGAGATGGCGCTGTAGAACTGACATAAGGCATTTGCAATCAAACAGACCTGTTGGATTAGAATAACAATTGATAGTACCTTTTCCAAATTTGTGTTTTCCTTATACCATCAGTGGGGTATCCTGTATATAATATGGGGATTCTGGCAAAAGTAGTTTTTATATTGAATGTCTAAGTGAACGATACCTTTTAAACATTGGTGTTTTCATGGTTATTTTAGGTGGGGCTTTGTGGTAAATGAGGGATTCATTTATTTTTTGCAGAGAATATTGATATCGATGATATTGATAATAAAGAATATTGATAGTATTATATTGCCCATTGCATGGAACATTGGATCAGGAAGAAAGAGGTTGTTAGCCACAGACAATTATGAAAATACTGCTGACCTTTGTGCTTTTGCTTTCTTTGCAAATTCTTCTTCCAATTGTTATCAAAGTCAGCATGATGGGGATACATGaaaatgtttttctttgtcaATAAAGATCTCTTTTTTTGCACATT
>TU165059
GGCAGCCATGAAGCTATGAAGAAGCGATAAATGTTTCTGGAATAAATTATGAAAACAGATACTAGGTAGCAGCGTTAGACACATACGCCTGTGGTATGACTGGTATCATTATTGCAAGTGTGTTGTTTCTAGAGTGAGATTTATAAGGAAAAATACGTTGCATACCGGTATGCTCATTTGCTAAGCTAGCCAAATAAATGAATTCTGGGGACGGCCACATCTGATTCGCCAGCTGTCAGCTAAACAAGCATATTGATCTGTGCGCTCAACTTCACCATGGCCATCTCTCAGTTTCGCCTTTTCAAGATTTGCACATGGCTTGCAACCTTCCTTTCATTCTTCAGAAGGTTAATGTGCAGATCTGGGAGGTTGCGTAAGCTAAGCGGCGATCAGATATCTCTTCCAATTACGGTTGATTTTTCATCGGTGCCCAAACAGAGATTGAAGAATGGAGCTCGTGGGATGAAGAAGGTCCCACAAGTATCAAGATCGAGGGCGGTAACGGCAACGTGCCACCTCAGCCTGGCGAGGAAGAGGAACCAGACTACTTCAAAGACATGGCTCCCACCATCAGGAAAACACAGAAAATTGTGCTGAAGAAGAGGGAGCCACTCAACTACTTGGTACCCGATGGCAGTGCGGGCTTCTCCAGCAGACTGGCAGCCACTCAGGACACCTCCTTCATCCAGCCATCTTCTGAGCTTGGAGACATGGATACCTGGCACGAGGATACCAACGCCTGGGAGGATGAGTCGTCAGATGCTGCCTGGGAGGCCGATTTAGTGCTCAGACAACAgaagatggcagagagagaaaagcgTTCCATGGAACAGCAGAGGAAGAAGATGGAGAAGGAGGTTCAGAGGATGATGAAGAAGGACCAGAAGATTGCTGTCAAGCTCTCGTAACATTTTTTAGAGCACTCGTCCCTTGAGCCAGAAGGCAAAAAAAGAAACACTGAGACAAACTTCATCATGCCATCCTCTAGTCATCTCCACACGAAGATCATCTCTACTCCACAAAGCGGTCATTTAAAATAAATCTCTGTCCACCAGCCATCATTTGAGGCATGGCTTGGCCAGTGTGATGTTTGTTCAGTGACTGTTGCATTCAGCTATCGGAAGGCACTTCATTCCTGggatgtgttcattagggcacgcaacGGAAAACGGAAATGAGTATTTCTTATCTGACAAGTCCAGGAAGTCACTCCCTGattcagtccattttcttctgtTTTGCGCTGAATGAACACTACCATACTCTGCGCAATGCCCTTTGGTAATGCCCTATGTCAGAGACTGGGTATCAAATGTCACTCTGGCTAAGTATGACACTGGGTTCAGGTAGATAGTTTTGAGTTGTCCATTTGTATTTCCCAGGAATATGTGTAAATATACTGGTACCTATAGTACAAGTGGAGTCTCAAAAGAGACTTATTTCTATGACATTTGTCTTATTTATAACATGAAGGACAAAGGTGTGTAATTAAATGTAAGTCTCACTGTGTATCAGTTACATACATCCCTTTGTTGGCTTAGTTATTGTGCTTTTTAATTACGTTTCTCGTCATCGTTGTTCGAAAACACATTCTCTCATTGACGTTGCTTGATATTCCTGATGTACTTTTGCTGTACAGCCTTCAATATGCTGAATTGCACATTTTTGAATTGAAGGCTTTAAAAGAAGAGTTTCAGACTGAGGGTGTGGACACTGTCAAGGGGATTTGGGAATTTAATTGAGCCTTACTCAAGAGTTGGCTGTGGATTCCTATGGTAATCCTATGGTTACTGATCGGCCAGGCTCAACATTTTTGACGTCTTGAATAATCAAAACATTTTCCTGTTTGTTCTTATCCCTGCTTTTTAATACACCAAAATAGAAGCGGCGACTCTAACAACTTTTGTCTTTTATTATTATGttgaatgtgtttttatttttttattttacacgtTCAATGTAGCATAACGCATACaaactctgtctctgtgttatctGAGAAAGTTTGGTTATCAGACATGGCCAACTCACATCCTTGATCAGTGATCATAGCAAATAAAAAGATGCAAAGCTCTGTGCTCCCCTCCTCATTTAATTTGCAGATGGTTAATAACAGAATCAGTCAAAATATTTCATAAGTTAAAGCCTTTTCCATTGCCTGGACCAATAACCTGTTACGTATCAATATGATTTTGGTATGGTCAATCGGTGTCGAATCAAGTGGATCTTTTTGTGAAggaagtgtgtgttgtgtgcgagTGCCCAGCAACTGGTGTATGAGACTGGAATGTCAAGCAGAAGGGTCTAGTTGCCATAGAAACATATTTGCAGAGATGGCGCTGTAGAACTGACATAAGGCATTTGCAATCAAACAGACCTGTTGGATTAGAATAACAATTGATAGTACCTTTTCCAAATTTGTGTTTTCCTTATACCATCAGTGGGGTATCCTGTATATAATATGGGGATTCTGGCAAAAGTAGTTTTTATATTGAATGTCTAAGTGAACGATACCTTTTAAACATTGGTGTTTTCATGGTTATTTTAGGTGGGGC

Function

NR:

description
receptor-binding cancer antigen expressed on SiSo cells-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562812.2 False 2921 mRNA 0.41 7 41714269 41730507
TU165059 True 2555 TUCP 0.42 7 41714546 41730422

Neighbor

gene id symbol gene type direction distance location
LOC110489843 LOC106605054 coding downstream 26736 41679632 ~ 41687533 (-)
LOC110489824 LOC106605057 coding downstream 274453 41436627 ~ 41439816 (-)
LOC110489806 if36 coding downstream 428507 41239892 ~ 41285762 (-)
LOC110489798 LOC106583742 coding downstream 476750 41157008 ~ 41237519 (-)
LOC110489723 NA coding downstream 602289 40928216 ~ 41111980 (-)
LOC110489886 LOC106605049 coding upstream 233215 41963722 ~ 41969950 (-)
LOC110489894 LOC106605044 coding upstream 264430 41994937 ~ 42030841 (-)
LOC110501561 LOC106605047 coding upstream 354904 42085411 ~ 42100295 (-)
LOC110489954 LOC106605048 coding upstream 487140 42217647 ~ 42223758 (-)
LOC118940237 NA coding upstream 583584 42314091 ~ 42340473 (-)
G143793 LOC106583515 non-coding downstream 1487 41711902 ~ 41712782 (-)
G143786 NA non-coding downstream 20028 41694038 ~ 41694241 (-)
G143785 NA non-coding downstream 21499 41692552 ~ 41692770 (-)
G143735 NA non-coding downstream 46865 41667115 ~ 41667404 (-)
G143803 NA non-coding upstream 4744 41735251 ~ 41735635 (-)
G143804 NA non-coding upstream 5753 41736260 ~ 41736468 (-)
G143805 NA non-coding upstream 9939 41740446 ~ 41740777 (-)
G143806 NA non-coding upstream 10342 41740849 ~ 41741079 (-)
G144195 NA non-coding upstream 39123 41769630 ~ 41769971 (-)
G142918 NA other downstream 850548 40863214 ~ 40863721 (-)
LOC110489653 LOC106605072 other downstream 1472865 40224622 ~ 40298333 (-)
G141363 LOC106605077 other downstream 1948796 39763933 ~ 39765473 (-)
G140879 NA other downstream 2649851 39063862 ~ 39064418 (-)
G140479 NA other downstream 2886074 38827909 ~ 38828195 (-)
G145010 NA other upstream 976311 42706818 ~ 42707279 (-)
G145767 NA other upstream 1540210 43270717 ~ 43272516 (-)
LOC110490183 LOC106605015 other upstream 1642333 43372725 ~ 43392160 (-)
LOC110490298 LOC106605170 other upstream 2045556 43776063 ~ 43783884 (-)
LOC110490352 NA other upstream 2704283 44434790 ~ 44464449 (-)

Expression


Co-expression Network